| http://purl.uniprot.org/unirules/MF_01692#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:618677 up:source unirule:MF_01692 .
_:618678 up:source unirule:MF_01692 .
_:618679 up:source unirule:MF_01692 .
_:618680 up:source unirule:MF_01692 .
_:618681 up:source unirule:MF_01692 .
_:618682 up:source unirule:MF_01692 .
_:618683 up:source unirule:MF_01692 .
_:618684 up:source unirule:MF_01692 .
_:618685 up:source unirule:MF_01692 .
_:618686 up:source unirule:MF_01692 .
_:618687 up:source unirule:MF_01692 .
_:618688 up:source unirule:MF_01692 .
_:618689 up:source unirule:MF_01692 .
_:618690 up:source unirule:MF_01692 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation5 ;
up:classifiedWith GO:0009089 ,
GO:0019877 ,
GO:0050118 ,
keyword:220 ,
keyword:28 ,
keyword:378 ,
keyword:457 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.1.47' ;
up:fullName 'N-acetyldiaminopimelate deacetylase' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate.' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; LL-2,6-diaminopimelate from (S)-tetrahydrodipicolinate (acetylase route): step 3/3.' .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the peptidase M20A family. N-acetyldiaminopimelate deacetylase subfamily.' .
?pfs6 up:annotation ?annotation7 .
?annotation7 faldo:begin ?pfsb8 ;
faldo:end ?pfse9 ;
rdf:type up:Active_Site_Annotation .
?pfsb8 faldo:position ?thisPositionOn10 ;
rdf:type faldo:ExactPosition .
?pfse9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
_:618691 a rdf:Statement ;
up:attribution _:618677 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:618692 a rdf:Statement ;
up:attribution _:618678 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:618693 a rdf:Statement ;
up:attribution _:618679 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:618694 a rdf:Statement ;
up:attribution _:618680 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:618695 a rdf:Statement ;
up:attribution _:618681 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:618696 a rdf:Statement ;
up:attribution _:618682 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:618697 a rdf:Statement ;
up:attribution _:618683 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:220 .
_:618698 a rdf:Statement ;
up:attribution _:618684 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:618699 a rdf:Statement ;
up:attribution _:618685 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:457 .
_:618700 a rdf:Statement ;
up:attribution _:618686 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050118 .
_:618701 a rdf:Statement ;
up:attribution _:618687 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009089 .
_:618702 a rdf:Statement ;
up:attribution _:618688 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019877 .
_:618703 a rdf:Statement ;
up:source unirule:MF_01692 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:618704 a rdf:Statement ;
up:attribution _:618689 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:618705 a rdf:Statement ;
up:source unirule:MF_01692 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:618706 a rdf:Statement ;
up:attribution _:618690 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01692
#Rule MF_01692 Created by:? on:2009-04-30 Modified by:Elisabeth Coudert on:2025-01-09
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01692 .
?thisOrganism rdfs:subClassOf+ taxon:1239 .
BIND(URI(CONCAT(STR(?this), '#MF_01692a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01692a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01692a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01692a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01692a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch22 faldo:location ?templateMotifSequenceMatchRegionO3491623 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO3491625 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO34916MF_0169218 .
?templateMotifSequenceMatchRegionO3491623 faldo:begin ?templateMotifSequenceMatchBeginO3491624 .
?templateMotifSequenceMatchBeginO3491624 faldo:position ?templateMotifSequenceMatchBeginPositionO3491619 ;
faldo:reference isoform:O34916-1 .
?templateMotifSequenceProfileAlignmentOperationO3491625 edam:has_input signature:MF_01692 ;
rdf:type edam:operation_0300 .
?targetMotifMatch26 faldo:location ?targetMotifMatchRegionMatch27 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0169229 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO34916MF_0169220 .
?targetMotifMatchRegionMatch27 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0169228 .
?targetMotifMatchRegionMatchBeginMF_0169228 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0169221 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0169229 edam:has_input signature:MF_01692 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO34916MF_0169218, 1, (STRLEN(?templateMotifCigarO34916MF_0169218) - STRLEN(REPLACE(?templateMotifCigarO34916MF_0169218, CONCAT('^(?:-*[^-]){', STR(((69 - ?templateMotifSequenceMatchBeginPositionO3491619) + 1)), '}'), '')))), '[a-z]', '')) AS ?step130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO34916MF_0169220, 1, (STRLEN(?targetMotifMatchCigarO34916MF_0169220) - STRLEN(REPLACE(?targetMotifMatchCigarO34916MF_0169220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO34916MF_0169220, 1, (STRLEN(?targetMotifMatchCigarO34916MF_0169220) - STRLEN(REPLACE(?targetMotifMatchCigarO34916MF_0169220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), '')))), '[^-]', ''))) AS ?step231) .
BIND(((?step231 + ?targetMotifMatchRegionMatchBeginPositionMF_0169221) - 1) AS ?thisPositionOn10) .
BIND(?thisPositionOn10 AS ?thisPositionOn11) .
BIND(?this AS ?pfs1t32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb8) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse9) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn10, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01692a7')) AS ?annotation7) .
BIND(?this AS ?pfs6) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch37 faldo:location ?templateMotifSequenceMatchRegionO3491638 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO3491640 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO34916MF_0169233 .
?templateMotifSequenceMatchRegionO3491638 faldo:begin ?templateMotifSequenceMatchBeginO3491639 .
?templateMotifSequenceMatchBeginO3491639 faldo:position ?templateMotifSequenceMatchBeginPositionO3491634 ;
faldo:reference isoform:O34916-1 .
?templateMotifSequenceProfileAlignmentOperationO3491640 edam:has_input signature:MF_01692 ;
rdf:type edam:operation_0300 .
?targetMotifMatch41 faldo:location ?targetMotifMatchRegionMatch42 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0169244 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO34916MF_0169235 .
?targetMotifMatchRegionMatch42 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0169243 .
?targetMotifMatchRegionMatchBeginMF_0169243 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0169236 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0169244 edam:has_input signature:MF_01692 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO34916MF_0169233, 1, (STRLEN(?templateMotifCigarO34916MF_0169233) - STRLEN(REPLACE(?templateMotifCigarO34916MF_0169233, CONCAT('^(?:-*[^-]){', STR(((128 - ?templateMotifSequenceMatchBeginPositionO3491634) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO34916MF_0169235, 1, (STRLEN(?targetMotifMatchCigarO34916MF_0169235) - STRLEN(REPLACE(?targetMotifMatchCigarO34916MF_0169235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO34916MF_0169235, 1, (STRLEN(?targetMotifMatchCigarO34916MF_0169235) - STRLEN(REPLACE(?targetMotifMatchCigarO34916MF_0169235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) .
BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0169236) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01692a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
}
"xsd:string |
