| http://purl.uniprot.org/unirules/MF_01905#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:666520 up:source unirule:MF_01905 .
_:666521 up:source unirule:MF_01905 .
_:666522 up:source unirule:MF_01905 .
_:666523 up:source unirule:MF_01905 .
_:666524 up:source unirule:MF_01905 .
_:666525 up:source unirule:MF_01905 .
_:666526 up:source unirule:MF_01905 .
_:666527 up:source unirule:MF_01905 .
_:666528 up:source unirule:MF_01905 .
_:666529 up:source unirule:MF_01905 .
_:666530 up:source unirule:MF_01905 .
_:666531 up:source unirule:MF_01905 .
_:666532 up:source unirule:MF_01905 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0008061 ,
keyword:147 ,
keyword:732 ,
keyword:964 ;
up:precursor "true"^^xsd:boolean ;
up:recommendedName ?name0 .
?name0 up:fullName 'GlcNAc-binding protein A' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'gbpA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Probably interacts with GlcNAc residues. May promote attachment to both epithelial cell surfaces and chitin.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the GbpA family.' .
?pfs6 up:annotation ?annotation7 .
?annotation7 faldo:begin ?pfsb8 ;
faldo:end ?pfse9 ;
rdf:type up:Domain_Extent_Annotation ;
rdfs:comment 'Chitin-binding type-4' .
?pfsb8 faldo:position ?thisPositionOn10 ;
rdf:type faldo:ExactPosition .
?pfse9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Domain_Extent_Annotation ;
rdfs:comment 'Chitin-binding type-3' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?sam18 up:classifiedWith keyword:732 .
?signal19 faldo:begin ?signalb20 ;
faldo:end ?signale21 .
?signalb20 faldo:position ?signalbp22 .
?signale21 faldo:position ?signalep23 .
?keyword24 up:range ?signal19 .
_:666533 a rdf:Statement ;
up:attribution _:666520 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:666534 a rdf:Statement ;
up:attribution _:666521 ;
rdf:subject ?this ;
rdf:predicate up:precursor ;
rdf:object "true"^^xsd:boolean .
_:666535 a rdf:Statement ;
up:attribution _:666522 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:666536 a rdf:Statement ;
up:attribution _:666523 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:666537 a rdf:Statement ;
up:attribution _:666524 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:666538 a rdf:Statement ;
up:attribution _:666525 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:666539 a rdf:Statement ;
up:attribution _:666526 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:964 .
_:666540 a rdf:Statement ;
up:attribution _:666527 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:147 .
_:666541 a rdf:Statement ;
up:attribution _:666528 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
_:666542 a rdf:Statement ;
up:attribution _:666529 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008061 .
_:666543 a rdf:Statement ;
up:source unirule:MF_01905 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:666544 a rdf:Statement ;
up:attribution _:666530 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:666545 a rdf:Statement ;
up:source unirule:MF_01905 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:666546 a rdf:Statement ;
up:attribution _:666531 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:666547 a rdf:Statement ;
up:attribution _:666532 ;
rdf:subject ?sam18 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01905
#Rule MF_01905 Created by:? on:2006-03-08 Modified by:Edouard de Castro on:2019-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01905 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_01905a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01905a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01905a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01905a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch29 faldo:location ?templateMotifSequenceMatchRegionQ9KLD530 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9KLD532 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9KLD5MF_0190525 .
?templateMotifSequenceMatchRegionQ9KLD530 faldo:begin ?templateMotifSequenceMatchBeginQ9KLD531 .
?templateMotifSequenceMatchBeginQ9KLD531 faldo:position ?templateMotifSequenceMatchBeginPositionQ9KLD526 ;
faldo:reference isoform:Q9KLD5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9KLD532 edam:has_input signature:MF_01905 ;
rdf:type edam:operation_0300 .
?targetMotifMatch33 faldo:location ?targetMotifMatchRegionMatch34 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0190536 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9KLD5MF_0190527 .
?targetMotifMatchRegionMatch34 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0190535 .
?targetMotifMatchRegionMatchBeginMF_0190535 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0190528 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0190536 edam:has_input signature:MF_01905 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9KLD5MF_0190525, 1, (STRLEN(?templateMotifCigarQ9KLD5MF_0190525) - STRLEN(REPLACE(?templateMotifCigarQ9KLD5MF_0190525, CONCAT('^(?:-*[^-]){', STR(((24 - ?templateMotifSequenceMatchBeginPositionQ9KLD526) + 1)), '}'), '')))), '[a-z]', '')) AS ?step137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9KLD5MF_0190527, 1, (STRLEN(?targetMotifMatchCigarQ9KLD5MF_0190527) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KLD5MF_0190527, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9KLD5MF_0190527, 1, (STRLEN(?targetMotifMatchCigarQ9KLD5MF_0190527) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KLD5MF_0190527, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), '')))), '[^-]', ''))) AS ?step238) .
BIND(((?step238 + ?targetMotifMatchRegionMatchBeginPositionMF_0190528) - 1) AS ?thisPositionOn10) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9KLD5MF_0190525, 1, (STRLEN(?templateMotifCigarQ9KLD5MF_0190525) - STRLEN(REPLACE(?templateMotifCigarQ9KLD5MF_0190525, CONCAT('^(?:-*[^-]){', STR(((201 - ?templateMotifSequenceMatchBeginPositionQ9KLD526) + 1)), '}'), '')))), '[a-z]', '')) AS ?step139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9KLD5MF_0190527, 1, (STRLEN(?targetMotifMatchCigarQ9KLD5MF_0190527) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KLD5MF_0190527, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9KLD5MF_0190527, 1, (STRLEN(?targetMotifMatchCigarQ9KLD5MF_0190527) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KLD5MF_0190527, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step139), '}'), '')))), '[^-]', ''))) AS ?step240) .
BIND(((?step240 + ?targetMotifMatchRegionMatchBeginPositionMF_0190528) - 1) AS ?thisPositionOn11) .
BIND(?this AS ?pfs1t41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb8) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse9) .
FILTER ((BOUND(?thisPositionOn10) && BOUND(?thisPositionOn11))) .
BIND(URI(CONCAT(STR(?this), '#MF_01905a7')) AS ?annotation7) .
BIND(?this AS ?pfs6) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch46 faldo:location ?templateMotifSequenceMatchRegionQ9KLD547 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9KLD549 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9KLD5MF_0190542 .
?templateMotifSequenceMatchRegionQ9KLD547 faldo:begin ?templateMotifSequenceMatchBeginQ9KLD548 .
?templateMotifSequenceMatchBeginQ9KLD548 faldo:position ?templateMotifSequenceMatchBeginPositionQ9KLD543 ;
faldo:reference isoform:Q9KLD5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9KLD549 edam:has_input signature:MF_01905 ;
rdf:type edam:operation_0300 .
?targetMotifMatch50 faldo:location ?targetMotifMatchRegionMatch51 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0190553 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9KLD5MF_0190544 .
?targetMotifMatchRegionMatch51 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0190552 .
?targetMotifMatchRegionMatchBeginMF_0190552 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0190545 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0190553 edam:has_input signature:MF_01905 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9KLD5MF_0190542, 1, (STRLEN(?templateMotifCigarQ9KLD5MF_0190542) - STRLEN(REPLACE(?templateMotifCigarQ9KLD5MF_0190542, CONCAT('^(?:-*[^-]){', STR(((437 - ?templateMotifSequenceMatchBeginPositionQ9KLD543) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9KLD5MF_0190544, 1, (STRLEN(?targetMotifMatchCigarQ9KLD5MF_0190544) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KLD5MF_0190544, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9KLD5MF_0190544, 1, (STRLEN(?targetMotifMatchCigarQ9KLD5MF_0190544) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KLD5MF_0190544, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0190545) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9KLD5MF_0190542, 1, (STRLEN(?templateMotifCigarQ9KLD5MF_0190542) - STRLEN(REPLACE(?templateMotifCigarQ9KLD5MF_0190542, CONCAT('^(?:-*[^-]){', STR(((478 - ?templateMotifSequenceMatchBeginPositionQ9KLD543) + 1)), '}'), '')))), '[a-z]', '')) AS ?step156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9KLD5MF_0190544, 1, (STRLEN(?targetMotifMatchCigarQ9KLD5MF_0190544) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KLD5MF_0190544, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9KLD5MF_0190544, 1, (STRLEN(?targetMotifMatchCigarQ9KLD5MF_0190544) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KLD5MF_0190544, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), '')))), '[^-]', ''))) AS ?step257) .
BIND(((?step257 + ?targetMotifMatchRegionMatchBeginPositionMF_0190545) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((BOUND(?thisPositionOn16) && BOUND(?thisPositionOn17))) .
BIND(URI(CONCAT(STR(?this), '#MF_01905a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:annotation ?samsignal59 ;
up:sequence ?thisSequence .
?samsignal59 up:range ?samsignalr60 ;
rdf:type up:Signal_Peptide_Annotation .
?samsignalr60 faldo:begin ?samsignalb61 ;
faldo:end ?samsignale62 .
?samsignalb61 faldo:position ?samsignalbp63 ;
faldo:reference ?thisSequence .
?samsignale62 faldo:position ?samsignalep64 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam18) .
}
BIND(URI(CONCAT(STR(?this), '#MF_01905a24')) AS ?keyword24) .
}
"xsd:string |
