| http://purl.uniprot.org/unirules/MF_01894#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:662957 up:source unirule:MF_01894 .
_:662958 up:source unirule:MF_01894 .
_:662959 up:source unirule:MF_01894 .
_:662960 up:source unirule:MF_01894 .
_:662961 up:source unirule:MF_01894 .
_:662962 up:source unirule:MF_01894 .
_:662963 up:source unirule:MF_01894 .
_:662964 up:source unirule:MF_01894 .
_:662965 up:source unirule:MF_01894 .
_:662966 up:source unirule:MF_01894 .
_:662967 up:source unirule:MF_01894 .
_:662968 up:source unirule:MF_01894 .
_:662969 up:source unirule:MF_01894 .
_:662970 up:source unirule:MF_01894 .
_:662971 up:source unirule:MF_01894 .
_:662972 up:source unirule:MF_01894 .
_:662973 up:source unirule:MF_01894 .
_:662974 up:source unirule:MF_01894 .
_:662975 up:source unirule:MF_01894 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0003677 ,
GO:0005524 ,
GO:0005737 ,
GO:0006260 ,
GO:0007059 ,
keyword:175 ,
keyword:238 ,
keyword:547 ,
keyword:67 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Chromosome partition protein Smc' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'smc' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Required for chromosome condensation and partitioning.' .
?annotation3 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation4 a up:Subcellular_Location_Annotation .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Domain_Annotation ;
rdfs:comment 'Contains large globular domains required for ATP hydrolysis at each terminus and a third globular domain forming a flexible hinge near the middle of the molecule. These domains are separated by coiled-coil structures.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the SMC family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:30616 .
?sam15 up:classifiedWith keyword:175 .
?coiledCoil16 faldo:begin ?coiledCoilb17 ;
faldo:end ?coiledCoile18 .
?coiledCoilb17 faldo:position ?coiledCoilbp19 .
?coiledCoile18 faldo:position ?coiledCoilep20 .
?keyword21 up:range ?coiledCoil16 .
_:662976 a rdf:Statement ;
up:attribution _:662957 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:662977 a rdf:Statement ;
up:attribution _:662958 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:662978 a rdf:Statement ;
up:attribution _:662959 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:662979 a rdf:Statement ;
up:attribution _:662960 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:662980 a rdf:Statement ;
up:attribution _:662961 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:662981 a rdf:Statement ;
up:attribution _:662962 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:662982 a rdf:Statement ;
up:attribution _:662963 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:662983 a rdf:Statement ;
up:attribution _:662964 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:662984 a rdf:Statement ;
up:attribution _:662965 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:175 .
_:662985 a rdf:Statement ;
up:attribution _:662966 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:662986 a rdf:Statement ;
up:attribution _:662967 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:662987 a rdf:Statement ;
up:attribution _:662968 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:662988 a rdf:Statement ;
up:attribution _:662969 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:662989 a rdf:Statement ;
up:attribution _:662970 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:662990 a rdf:Statement ;
up:attribution _:662971 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0007059 .
_:662991 a rdf:Statement ;
up:attribution _:662972 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006260 .
_:662992 a rdf:Statement ;
up:attribution _:662973 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:662993 a rdf:Statement ;
up:source unirule:MF_01894 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:662994 a rdf:Statement ;
up:attribution _:662974 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:662995 a rdf:Statement ;
up:attribution _:662975 ;
rdf:subject ?sam15 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:175 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01894
#Rule MF_01894 Created by:? on:2011-04-15 Modified by:Edouard de Castro on:2023-06-01
VALUES ?supertaxon22 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01894 .
?thisOrganism rdfs:subClassOf+ ?supertaxon22 .
BIND(URI(CONCAT(STR(?this), '#MF_01894a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01894a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01894a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01894a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01894a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01894a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch27 faldo:location ?templateMotifSequenceMatchRegionQ8TZY228 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8TZY230 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8TZY2MF_0189423 .
?templateMotifSequenceMatchRegionQ8TZY228 faldo:begin ?templateMotifSequenceMatchBeginQ8TZY229 .
?templateMotifSequenceMatchBeginQ8TZY229 faldo:position ?templateMotifSequenceMatchBeginPositionQ8TZY224 ;
faldo:reference isoform:Q8TZY2-1 .
?templateMotifSequenceProfileAlignmentOperationQ8TZY230 edam:has_input signature:MF_01894 ;
rdf:type edam:operation_0300 .
?targetMotifMatch31 faldo:location ?targetMotifMatchRegionMatch32 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0189434 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8TZY2MF_0189425 .
?targetMotifMatchRegionMatch32 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0189433 .
?targetMotifMatchRegionMatchBeginMF_0189433 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0189426 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0189434 edam:has_input signature:MF_01894 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8TZY2MF_0189423, 1, (STRLEN(?templateMotifCigarQ8TZY2MF_0189423) - STRLEN(REPLACE(?templateMotifCigarQ8TZY2MF_0189423, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionQ8TZY224) + 1)), '}'), '')))), '[a-z]', '')) AS ?step135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8TZY2MF_0189425, 1, (STRLEN(?targetMotifMatchCigarQ8TZY2MF_0189425) - STRLEN(REPLACE(?targetMotifMatchCigarQ8TZY2MF_0189425, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8TZY2MF_0189425, 1, (STRLEN(?targetMotifMatchCigarQ8TZY2MF_0189425) - STRLEN(REPLACE(?targetMotifMatchCigarQ8TZY2MF_0189425, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step135), '}'), '')))), '[^-]', ''))) AS ?step236) .
BIND(((?step236 + ?targetMotifMatchRegionMatchBeginPositionMF_0189426) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8TZY2MF_0189423, 1, (STRLEN(?templateMotifCigarQ8TZY2MF_0189423) - STRLEN(REPLACE(?templateMotifCigarQ8TZY2MF_0189423, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionQ8TZY224) + 1)), '}'), '')))), '[a-z]', '')) AS ?step137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8TZY2MF_0189425, 1, (STRLEN(?targetMotifMatchCigarQ8TZY2MF_0189425) - STRLEN(REPLACE(?targetMotifMatchCigarQ8TZY2MF_0189425, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8TZY2MF_0189425, 1, (STRLEN(?targetMotifMatchCigarQ8TZY2MF_0189425) - STRLEN(REPLACE(?targetMotifMatchCigarQ8TZY2MF_0189425, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), '')))), '[^-]', ''))) AS ?step238) .
BIND(((?step238 + ?targetMotifMatchRegionMatchBeginPositionMF_0189426) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER (REGEX('[APQ]NG[SACG]GK[ST]N', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01894a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:annotation ?samcc40 ;
up:sequence ?thisSequence .
?samcc40 up:range ?samccr41 ;
rdf:type up:Coiled_Coil_Annotation .
?samccr41 faldo:begin ?samccb42 ;
faldo:end ?samcce43 .
?samccb42 faldo:position ?samccbp44 ;
faldo:reference ?thisSequence .
?samcce43 faldo:position ?samccep45 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam15) .
}
BIND(URI(CONCAT(STR(?this), '#MF_01894a21')) AS ?keyword21) .
}
"xsd:string |
