| http://purl.uniprot.org/unirules/MF_01920#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01920#construct-template-82 |
| http://purl.uniprot.org/unirules/MF_01920#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01920#construct-template-81 |
| http://purl.uniprot.org/unirules/MF_01920#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01920#construct-template-7 |
| http://purl.uniprot.org/unirules/MF_01920#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01920#construct-template-80 |
| http://purl.uniprot.org/unirules/MF_01920#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01920#construct-template-22 |
| http://purl.uniprot.org/unirules/MF_01920#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01920#construct-template-67 |
| http://purl.uniprot.org/unirules/MF_01920#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01920#construct-template-69 |
| http://purl.uniprot.org/unirules/MF_01920#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01920#construct-template-41 |
| http://purl.uniprot.org/unirules/MF_01920#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01920#construct-template-29 |
| http://purl.uniprot.org/unirules/MF_01920#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01920#construct-template-87 |
| http://purl.uniprot.org/unirules/MF_01920#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01920#construct-template-74 |
| http://purl.uniprot.org/unirules/MF_01920#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01920#construct-template-73 |
| http://purl.uniprot.org/unirules/MF_01920#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01920#construct-template-72 |
| http://purl.uniprot.org/unirules/MF_01920#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01920#construct-template-71 |
| http://purl.uniprot.org/unirules/MF_01920#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01920#construct-template-70 |
| http://purl.uniprot.org/unirules/MF_01920#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01920#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01920#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01920#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01920#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01920#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:671044 up:source unirule:MF_01920 .
_:671045 up:source unirule:MF_01920 .
_:671046 up:source unirule:MF_01920 .
_:671047 up:source unirule:MF_01920 .
_:671048 up:source unirule:MF_01920 .
_:671049 up:source unirule:MF_01920 .
_:671050 up:source unirule:MF_01920 .
_:671051 up:source unirule:MF_01920 .
_:671052 up:source unirule:MF_01920 .
_:671053 up:source unirule:MF_01920 .
_:671054 up:source unirule:MF_01920 .
_:671055 up:source unirule:MF_01920 .
_:671056 up:source unirule:MF_01920 .
_:671057 up:source unirule:MF_01920 .
_:671058 up:source unirule:MF_01920 .
_:671059 up:source unirule:MF_01920 .
_:671060 up:source unirule:MF_01920 .
_:671061 up:source unirule:MF_01920 .
_:671062 up:source unirule:MF_01920 .
_:671063 up:source unirule:MF_01920 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0003697 ,
GO:0005524 ,
GO:0006260 ,
GO:0043138 ,
keyword:235 ,
keyword:238 ,
keyword:347 ,
keyword:378 ,
keyword:413 ,
keyword:547 ,
keyword:67 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.6.2.4' ;
up:fullName 'ATP-dependent DNA helicase Rep' ;
rdf:type up:Structured_Name .
?name1 up:fullName "DNA 3'-5' helicase Rep" ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'rep' .
?annotation3 a up:Function_Annotation ;
rdfs:comment "Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction." .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the helicase family. UvrD subfamily.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:30616 .
_:671064 a rdf:Statement ;
up:attribution _:671044 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:671065 a rdf:Statement ;
up:attribution _:671045 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:671066 a rdf:Statement ;
up:attribution _:671046 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:671067 a rdf:Statement ;
up:attribution _:671047 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:671068 a rdf:Statement ;
up:attribution _:671048 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:671069 a rdf:Statement ;
up:attribution _:671049 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:671070 a rdf:Statement ;
up:attribution _:671050 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:671071 a rdf:Statement ;
up:attribution _:671051 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:671072 a rdf:Statement ;
up:attribution _:671052 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:671073 a rdf:Statement ;
up:attribution _:671053 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:235 .
_:671074 a rdf:Statement ;
up:attribution _:671054 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:671075 a rdf:Statement ;
up:attribution _:671055 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:347 .
_:671076 a rdf:Statement ;
up:attribution _:671056 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:671077 a rdf:Statement ;
up:attribution _:671057 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:671078 a rdf:Statement ;
up:attribution _:671058 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:671079 a rdf:Statement ;
up:attribution _:671059 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0043138 .
_:671080 a rdf:Statement ;
up:attribution _:671060 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:671081 a rdf:Statement ;
up:attribution _:671061 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003697 .
_:671082 a rdf:Statement ;
up:attribution _:671062 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006260 .
_:671083 a rdf:Statement ;
up:source unirule:MF_01920 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:671084 a rdf:Statement ;
up:attribution _:671063 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01920
#Rule MF_01920 Created by:? on:2014-05-12 Modified by:Catherine Rivoire on:2025-01-14
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01920 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_01920a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01920a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01920a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01920a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01920a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01920a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01920a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch21 faldo:location ?templateMotifSequenceMatchRegionP0998022 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0998024 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP09980MF_0192017 .
?templateMotifSequenceMatchRegionP0998022 faldo:begin ?templateMotifSequenceMatchBeginP0998023 .
?templateMotifSequenceMatchBeginP0998023 faldo:position ?templateMotifSequenceMatchBeginPositionP0998018 ;
faldo:reference isoform:P09980-1 .
?templateMotifSequenceProfileAlignmentOperationP0998024 edam:has_input signature:MF_01920 ;
rdf:type edam:operation_0300 .
?targetMotifMatch25 faldo:location ?targetMotifMatchRegionMatch26 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0192028 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP09980MF_0192019 .
?targetMotifMatchRegionMatch26 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0192027 .
?targetMotifMatchRegionMatchBeginMF_0192027 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0192020 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0192028 edam:has_input signature:MF_01920 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP09980MF_0192017, 1, (STRLEN(?templateMotifCigarP09980MF_0192017) - STRLEN(REPLACE(?templateMotifCigarP09980MF_0192017, CONCAT('^(?:-*[^-]){', STR(((278 - ?templateMotifSequenceMatchBeginPositionP0998018) + 1)), '}'), '')))), '[a-z]', '')) AS ?step129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP09980MF_0192019, 1, (STRLEN(?targetMotifMatchCigarP09980MF_0192019) - STRLEN(REPLACE(?targetMotifMatchCigarP09980MF_0192019, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP09980MF_0192019, 1, (STRLEN(?targetMotifMatchCigarP09980MF_0192019) - STRLEN(REPLACE(?targetMotifMatchCigarP09980MF_0192019, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), '')))), '[^-]', ''))) AS ?step230) .
BIND(((?step230 + ?targetMotifMatchRegionMatchBeginPositionMF_0192020) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01920a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_01920 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01920#construct |
