| http://purl.uniprot.org/unirules/MF_01833#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:640594 up:source unirule:MF_01833 .
_:640595 up:source unirule:MF_01833 .
_:640596 up:source unirule:MF_01833 .
_:640597 up:source unirule:MF_01833 .
_:640598 up:source unirule:MF_01833 .
_:640599 up:source unirule:MF_01833 .
_:640600 up:source unirule:MF_01833 .
_:640601 up:source unirule:MF_01833 .
_:640602 up:source unirule:MF_01833 .
_:640603 up:source unirule:MF_01833 .
_:640604 up:source unirule:MF_01833 .
_:640605 up:source unirule:MF_01833 .
_:640606 up:source unirule:MF_01833 .
_:640607 up:source unirule:MF_01833 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0000213 ,
GO:0006388 ,
keyword:456 ,
keyword:819 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.6.1.16' ;
up:fullName 'tRNA-splicing endonuclease' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'tRNA-intron endonuclease' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'endA' .
?annotation3 a up:Function_Annotation ;
rdfs:comment "Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp." .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer; although the tetramer contains four active sites, only two participate in the cleavage. Therefore, it should be considered as a dimer of dimers.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the tRNA-intron endonuclease family. Archaeal short subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Active_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Active_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Active_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
_:640608 a rdf:Statement ;
up:attribution _:640594 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:640609 a rdf:Statement ;
up:attribution _:640595 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:640610 a rdf:Statement ;
up:attribution _:640596 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:640611 a rdf:Statement ;
up:attribution _:640597 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:640612 a rdf:Statement ;
up:attribution _:640598 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:640613 a rdf:Statement ;
up:attribution _:640599 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:640614 a rdf:Statement ;
up:attribution _:640600 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:640615 a rdf:Statement ;
up:attribution _:640601 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:640616 a rdf:Statement ;
up:attribution _:640602 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:640617 a rdf:Statement ;
up:attribution _:640603 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000213 .
_:640618 a rdf:Statement ;
up:attribution _:640604 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006388 .
_:640619 a rdf:Statement ;
up:source unirule:MF_01833 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:640620 a rdf:Statement ;
up:attribution _:640605 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:640621 a rdf:Statement ;
up:source unirule:MF_01833 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:640622 a rdf:Statement ;
up:attribution _:640606 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:640623 a rdf:Statement ;
up:source unirule:MF_01833 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:640624 a rdf:Statement ;
up:attribution _:640607 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01833
#Rule MF_01833 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-06-12
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01833 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_01833a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01833a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01833a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01833a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01833a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01833a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch30 faldo:location ?templateMotifSequenceMatchRegionQ5881931 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5881933 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58819MF_0183326 .
?templateMotifSequenceMatchRegionQ5881931 faldo:begin ?templateMotifSequenceMatchBeginQ5881932 .
?templateMotifSequenceMatchBeginQ5881932 faldo:position ?templateMotifSequenceMatchBeginPositionQ5881927 ;
faldo:reference isoform:Q58819-1 .
?templateMotifSequenceProfileAlignmentOperationQ5881933 edam:has_input signature:MF_01833 ;
rdf:type edam:operation_0300 .
?targetMotifMatch34 faldo:location ?targetMotifMatchRegionMatch35 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0183337 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58819MF_0183328 .
?targetMotifMatchRegionMatch35 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0183336 .
?targetMotifMatchRegionMatchBeginMF_0183336 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0183329 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0183337 edam:has_input signature:MF_01833 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58819MF_0183326, 1, (STRLEN(?templateMotifCigarQ58819MF_0183326) - STRLEN(REPLACE(?templateMotifCigarQ58819MF_0183326, CONCAT('^(?:-*[^-]){', STR(((115 - ?templateMotifSequenceMatchBeginPositionQ5881927) + 1)), '}'), '')))), '[a-z]', '')) AS ?step138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58819MF_0183328, 1, (STRLEN(?targetMotifMatchCigarQ58819MF_0183328) - STRLEN(REPLACE(?targetMotifMatchCigarQ58819MF_0183328, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58819MF_0183328, 1, (STRLEN(?targetMotifMatchCigarQ58819MF_0183328) - STRLEN(REPLACE(?targetMotifMatchCigarQ58819MF_0183328, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), '')))), '[^-]', ''))) AS ?step239) .
BIND(((?step239 + ?targetMotifMatchRegionMatchBeginPositionMF_0183329) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01833a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionQ5881946 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5881948 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58819MF_0183341 .
?templateMotifSequenceMatchRegionQ5881946 faldo:begin ?templateMotifSequenceMatchBeginQ5881947 .
?templateMotifSequenceMatchBeginQ5881947 faldo:position ?templateMotifSequenceMatchBeginPositionQ5881942 ;
faldo:reference isoform:Q58819-1 .
?templateMotifSequenceProfileAlignmentOperationQ5881948 edam:has_input signature:MF_01833 ;
rdf:type edam:operation_0300 .
?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0183352 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58819MF_0183343 .
?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0183351 .
?targetMotifMatchRegionMatchBeginMF_0183351 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0183344 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0183352 edam:has_input signature:MF_01833 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58819MF_0183341, 1, (STRLEN(?templateMotifCigarQ58819MF_0183341) - STRLEN(REPLACE(?templateMotifCigarQ58819MF_0183341, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionQ5881942) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58819MF_0183343, 1, (STRLEN(?targetMotifMatchCigarQ58819MF_0183343) - STRLEN(REPLACE(?targetMotifMatchCigarQ58819MF_0183343, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58819MF_0183343, 1, (STRLEN(?targetMotifMatchCigarQ58819MF_0183343) - STRLEN(REPLACE(?targetMotifMatchCigarQ58819MF_0183343, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0183344) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01833a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch60 faldo:location ?templateMotifSequenceMatchRegionQ5881961 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5881963 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58819MF_0183356 .
?templateMotifSequenceMatchRegionQ5881961 faldo:begin ?templateMotifSequenceMatchBeginQ5881962 .
?templateMotifSequenceMatchBeginQ5881962 faldo:position ?templateMotifSequenceMatchBeginPositionQ5881957 ;
faldo:reference isoform:Q58819-1 .
?templateMotifSequenceProfileAlignmentOperationQ5881963 edam:has_input signature:MF_01833 ;
rdf:type edam:operation_0300 .
?targetMotifMatch64 faldo:location ?targetMotifMatchRegionMatch65 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0183367 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58819MF_0183358 .
?targetMotifMatchRegionMatch65 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0183366 .
?targetMotifMatchRegionMatchBeginMF_0183366 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0183359 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0183367 edam:has_input signature:MF_01833 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58819MF_0183356, 1, (STRLEN(?templateMotifCigarQ58819MF_0183356) - STRLEN(REPLACE(?templateMotifCigarQ58819MF_0183356, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionQ5881957) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58819MF_0183358, 1, (STRLEN(?targetMotifMatchCigarQ58819MF_0183358) - STRLEN(REPLACE(?targetMotifMatchCigarQ58819MF_0183358, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58819MF_0183358, 1, (STRLEN(?targetMotifMatchCigarQ58819MF_0183358) - STRLEN(REPLACE(?targetMotifMatchCigarQ58819MF_0183358, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) .
BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0183359) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01833a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
}
"xsd:string |
