| http://purl.uniprot.org/unirules/MF_01834#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:640870 up:source unirule:MF_01834 .
_:640871 up:source unirule:MF_01834 .
_:640872 up:source unirule:MF_01834 .
_:640873 up:source unirule:MF_01834 .
_:640874 up:source unirule:MF_01834 .
_:640875 up:source unirule:MF_01834 .
_:640876 up:source unirule:MF_01834 .
_:640877 up:source unirule:MF_01834 .
_:640878 up:source unirule:MF_01834 .
_:640879 up:source unirule:MF_01834 .
_:640880 up:source unirule:MF_01834 .
_:640881 up:source unirule:MF_01834 .
_:640882 up:source unirule:MF_01834 .
_:640883 up:source unirule:MF_01834 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0000213 ,
GO:0006388 ,
keyword:456 ,
keyword:819 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.6.1.16' ;
up:fullName 'tRNA-splicing endonuclease' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'tRNA-intron endonuclease' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'endA' .
?annotation3 a up:Function_Annotation ;
rdfs:comment "Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5' and 3' splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp." .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the tRNA-intron endonuclease family. Archaeal long subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Active_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Active_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Active_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
_:640884 a rdf:Statement ;
up:attribution _:640870 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:640885 a rdf:Statement ;
up:attribution _:640871 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:640886 a rdf:Statement ;
up:attribution _:640872 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:640887 a rdf:Statement ;
up:attribution _:640873 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:640888 a rdf:Statement ;
up:attribution _:640874 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:640889 a rdf:Statement ;
up:attribution _:640875 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:640890 a rdf:Statement ;
up:attribution _:640876 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:640891 a rdf:Statement ;
up:attribution _:640877 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:640892 a rdf:Statement ;
up:attribution _:640878 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:640893 a rdf:Statement ;
up:attribution _:640879 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000213 .
_:640894 a rdf:Statement ;
up:attribution _:640880 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006388 .
_:640895 a rdf:Statement ;
up:source unirule:MF_01834 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:640896 a rdf:Statement ;
up:attribution _:640881 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:640897 a rdf:Statement ;
up:source unirule:MF_01834 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:640898 a rdf:Statement ;
up:attribution _:640882 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:640899 a rdf:Statement ;
up:source unirule:MF_01834 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:640900 a rdf:Statement ;
up:attribution _:640883 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01834
#Rule MF_01834 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-06-12
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01834 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_01833 .
})) .
BIND(URI(CONCAT(STR(?this), '#MF_01834a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01834a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01834a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01834a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01834a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01834a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch30 faldo:location ?templateMotifSequenceMatchRegionO0711831 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO0711833 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO07118MF_0183426 .
?templateMotifSequenceMatchRegionO0711831 faldo:begin ?templateMotifSequenceMatchBeginO0711832 .
?templateMotifSequenceMatchBeginO0711832 faldo:position ?templateMotifSequenceMatchBeginPositionO0711827 ;
faldo:reference isoform:O07118-1 .
?templateMotifSequenceProfileAlignmentOperationO0711833 edam:has_input signature:MF_01834 ;
rdf:type edam:operation_0300 .
?targetMotifMatch34 faldo:location ?targetMotifMatchRegionMatch35 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0183437 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO07118MF_0183428 .
?targetMotifMatchRegionMatch35 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0183436 .
?targetMotifMatchRegionMatchBeginMF_0183436 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0183429 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0183437 edam:has_input signature:MF_01834 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO07118MF_0183426, 1, (STRLEN(?templateMotifCigarO07118MF_0183426) - STRLEN(REPLACE(?templateMotifCigarO07118MF_0183426, CONCAT('^(?:-*[^-]){', STR(((274 - ?templateMotifSequenceMatchBeginPositionO0711827) + 1)), '}'), '')))), '[a-z]', '')) AS ?step138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO07118MF_0183428, 1, (STRLEN(?targetMotifMatchCigarO07118MF_0183428) - STRLEN(REPLACE(?targetMotifMatchCigarO07118MF_0183428, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO07118MF_0183428, 1, (STRLEN(?targetMotifMatchCigarO07118MF_0183428) - STRLEN(REPLACE(?targetMotifMatchCigarO07118MF_0183428, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), '')))), '[^-]', ''))) AS ?step239) .
BIND(((?step239 + ?targetMotifMatchRegionMatchBeginPositionMF_0183429) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01834a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionO0711846 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO0711848 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO07118MF_0183441 .
?templateMotifSequenceMatchRegionO0711846 faldo:begin ?templateMotifSequenceMatchBeginO0711847 .
?templateMotifSequenceMatchBeginO0711847 faldo:position ?templateMotifSequenceMatchBeginPositionO0711842 ;
faldo:reference isoform:O07118-1 .
?templateMotifSequenceProfileAlignmentOperationO0711848 edam:has_input signature:MF_01834 ;
rdf:type edam:operation_0300 .
?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0183452 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO07118MF_0183443 .
?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0183451 .
?targetMotifMatchRegionMatchBeginMF_0183451 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0183444 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0183452 edam:has_input signature:MF_01834 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO07118MF_0183441, 1, (STRLEN(?templateMotifCigarO07118MF_0183441) - STRLEN(REPLACE(?templateMotifCigarO07118MF_0183441, CONCAT('^(?:-*[^-]){', STR(((285 - ?templateMotifSequenceMatchBeginPositionO0711842) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO07118MF_0183443, 1, (STRLEN(?targetMotifMatchCigarO07118MF_0183443) - STRLEN(REPLACE(?targetMotifMatchCigarO07118MF_0183443, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO07118MF_0183443, 1, (STRLEN(?targetMotifMatchCigarO07118MF_0183443) - STRLEN(REPLACE(?targetMotifMatchCigarO07118MF_0183443, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0183444) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01834a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch60 faldo:location ?templateMotifSequenceMatchRegionO0711861 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO0711863 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO07118MF_0183456 .
?templateMotifSequenceMatchRegionO0711861 faldo:begin ?templateMotifSequenceMatchBeginO0711862 .
?templateMotifSequenceMatchBeginO0711862 faldo:position ?templateMotifSequenceMatchBeginPositionO0711857 ;
faldo:reference isoform:O07118-1 .
?templateMotifSequenceProfileAlignmentOperationO0711863 edam:has_input signature:MF_01834 ;
rdf:type edam:operation_0300 .
?targetMotifMatch64 faldo:location ?targetMotifMatchRegionMatch65 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0183467 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO07118MF_0183458 .
?targetMotifMatchRegionMatch65 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0183466 .
?targetMotifMatchRegionMatchBeginMF_0183466 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0183459 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0183467 edam:has_input signature:MF_01834 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO07118MF_0183456, 1, (STRLEN(?templateMotifCigarO07118MF_0183456) - STRLEN(REPLACE(?templateMotifCigarO07118MF_0183456, CONCAT('^(?:-*[^-]){', STR(((316 - ?templateMotifSequenceMatchBeginPositionO0711857) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO07118MF_0183458, 1, (STRLEN(?targetMotifMatchCigarO07118MF_0183458) - STRLEN(REPLACE(?targetMotifMatchCigarO07118MF_0183458, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO07118MF_0183458, 1, (STRLEN(?targetMotifMatchCigarO07118MF_0183458) - STRLEN(REPLACE(?targetMotifMatchCigarO07118MF_0183458, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) .
BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0183459) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01834a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
}
"xsd:string |
