| http://purl.uniprot.org/unirules/MF_01677#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01677#construct-template-25 |
| http://purl.uniprot.org/unirules/MF_01677#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01677#construct-template-27 |
| http://purl.uniprot.org/unirules/MF_01677#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01677#construct-template-6 |
| http://purl.uniprot.org/unirules/MF_01677#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01677#construct-template-8 |
| http://purl.uniprot.org/unirules/MF_01677#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01677#construct-template-28 |
| http://purl.uniprot.org/unirules/MF_01677#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01677#construct-template-15 |
| http://purl.uniprot.org/unirules/MF_01677#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01677#construct-template-1 |
| http://purl.uniprot.org/unirules/MF_01677#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01677#construct-template-38 |
| http://purl.uniprot.org/unirules/MF_01677#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01677#construct-template-4 |
| http://purl.uniprot.org/unirules/MF_01677#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01677#construct-template-69 |
| http://purl.uniprot.org/unirules/MF_01677#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01677#construct-template-84 |
| http://purl.uniprot.org/unirules/MF_01677#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01677#construct-template-87 |
| http://purl.uniprot.org/unirules/MF_01677#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01677#construct-template-86 |
| http://purl.uniprot.org/unirules/MF_01677#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01677#construct-template-85 |
| http://purl.uniprot.org/unirules/MF_01677#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01677#construct-template-82 |
| http://purl.uniprot.org/unirules/MF_01677#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01677#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01677#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01677#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01677#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01677#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:612066 up:source unirule:MF_01677 .
_:612067 up:source unirule:MF_01677 .
_:612068 up:source unirule:MF_01677 .
_:612069 up:source unirule:MF_01677 .
_:612070 up:source unirule:MF_01677 .
_:612071 up:source unirule:MF_01677 .
_:612072 up:source unirule:MF_01677 .
_:612073 up:source unirule:MF_01677 .
_:612074 up:source unirule:MF_01677 .
_:612075 up:source unirule:MF_01677 .
_:612076 up:source unirule:MF_01677 .
_:612077 up:source unirule:MF_01677 .
_:612078 up:source unirule:MF_01677 .
_:612079 up:source unirule:MF_01677 .
_:612080 up:source unirule:MF_01677 .
_:612081 up:source unirule:MF_01677 .
_:612082 up:source unirule:MF_01677 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0008270 ,
GO:0019509 ,
GO:0046570 ,
keyword:28 ,
keyword:456 ,
keyword:479 ,
keyword:486 ,
keyword:862 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.2.1.109' ;
up:fullName 'Methylthioribulose-1-phosphate dehydratase' ;
up:shortName 'MTRu-1-P dehydratase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'mtnB' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P).' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:29105 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 zinc ion per subunit.' .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; L-methionine from S-methyl-5-thio-alpha-D-ribose 1-phosphate: step 2/6.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the aldolase class II family. MtnB subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:29105 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:29105 .
_:612083 a rdf:Statement ;
up:attribution _:612066 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:612084 a rdf:Statement ;
up:attribution _:612067 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:612085 a rdf:Statement ;
up:attribution _:612068 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:612086 a rdf:Statement ;
up:attribution _:612069 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:612087 a rdf:Statement ;
up:attribution _:612070 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:612088 a rdf:Statement ;
up:attribution _:612071 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:612089 a rdf:Statement ;
up:attribution _:612072 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:612090 a rdf:Statement ;
up:attribution _:612073 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:612091 a rdf:Statement ;
up:attribution _:612074 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:612092 a rdf:Statement ;
up:attribution _:612075 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:612093 a rdf:Statement ;
up:attribution _:612076 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:486 .
_:612094 a rdf:Statement ;
up:attribution _:612077 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:612095 a rdf:Statement ;
up:attribution _:612078 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:612096 a rdf:Statement ;
up:attribution _:612079 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046570 .
_:612097 a rdf:Statement ;
up:attribution _:612080 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019509 .
_:612098 a rdf:Statement ;
up:source unirule:MF_01677 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:612099 a rdf:Statement ;
up:attribution _:612081 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:612100 a rdf:Statement ;
up:source unirule:MF_01677 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:612101 a rdf:Statement ;
up:attribution _:612082 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01677
#Rule MF_01677 Created by:? on:2008-10-15 Modified by:Edouard de Castro on:2024-09-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01677 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01677a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01677a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01677a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01677a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01677a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01677a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch27 faldo:location ?templateMotifSequenceMatchRegionO3166828 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO3166830 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO31668MF_0167723 .
?templateMotifSequenceMatchRegionO3166828 faldo:begin ?templateMotifSequenceMatchBeginO3166829 .
?templateMotifSequenceMatchBeginO3166829 faldo:position ?templateMotifSequenceMatchBeginPositionO3166824 ;
faldo:reference isoform:O31668-1 .
?templateMotifSequenceProfileAlignmentOperationO3166830 edam:has_input signature:MF_01677 ;
rdf:type edam:operation_0300 .
?targetMotifMatch31 faldo:location ?targetMotifMatchRegionMatch32 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0167734 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO31668MF_0167725 .
?targetMotifMatchRegionMatch32 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0167733 .
?targetMotifMatchRegionMatchBeginMF_0167733 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0167726 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0167734 edam:has_input signature:MF_01677 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO31668MF_0167723, 1, (STRLEN(?templateMotifCigarO31668MF_0167723) - STRLEN(REPLACE(?templateMotifCigarO31668MF_0167723, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionO3166824) + 1)), '}'), '')))), '[a-z]', '')) AS ?step135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO31668MF_0167725, 1, (STRLEN(?targetMotifMatchCigarO31668MF_0167725) - STRLEN(REPLACE(?targetMotifMatchCigarO31668MF_0167725, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO31668MF_0167725, 1, (STRLEN(?targetMotifMatchCigarO31668MF_0167725) - STRLEN(REPLACE(?targetMotifMatchCigarO31668MF_0167725, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step135), '}'), '')))), '[^-]', ''))) AS ?step236) .
BIND(((?step236 + ?targetMotifMatchRegionMatchBeginPositionMF_0167726) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01677a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch42 faldo:location ?templateMotifSequenceMatchRegionO3166843 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO3166845 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO31668MF_0167738 .
?templateMotifSequenceMatchRegionO3166843 faldo:begin ?templateMotifSequenceMatchBeginO3166844 .
?templateMotifSequenceMatchBeginO3166844 faldo:position ?templateMotifSequenceMatchBeginPositionO3166839 ;
faldo:reference isoform:O31668-1 .
?templateMotifSequenceProfileAlignmentOperationO3166845 edam:has_input signature:MF_01677 ;
rdf:type edam:operation_0300 .
?targetMotifMatch46 faldo:location ?targetMotifMatchRegionMatch47 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0167749 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO31668MF_0167740 .
?targetMotifMatchRegionMatch47 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0167748 .
?targetMotifMatchRegionMatchBeginMF_0167748 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0167741 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0167749 edam:has_input signature:MF_01677 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO31668MF_0167738, 1, (STRLEN(?templateMotifCigarO31668MF_0167738) - STRLEN(REPLACE(?templateMotifCigarO31668MF_0167738, CONCAT('^(?:-*[^-]){', STR(((100 - ?templateMotifSequenceMatchBeginPositionO3166839) + 1)), '}'), '')))), '[a-z]', '')) AS ?step150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO31668MF_0167740, 1, (STRLEN(?targetMotifMatchCigarO31668MF_0167740) - STRLEN(REPLACE(?targetMotifMatchCigarO31668MF_0167740, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO31668MF_0167740, 1, (STRLEN(?targetMotifMatchCigarO31668MF_0167740) - STRLEN(REPLACE(?targetMotifMatchCigarO31668MF_0167740, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), '')))), '[^-]', ''))) AS ?step251) .
BIND(((?step251 + ?targetMotifMatchRegionMatchBeginPositionMF_0167741) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01677a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:186817 .
BIND(?this AS ?case8) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_01677 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01677#construct |
