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http://purl.uniprot.org/unirules/MF_01821#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_01821#construct-template-49
http://purl.uniprot.org/unirules/MF_01821#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_01821#construct-template-47
http://purl.uniprot.org/unirules/MF_01821#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_01821#construct-template-48
http://purl.uniprot.org/unirules/MF_01821#constructhttp://www.w3.org/ns/shacl#prefixeshttp://purl.uniprot.org/unirules/
http://purl.uniprot.org/unirules/MF_01821#constructhttp://spinrdf.org/sp#wherehttp://purl.uniprot.org/unirules/MF_01821#construct-where-list-0
http://purl.uniprot.org/unirules/MF_01821#constructhttp://spinrdf.org/sp#templateshttp://purl.uniprot.org/unirules/MF_01821#construct-template-list-0
http://purl.uniprot.org/unirules/MF_01821#constructhttp://www.w3.org/ns/shacl#construct"CONSTRUCT { _:638687 up:source unirule:MF_01821 . _:638688 up:source unirule:MF_01821 . _:638689 up:source unirule:MF_01821 . _:638690 up:source unirule:MF_01821 . _:638691 up:source unirule:MF_01821 . _:638692 up:source unirule:MF_01821 . _:638693 up:source unirule:MF_01821 . _:638694 up:source unirule:MF_01821 . _:638695 up:source unirule:MF_01821 . _:638696 up:source unirule:MF_01821 . _:638697 up:source unirule:MF_01821 . _:638698 up:source unirule:MF_01821 . _:638699 up:source unirule:MF_01821 . _:638700 up:source unirule:MF_01821 . _:638701 up:source unirule:MF_01821 . _:638702 up:source unirule:MF_01821 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation4 ; up:classifiedWith GO:0005524 , GO:0006355 , keyword:10 , keyword:238 , keyword:378 , keyword:547 , keyword:67 , keyword:804 , keyword:805 ; up:recommendedName ?name0 . ?name0 up:ecName '3.6.4.-' ; up:fullName 'RNA polymerase-associated protein RapA' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'rapA' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair.' . ?annotation3 a up:Subunit_Annotation ; rdfs:comment 'Interacts with the RNAP. Has a higher affinity for the core RNAP than for the holoenzyme. Its ATPase activity is stimulated by binding to RNAP.' . ?annotation4 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the SNF2/RAD54 helicase family. RapA subfamily.' . ?pfs5 up:annotation ?annotation6 . ?annotation6 faldo:begin ?pfsb7 ; faldo:end ?pfse8 ; up:ligand ?ligand9 ; rdf:type up:Binding_Site_Annotation . ?pfsb7 faldo:position ?thisPositionOn10 ; rdf:type faldo:ExactPosition . ?pfse8 faldo:position ?thisPositionOn11 ; rdf:type faldo:ExactPosition . ?ligand9 rdfs:subClassOf chebi:30616 . ?pfs12 up:annotation ?annotation13 . ?annotation13 faldo:begin ?pfsb14 ; faldo:end ?pfse15 ; rdf:type up:Motif_Annotation ; rdfs:comment 'DEAH box' . ?pfsb14 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfse15 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . _:638703 a rdf:Statement ; up:attribution _:638687 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:638704 a rdf:Statement ; up:attribution _:638688 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:638705 a rdf:Statement ; up:attribution _:638689 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:638706 a rdf:Statement ; up:attribution _:638690 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:638707 a rdf:Statement ; up:attribution _:638691 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:638708 a rdf:Statement ; up:attribution _:638692 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:804 . _:638709 a rdf:Statement ; up:attribution _:638693 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:805 . _:638710 a rdf:Statement ; up:attribution _:638694 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:638711 a rdf:Statement ; up:attribution _:638695 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:10 . _:638712 a rdf:Statement ; up:attribution _:638696 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:638713 a rdf:Statement ; up:attribution _:638697 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:638714 a rdf:Statement ; up:attribution _:638698 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:238 . _:638715 a rdf:Statement ; up:attribution _:638699 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:638716 a rdf:Statement ; up:attribution _:638700 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006355 . _:638717 a rdf:Statement ; up:source unirule:MF_01821 ; rdf:subject ?pfs5 ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:638718 a rdf:Statement ; up:attribution _:638701 ; rdf:subject ?pfs5 ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:638719 a rdf:Statement ; up:source unirule:MF_01821 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:638720 a rdf:Statement ; up:attribution _:638702 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01821 #Rule MF_01821 Created by:? on:2005-02-28 Modified by:Andrea Auchincloss on:2025-05-20 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01821 . ?thisOrganism rdfs:subClassOf+ taxon:1236 . BIND(URI(CONCAT(STR(?this), '#MF_01821a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01821a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_01821a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01821a4')) AS ?annotation4) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch22 faldo:location ?templateMotifSequenceMatchRegionP6024023 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6024025 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP60240MF_0182118 . ?templateMotifSequenceMatchRegionP6024023 faldo:begin ?templateMotifSequenceMatchBeginP6024024 . ?templateMotifSequenceMatchBeginP6024024 faldo:position ?templateMotifSequenceMatchBeginPositionP6024019 ; faldo:reference isoform:P60240-1 . ?templateMotifSequenceProfileAlignmentOperationP6024025 edam:has_input signature:MF_01821 ; rdf:type edam:operation_0300 . ?targetMotifMatch26 faldo:location ?targetMotifMatchRegionMatch27 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0182129 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP60240MF_0182120 . ?targetMotifMatchRegionMatch27 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0182128 . ?targetMotifMatchRegionMatchBeginMF_0182128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0182121 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0182129 edam:has_input signature:MF_01821 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60240MF_0182118, 1, (STRLEN(?templateMotifCigarP60240MF_0182118) - STRLEN(REPLACE(?templateMotifCigarP60240MF_0182118, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionP6024019) + 1)), '}'), '')))), '[a-z]', '')) AS ?step130) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60240MF_0182120, 1, (STRLEN(?targetMotifMatchCigarP60240MF_0182120) - STRLEN(REPLACE(?targetMotifMatchCigarP60240MF_0182120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60240MF_0182120, 1, (STRLEN(?targetMotifMatchCigarP60240MF_0182120) - STRLEN(REPLACE(?targetMotifMatchCigarP60240MF_0182120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), '')))), '[^-]', ''))) AS ?step231) . BIND(((?step231 + ?targetMotifMatchRegionMatchBeginPositionMF_0182121) - 1) AS ?thisPositionOn10) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60240MF_0182118, 1, (STRLEN(?templateMotifCigarP60240MF_0182118) - STRLEN(REPLACE(?templateMotifCigarP60240MF_0182118, CONCAT('^(?:-*[^-]){', STR(((184 - ?templateMotifSequenceMatchBeginPositionP6024019) + 1)), '}'), '')))), '[a-z]', '')) AS ?step132) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60240MF_0182120, 1, (STRLEN(?targetMotifMatchCigarP60240MF_0182120) - STRLEN(REPLACE(?targetMotifMatchCigarP60240MF_0182120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60240MF_0182120, 1, (STRLEN(?targetMotifMatchCigarP60240MF_0182120) - STRLEN(REPLACE(?targetMotifMatchCigarP60240MF_0182120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), '')))), '[^-]', ''))) AS ?step233) . BIND(((?step233 + ?targetMotifMatchRegionMatchBeginPositionMF_0182121) - 1) AS ?thisPositionOn11) . BIND(?this AS ?pfs1t34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb7) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse8) . FILTER (REGEX('D[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]G[ARNDCQEGHILKMFPSTWYVBZJUOX]GKT', SUBSTR(?thisSequenceValue, ?thisPositionOn10, (?thisPositionOn11 - ?thisPositionOn10)))) . BIND(URI(CONCAT(STR(?this), '#MF_01821a6')) AS ?annotation6) . BIND(?this AS ?pfs5) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch39 faldo:location ?templateMotifSequenceMatchRegionP6024040 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6024042 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP60240MF_0182135 . ?templateMotifSequenceMatchRegionP6024040 faldo:begin ?templateMotifSequenceMatchBeginP6024041 . ?templateMotifSequenceMatchBeginP6024041 faldo:position ?templateMotifSequenceMatchBeginPositionP6024036 ; faldo:reference isoform:P60240-1 . ?templateMotifSequenceProfileAlignmentOperationP6024042 edam:has_input signature:MF_01821 ; rdf:type edam:operation_0300 . ?targetMotifMatch43 faldo:location ?targetMotifMatchRegionMatch44 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0182146 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP60240MF_0182137 . ?targetMotifMatchRegionMatch44 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0182145 . ?targetMotifMatchRegionMatchBeginMF_0182145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0182138 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0182146 edam:has_input signature:MF_01821 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60240MF_0182135, 1, (STRLEN(?templateMotifCigarP60240MF_0182135) - STRLEN(REPLACE(?templateMotifCigarP60240MF_0182135, CONCAT('^(?:-*[^-]){', STR(((280 - ?templateMotifSequenceMatchBeginPositionP6024036) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60240MF_0182137, 1, (STRLEN(?targetMotifMatchCigarP60240MF_0182137) - STRLEN(REPLACE(?targetMotifMatchCigarP60240MF_0182137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60240MF_0182137, 1, (STRLEN(?targetMotifMatchCigarP60240MF_0182137) - STRLEN(REPLACE(?targetMotifMatchCigarP60240MF_0182137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) . BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0182138) - 1) AS ?thisPositionOn16) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60240MF_0182135, 1, (STRLEN(?templateMotifCigarP60240MF_0182135) - STRLEN(REPLACE(?templateMotifCigarP60240MF_0182135, CONCAT('^(?:-*[^-]){', STR(((283 - ?templateMotifSequenceMatchBeginPositionP6024036) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60240MF_0182137, 1, (STRLEN(?targetMotifMatchCigarP60240MF_0182137) - STRLEN(REPLACE(?targetMotifMatchCigarP60240MF_0182137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60240MF_0182137, 1, (STRLEN(?targetMotifMatchCigarP60240MF_0182137) - STRLEN(REPLACE(?targetMotifMatchCigarP60240MF_0182137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) . BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0182138) - 1) AS ?thisPositionOn17) . BIND(?this AS ?pfs1t51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) . FILTER (REGEX('DE[ALIV]H', SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)))) . BIND(URI(CONCAT(STR(?this), '#MF_01821a13')) AS ?annotation13) . BIND(?this AS ?pfs12) . } } "xsd:string
http://purl.uniprot.org/unirules/MF_01821http://www.w3.org/ns/shacl#rulehttp://purl.uniprot.org/unirules/MF_01821#construct
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