| http://purl.uniprot.org/unirules/MF_01893#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01893#construct-template-86 |
| http://purl.uniprot.org/unirules/MF_01893#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01893#construct-template-62 |
| http://purl.uniprot.org/unirules/MF_01893#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01893#construct-template-85 |
| http://purl.uniprot.org/unirules/MF_01893#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01893#construct-template-61 |
| http://purl.uniprot.org/unirules/MF_01893#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01893#construct-template-20 |
| http://purl.uniprot.org/unirules/MF_01893#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01893#construct-template-44 |
| http://purl.uniprot.org/unirules/MF_01893#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01893#construct-template-68 |
| http://purl.uniprot.org/unirules/MF_01893#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01893#construct-template-43 |
| http://purl.uniprot.org/unirules/MF_01893#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01893#construct-template-67 |
| http://purl.uniprot.org/unirules/MF_01893#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01893#construct-template-42 |
| http://purl.uniprot.org/unirules/MF_01893#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01893#construct-template-66 |
| http://purl.uniprot.org/unirules/MF_01893#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01893#construct-template-41 |
| http://purl.uniprot.org/unirules/MF_01893#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01893#construct-template-65 |
| http://purl.uniprot.org/unirules/MF_01893#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01893#construct-template-89 |
| http://purl.uniprot.org/unirules/MF_01893#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01893#construct-template-80 |
| http://purl.uniprot.org/unirules/MF_01893#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01893#construct-template-60 |
| http://purl.uniprot.org/unirules/MF_01893#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01893#construct-template-84 |
| http://purl.uniprot.org/unirules/MF_01893#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01893#construct-template-83 |
| http://purl.uniprot.org/unirules/MF_01893#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01893#construct-template-82 |
| http://purl.uniprot.org/unirules/MF_01893#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01893#construct-template-81 |
| http://purl.uniprot.org/unirules/MF_01893#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01893#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01893#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01893#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01893#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01893#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:662611 up:source unirule:MF_01893 .
_:662612 up:source unirule:MF_01893 .
_:662613 up:source unirule:MF_01893 .
_:662614 up:source unirule:MF_01893 .
_:662615 up:source unirule:MF_01893 .
_:662616 up:source unirule:MF_01893 .
_:662617 up:source unirule:MF_01893 .
_:662618 up:source unirule:MF_01893 .
_:662619 up:source unirule:MF_01893 .
_:662620 up:source unirule:MF_01893 .
_:662621 up:source unirule:MF_01893 .
_:662622 up:source unirule:MF_01893 .
_:662623 up:source unirule:MF_01893 .
_:662624 up:source unirule:MF_01893 .
_:662625 up:source unirule:MF_01893 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0009982 ,
GO:0031119 ,
keyword:413 ,
keyword:694 ,
keyword:819 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.4.99.25' ;
up:fullName 'tRNA pseudouridine synthase Pus10' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'tRNA pseudouridine 54/55 synthase' ;
up:shortName 'Psi54/55 synthase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'pus10' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Responsible for synthesis of pseudouridine from uracil-54 and uracil-55 in the psi GC loop of transfer RNAs.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the pseudouridine synthase Pus10 family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf ?molecule20 .
?molecule20 rdfs:label 'substrate' .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf ?molecule28 .
?molecule28 rdfs:label 'substrate' .
_:662626 a rdf:Statement ;
up:attribution _:662611 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:662627 a rdf:Statement ;
up:attribution _:662612 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:662628 a rdf:Statement ;
up:attribution _:662613 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:662629 a rdf:Statement ;
up:attribution _:662614 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:662630 a rdf:Statement ;
up:attribution _:662615 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:662631 a rdf:Statement ;
up:attribution _:662616 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:662632 a rdf:Statement ;
up:attribution _:662617 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:662633 a rdf:Statement ;
up:attribution _:662618 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:662634 a rdf:Statement ;
up:attribution _:662619 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:662635 a rdf:Statement ;
up:attribution _:662620 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:662636 a rdf:Statement ;
up:attribution _:662621 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009982 .
_:662637 a rdf:Statement ;
up:attribution _:662622 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0031119 .
_:662638 a rdf:Statement ;
up:source unirule:MF_01893 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:662639 a rdf:Statement ;
up:attribution _:662623 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:662640 a rdf:Statement ;
up:source unirule:MF_01893 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:662641 a rdf:Statement ;
up:attribution _:662624 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:662642 a rdf:Statement ;
up:source unirule:MF_01893 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:662643 a rdf:Statement ;
up:attribution _:662625 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01893
#Rule MF_01893 Created by:? on:2011-03-03 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01893 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_01893a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01893a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01893a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01893a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01893a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01893a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch35 faldo:location ?templateMotifSequenceMatchRegionQ8U1R636 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8U1R638 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8U1R6MF_0189331 .
?templateMotifSequenceMatchRegionQ8U1R636 faldo:begin ?templateMotifSequenceMatchBeginQ8U1R637 .
?templateMotifSequenceMatchBeginQ8U1R637 faldo:position ?templateMotifSequenceMatchBeginPositionQ8U1R632 ;
faldo:reference isoform:Q8U1R6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8U1R638 edam:has_input signature:MF_01893 ;
rdf:type edam:operation_0300 .
?targetMotifMatch39 faldo:location ?targetMotifMatchRegionMatch40 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0189342 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8U1R6MF_0189333 .
?targetMotifMatchRegionMatch40 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0189341 .
?targetMotifMatchRegionMatchBeginMF_0189341 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0189334 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0189342 edam:has_input signature:MF_01893 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8U1R6MF_0189331, 1, (STRLEN(?templateMotifCigarQ8U1R6MF_0189331) - STRLEN(REPLACE(?templateMotifCigarQ8U1R6MF_0189331, CONCAT('^(?:-*[^-]){', STR(((210 - ?templateMotifSequenceMatchBeginPositionQ8U1R632) + 1)), '}'), '')))), '[a-z]', '')) AS ?step143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8U1R6MF_0189333, 1, (STRLEN(?targetMotifMatchCigarQ8U1R6MF_0189333) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1R6MF_0189333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8U1R6MF_0189333, 1, (STRLEN(?targetMotifMatchCigarQ8U1R6MF_0189333) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1R6MF_0189333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), '')))), '[^-]', ''))) AS ?step244) .
BIND(((?step244 + ?targetMotifMatchRegionMatchBeginPositionMF_0189334) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01893a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch50 faldo:location ?templateMotifSequenceMatchRegionQ8U1R651 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8U1R653 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8U1R6MF_0189346 .
?templateMotifSequenceMatchRegionQ8U1R651 faldo:begin ?templateMotifSequenceMatchBeginQ8U1R652 .
?templateMotifSequenceMatchBeginQ8U1R652 faldo:position ?templateMotifSequenceMatchBeginPositionQ8U1R647 ;
faldo:reference isoform:Q8U1R6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8U1R653 edam:has_input signature:MF_01893 ;
rdf:type edam:operation_0300 .
?targetMotifMatch54 faldo:location ?targetMotifMatchRegionMatch55 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0189357 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8U1R6MF_0189348 .
?targetMotifMatchRegionMatch55 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0189356 .
?targetMotifMatchRegionMatchBeginMF_0189356 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0189349 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0189357 edam:has_input signature:MF_01893 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8U1R6MF_0189346, 1, (STRLEN(?templateMotifCigarQ8U1R6MF_0189346) - STRLEN(REPLACE(?templateMotifCigarQ8U1R6MF_0189346, CONCAT('^(?:-*[^-]){', STR(((274 - ?templateMotifSequenceMatchBeginPositionQ8U1R647) + 1)), '}'), '')))), '[a-z]', '')) AS ?step158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8U1R6MF_0189348, 1, (STRLEN(?targetMotifMatchCigarQ8U1R6MF_0189348) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1R6MF_0189348, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8U1R6MF_0189348, 1, (STRLEN(?targetMotifMatchCigarQ8U1R6MF_0189348) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1R6MF_0189348, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), '')))), '[^-]', ''))) AS ?step259) .
BIND(((?step259 + ?targetMotifMatchRegionMatchBeginPositionMF_0189349) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01893a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch65 faldo:location ?templateMotifSequenceMatchRegionQ8U1R666 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8U1R668 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8U1R6MF_0189361 .
?templateMotifSequenceMatchRegionQ8U1R666 faldo:begin ?templateMotifSequenceMatchBeginQ8U1R667 .
?templateMotifSequenceMatchBeginQ8U1R667 faldo:position ?templateMotifSequenceMatchBeginPositionQ8U1R662 ;
faldo:reference isoform:Q8U1R6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8U1R668 edam:has_input signature:MF_01893 ;
rdf:type edam:operation_0300 .
?targetMotifMatch69 faldo:location ?targetMotifMatchRegionMatch70 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0189372 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8U1R6MF_0189363 .
?targetMotifMatchRegionMatch70 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0189371 .
?targetMotifMatchRegionMatchBeginMF_0189371 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0189364 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0189372 edam:has_input signature:MF_01893 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8U1R6MF_0189361, 1, (STRLEN(?templateMotifCigarQ8U1R6MF_0189361) - STRLEN(REPLACE(?templateMotifCigarQ8U1R6MF_0189361, CONCAT('^(?:-*[^-]){', STR(((346 - ?templateMotifSequenceMatchBeginPositionQ8U1R662) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8U1R6MF_0189363, 1, (STRLEN(?targetMotifMatchCigarQ8U1R6MF_0189363) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1R6MF_0189363, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8U1R6MF_0189363, 1, (STRLEN(?targetMotifMatchCigarQ8U1R6MF_0189363) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1R6MF_0189363, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0189364) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01893a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_01893 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01893#construct |
