| http://purl.uniprot.org/unirules/MF_01651#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:602854 up:source unirule:MF_01651 .
_:602855 up:source unirule:MF_01651 .
_:602856 up:source unirule:MF_01651 .
_:602857 up:source unirule:MF_01651 .
_:602858 up:source unirule:MF_01651 .
_:602859 up:source unirule:MF_01651 .
_:602860 up:source unirule:MF_01651 .
_:602861 up:source unirule:MF_01651 .
_:602862 up:source unirule:MF_01651 .
_:602863 up:source unirule:MF_01651 .
_:602864 up:source unirule:MF_01651 .
_:602865 up:source unirule:MF_01651 .
_:602866 up:source unirule:MF_01651 .
_:602867 up:source unirule:MF_01651 .
_:602868 up:source unirule:MF_01651 .
_:602869 up:source unirule:MF_01651 .
_:602870 up:source unirule:MF_01651 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0008695 ,
GO:0019380 ,
keyword:274 ,
keyword:285 ,
keyword:520 ,
keyword:560 ,
keyword:58 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.18.1.3' ;
up:fullName '3-phenylpropionate/cinnamic acid dioxygenase ferredoxin--NAD(+) reductase component' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'hcaD' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Part of the multicomponent 3-phenylpropionate dioxygenase, that converts 3-phenylpropionic acid (PP) and cinnamic acid (CI) into 3-phenylpropionate-dihydrodiol (PP-dihydrodiol) and cinnamic acid-dihydrodiol (CI-dihydrodiol), respectively.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:57692 ;
rdf:type up:Cofactor_Annotation .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Aromatic compound metabolism; 3-phenylpropanoate degradation.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'This dioxygenase system consists of four proteins: the two subunits of the hydroxylase component (HcaE and HcaF), a ferredoxin (HcaC) and a ferredoxin reductase (HcaD).' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the bacterial ring-hydroxylating dioxygenase ferredoxin reductase family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:57692 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:57540 .
_:602871 a rdf:Statement ;
up:attribution _:602854 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:602872 a rdf:Statement ;
up:attribution _:602855 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:602873 a rdf:Statement ;
up:attribution _:602856 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:602874 a rdf:Statement ;
up:attribution _:602857 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:602875 a rdf:Statement ;
up:attribution _:602858 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:602876 a rdf:Statement ;
up:attribution _:602859 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:602877 a rdf:Statement ;
up:attribution _:602860 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:602878 a rdf:Statement ;
up:attribution _:602861 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:602879 a rdf:Statement ;
up:attribution _:602862 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:58 .
_:602880 a rdf:Statement ;
up:attribution _:602863 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:274 .
_:602881 a rdf:Statement ;
up:attribution _:602864 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:602882 a rdf:Statement ;
up:attribution _:602865 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:602883 a rdf:Statement ;
up:attribution _:602866 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:602884 a rdf:Statement ;
up:attribution _:602867 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008695 .
_:602885 a rdf:Statement ;
up:attribution _:602868 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019380 .
_:602886 a rdf:Statement ;
up:source unirule:MF_01651 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:602887 a rdf:Statement ;
up:attribution _:602869 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:602888 a rdf:Statement ;
up:source unirule:MF_01651 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:602889 a rdf:Statement ;
up:attribution _:602870 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01651
#Rule MF_01651 Created by:? on:2008-04-17 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01651 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01651a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01651a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01651a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01651a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01651a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01651a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01651a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch27 faldo:location ?templateMotifSequenceMatchRegionP7765028 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7765030 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77650MF_0165123 .
?templateMotifSequenceMatchRegionP7765028 faldo:begin ?templateMotifSequenceMatchBeginP7765029 .
?templateMotifSequenceMatchBeginP7765029 faldo:position ?templateMotifSequenceMatchBeginPositionP7765024 ;
faldo:reference isoform:P77650-1 .
?templateMotifSequenceProfileAlignmentOperationP7765030 edam:has_input signature:MF_01651 ;
rdf:type edam:operation_0300 .
?targetMotifMatch31 faldo:location ?targetMotifMatchRegionMatch32 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0165134 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77650MF_0165125 .
?targetMotifMatchRegionMatch32 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0165133 .
?targetMotifMatchRegionMatchBeginMF_0165133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0165126 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0165134 edam:has_input signature:MF_01651 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77650MF_0165123, 1, (STRLEN(?templateMotifCigarP77650MF_0165123) - STRLEN(REPLACE(?templateMotifCigarP77650MF_0165123, CONCAT('^(?:-*[^-]){', STR(((5 - ?templateMotifSequenceMatchBeginPositionP7765024) + 1)), '}'), '')))), '[a-z]', '')) AS ?step135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77650MF_0165125, 1, (STRLEN(?targetMotifMatchCigarP77650MF_0165125) - STRLEN(REPLACE(?targetMotifMatchCigarP77650MF_0165125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77650MF_0165125, 1, (STRLEN(?targetMotifMatchCigarP77650MF_0165125) - STRLEN(REPLACE(?targetMotifMatchCigarP77650MF_0165125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step135), '}'), '')))), '[^-]', ''))) AS ?step236) .
BIND(((?step236 + ?targetMotifMatchRegionMatchBeginPositionMF_0165126) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77650MF_0165123, 1, (STRLEN(?templateMotifCigarP77650MF_0165123) - STRLEN(REPLACE(?templateMotifCigarP77650MF_0165123, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionP7765024) + 1)), '}'), '')))), '[a-z]', '')) AS ?step137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77650MF_0165125, 1, (STRLEN(?targetMotifMatchCigarP77650MF_0165125) - STRLEN(REPLACE(?targetMotifMatchCigarP77650MF_0165125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77650MF_0165125, 1, (STRLEN(?targetMotifMatchCigarP77650MF_0165125) - STRLEN(REPLACE(?targetMotifMatchCigarP77650MF_0165125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), '')))), '[^-]', ''))) AS ?step238) .
BIND(((?step238 + ?targetMotifMatchRegionMatchBeginPositionMF_0165126) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((BOUND(?thisPositionOn14) && BOUND(?thisPositionOn15))) .
BIND(URI(CONCAT(STR(?this), '#MF_01651a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionP7765045 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7765047 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77650MF_0165140 .
?templateMotifSequenceMatchRegionP7765045 faldo:begin ?templateMotifSequenceMatchBeginP7765046 .
?templateMotifSequenceMatchBeginP7765046 faldo:position ?templateMotifSequenceMatchBeginPositionP7765041 ;
faldo:reference isoform:P77650-1 .
?templateMotifSequenceProfileAlignmentOperationP7765047 edam:has_input signature:MF_01651 ;
rdf:type edam:operation_0300 .
?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0165151 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77650MF_0165142 .
?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0165150 .
?targetMotifMatchRegionMatchBeginMF_0165150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0165143 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0165151 edam:has_input signature:MF_01651 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77650MF_0165140, 1, (STRLEN(?templateMotifCigarP77650MF_0165140) - STRLEN(REPLACE(?templateMotifCigarP77650MF_0165140, CONCAT('^(?:-*[^-]){', STR(((146 - ?templateMotifSequenceMatchBeginPositionP7765041) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77650MF_0165142, 1, (STRLEN(?targetMotifMatchCigarP77650MF_0165142) - STRLEN(REPLACE(?targetMotifMatchCigarP77650MF_0165142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77650MF_0165142, 1, (STRLEN(?targetMotifMatchCigarP77650MF_0165142) - STRLEN(REPLACE(?targetMotifMatchCigarP77650MF_0165142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0165143) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77650MF_0165140, 1, (STRLEN(?templateMotifCigarP77650MF_0165140) - STRLEN(REPLACE(?templateMotifCigarP77650MF_0165140, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionP7765041) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77650MF_0165142, 1, (STRLEN(?targetMotifMatchCigarP77650MF_0165142) - STRLEN(REPLACE(?targetMotifMatchCigarP77650MF_0165142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77650MF_0165142, 1, (STRLEN(?targetMotifMatchCigarP77650MF_0165142) - STRLEN(REPLACE(?targetMotifMatchCigarP77650MF_0165142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0165143) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((BOUND(?thisPositionOn21) && BOUND(?thisPositionOn22))) .
BIND(URI(CONCAT(STR(?this), '#MF_01651a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
}
"xsd:string |
