| http://purl.uniprot.org/unirules/MF_01622#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:587576 up:source unirule:MF_01622 .
_:587577 up:source unirule:MF_01622 .
_:587578 up:source unirule:MF_01622 .
_:587579 up:source unirule:MF_01622 .
_:587580 up:source unirule:MF_01622 .
_:587581 up:source unirule:MF_01622 .
_:587582 up:source unirule:MF_01622 .
_:587583 up:source unirule:MF_01622 .
_:587584 up:source unirule:MF_01622 .
_:587585 up:source unirule:MF_01622 .
_:587586 up:source unirule:MF_01622 .
_:587587 up:source unirule:MF_01622 .
_:587588 up:source unirule:MF_01622 .
_:587589 up:source unirule:MF_01622 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ,
?annotation9 ,
?annotation11 ,
?annotation12 ;
up:classifiedWith GO:0002098 ,
GO:0016765 ,
keyword:711 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.9.1.3' ;
up:fullName 'tRNA 2-selenouridine synthase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'selU' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Involved in the post-transcriptional modification of the uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Catalyzes the conversion of 2-thiouridine (S2U-RNA) to 2-selenouridine (Se2U-RNA). Acts in a two-step process involving geranylation of 2-thiouridine (S2U) to S-geranyl-2-thiouridine (geS2U) and subsequent selenation of the latter derivative to 2-selenouridine (Se2U) in the tRNA chain.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity .
?annotation7 up:activity ?activity8 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity8 up:catalyticActivity .
?annotation9 up:activity ?activity10 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity10 up:catalyticActivity .
?annotation11 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation12 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the SelU family.' .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'S-selanylcysteine intermediate' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
_:587590 a rdf:Statement ;
up:attribution _:587576 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:587591 a rdf:Statement ;
up:attribution _:587577 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:587592 a rdf:Statement ;
up:attribution _:587578 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:587593 a rdf:Statement ;
up:attribution _:587579 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:587594 a rdf:Statement ;
up:attribution _:587580 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:587595 a rdf:Statement ;
up:attribution _:587581 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:587596 a rdf:Statement ;
up:attribution _:587582 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:587597 a rdf:Statement ;
up:attribution _:587583 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:587598 a rdf:Statement ;
up:attribution _:587584 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:587599 a rdf:Statement ;
up:attribution _:587585 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:711 .
_:587600 a rdf:Statement ;
up:attribution _:587586 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:587601 a rdf:Statement ;
up:attribution _:587587 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016765 .
_:587602 a rdf:Statement ;
up:attribution _:587588 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0002098 .
_:587603 a rdf:Statement ;
up:source unirule:MF_01622 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:587604 a rdf:Statement ;
up:attribution _:587589 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01622
#Rule MF_01622 Created by:? on:2005-11-21 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01622 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_01622a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01622a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01622a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01622a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01622a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01622a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01622a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_01622a12')) AS ?annotation12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch23 faldo:location ?templateMotifSequenceMatchRegionP3366724 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3366726 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33667MF_0162219 .
?templateMotifSequenceMatchRegionP3366724 faldo:begin ?templateMotifSequenceMatchBeginP3366725 .
?templateMotifSequenceMatchBeginP3366725 faldo:position ?templateMotifSequenceMatchBeginPositionP3366720 ;
faldo:reference isoform:P33667-1 .
?templateMotifSequenceProfileAlignmentOperationP3366726 edam:has_input signature:MF_01622 ;
rdf:type edam:operation_0300 .
?targetMotifMatch27 faldo:location ?targetMotifMatchRegionMatch28 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0162230 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33667MF_0162221 .
?targetMotifMatchRegionMatch28 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0162229 .
?targetMotifMatchRegionMatchBeginMF_0162229 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0162222 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0162230 edam:has_input signature:MF_01622 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33667MF_0162219, 1, (STRLEN(?templateMotifCigarP33667MF_0162219) - STRLEN(REPLACE(?templateMotifCigarP33667MF_0162219, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionP3366720) + 1)), '}'), '')))), '[a-z]', '')) AS ?step131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33667MF_0162221, 1, (STRLEN(?targetMotifMatchCigarP33667MF_0162221) - STRLEN(REPLACE(?targetMotifMatchCigarP33667MF_0162221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33667MF_0162221, 1, (STRLEN(?targetMotifMatchCigarP33667MF_0162221) - STRLEN(REPLACE(?targetMotifMatchCigarP33667MF_0162221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), '')))), '[^-]', ''))) AS ?step232) .
BIND(((?step232 + ?targetMotifMatchRegionMatchBeginPositionMF_0162222) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01622a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
}
"xsd:string |
