| http://purl.uniprot.org/unirules/MF_01940#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:678815 up:source unirule:MF_01940 .
_:678816 up:source unirule:MF_01940 .
_:678817 up:source unirule:MF_01940 .
_:678818 up:source unirule:MF_01940 .
_:678819 up:source unirule:MF_01940 .
_:678820 up:source unirule:MF_01940 .
_:678821 up:source unirule:MF_01940 .
_:678822 up:source unirule:MF_01940 .
_:678823 up:source unirule:MF_01940 .
_:678824 up:source unirule:MF_01940 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ;
up:classifiedWith GO:0008081 ,
keyword:378 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.1.4.58' ;
up:fullName "RNA 2',3'-cyclic phosphodiesterase" ;
up:shortName "RNA 2',3'-CPDase" ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment "Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'-phosphomonoester." .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the 2H phosphoesterase superfamily. ThpR family.' .
?pfs6 up:annotation ?annotation7 .
?annotation7 faldo:begin ?pfsb8 ;
faldo:end ?pfse9 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'HXTX 1' .
?pfsb8 faldo:position ?thisPositionOn10 ;
rdf:type faldo:ExactPosition .
?pfse9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'HXTX 2' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
_:678825 a rdf:Statement ;
up:attribution _:678815 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:678826 a rdf:Statement ;
up:attribution _:678816 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:678827 a rdf:Statement ;
up:attribution _:678817 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:678828 a rdf:Statement ;
up:attribution _:678818 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:678829 a rdf:Statement ;
up:attribution _:678819 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:678830 a rdf:Statement ;
up:attribution _:678820 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008081 .
_:678831 a rdf:Statement ;
up:source unirule:MF_01940 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:678832 a rdf:Statement ;
up:attribution _:678821 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:678833 a rdf:Statement ;
up:source unirule:MF_01940 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:678834 a rdf:Statement ;
up:attribution _:678822 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:678835 a rdf:Statement ;
up:source unirule:MF_01940 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:678836 a rdf:Statement ;
up:attribution _:678823 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:678837 a rdf:Statement ;
up:source unirule:MF_01940 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:678838 a rdf:Statement ;
up:attribution _:678824 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01940
#Rule MF_01940 Created by:? on:2014-11-28 Modified by:Edouard de Castro on:2023-06-01
VALUES ?supertaxon30 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01940 .
?thisOrganism rdfs:subClassOf+ ?supertaxon30 .
BIND(URI(CONCAT(STR(?this), '#MF_01940a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01940a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01940a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01940a4')) AS ?annotation4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch35 faldo:location ?templateMotifSequenceMatchRegionP3702536 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3702538 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37025MF_0194031 .
?templateMotifSequenceMatchRegionP3702536 faldo:begin ?templateMotifSequenceMatchBeginP3702537 .
?templateMotifSequenceMatchBeginP3702537 faldo:position ?templateMotifSequenceMatchBeginPositionP3702532 ;
faldo:reference isoform:P37025-1 .
?templateMotifSequenceProfileAlignmentOperationP3702538 edam:has_input signature:MF_01940 ;
rdf:type edam:operation_0300 .
?targetMotifMatch39 faldo:location ?targetMotifMatchRegionMatch40 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0194042 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37025MF_0194033 .
?targetMotifMatchRegionMatch40 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0194041 .
?targetMotifMatchRegionMatchBeginMF_0194041 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0194034 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0194042 edam:has_input signature:MF_01940 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37025MF_0194031, 1, (STRLEN(?templateMotifCigarP37025MF_0194031) - STRLEN(REPLACE(?templateMotifCigarP37025MF_0194031, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionP3702532) + 1)), '}'), '')))), '[a-z]', '')) AS ?step143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37025MF_0194033, 1, (STRLEN(?targetMotifMatchCigarP37025MF_0194033) - STRLEN(REPLACE(?targetMotifMatchCigarP37025MF_0194033, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37025MF_0194033, 1, (STRLEN(?targetMotifMatchCigarP37025MF_0194033) - STRLEN(REPLACE(?targetMotifMatchCigarP37025MF_0194033, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), '')))), '[^-]', ''))) AS ?step244) .
BIND(((?step244 + ?targetMotifMatchRegionMatchBeginPositionMF_0194034) - 1) AS ?thisPositionOn10) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37025MF_0194031, 1, (STRLEN(?templateMotifCigarP37025MF_0194031) - STRLEN(REPLACE(?templateMotifCigarP37025MF_0194031, CONCAT('^(?:-*[^-]){', STR(((46 - ?templateMotifSequenceMatchBeginPositionP3702532) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37025MF_0194033, 1, (STRLEN(?targetMotifMatchCigarP37025MF_0194033) - STRLEN(REPLACE(?targetMotifMatchCigarP37025MF_0194033, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37025MF_0194033, 1, (STRLEN(?targetMotifMatchCigarP37025MF_0194033) - STRLEN(REPLACE(?targetMotifMatchCigarP37025MF_0194033, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) .
BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0194034) - 1) AS ?thisPositionOn11) .
BIND(?this AS ?pfs1t47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb8) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse9) .
FILTER (REGEX('H[ARNDCQEGHILKMFPSTWYVBZJUOX]T[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn10, (?thisPositionOn11 - ?thisPositionOn10)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01940a7')) AS ?annotation7) .
BIND(?this AS ?pfs6) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch52 faldo:location ?templateMotifSequenceMatchRegionP3702553 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3702555 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37025MF_0194048 .
?templateMotifSequenceMatchRegionP3702553 faldo:begin ?templateMotifSequenceMatchBeginP3702554 .
?templateMotifSequenceMatchBeginP3702554 faldo:position ?templateMotifSequenceMatchBeginPositionP3702549 ;
faldo:reference isoform:P37025-1 .
?templateMotifSequenceProfileAlignmentOperationP3702555 edam:has_input signature:MF_01940 ;
rdf:type edam:operation_0300 .
?targetMotifMatch56 faldo:location ?targetMotifMatchRegionMatch57 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0194059 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37025MF_0194050 .
?targetMotifMatchRegionMatch57 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0194058 .
?targetMotifMatchRegionMatchBeginMF_0194058 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0194051 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0194059 edam:has_input signature:MF_01940 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37025MF_0194048, 1, (STRLEN(?templateMotifCigarP37025MF_0194048) - STRLEN(REPLACE(?templateMotifCigarP37025MF_0194048, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionP3702549) + 1)), '}'), '')))), '[a-z]', '')) AS ?step160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37025MF_0194050, 1, (STRLEN(?targetMotifMatchCigarP37025MF_0194050) - STRLEN(REPLACE(?targetMotifMatchCigarP37025MF_0194050, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37025MF_0194050, 1, (STRLEN(?targetMotifMatchCigarP37025MF_0194050) - STRLEN(REPLACE(?targetMotifMatchCigarP37025MF_0194050, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), '')))), '[^-]', ''))) AS ?step261) .
BIND(((?step261 + ?targetMotifMatchRegionMatchBeginPositionMF_0194051) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37025MF_0194048, 1, (STRLEN(?templateMotifCigarP37025MF_0194048) - STRLEN(REPLACE(?templateMotifCigarP37025MF_0194048, CONCAT('^(?:-*[^-]){', STR(((128 - ?templateMotifSequenceMatchBeginPositionP3702549) + 1)), '}'), '')))), '[a-z]', '')) AS ?step162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37025MF_0194050, 1, (STRLEN(?targetMotifMatchCigarP37025MF_0194050) - STRLEN(REPLACE(?targetMotifMatchCigarP37025MF_0194050, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37025MF_0194050, 1, (STRLEN(?targetMotifMatchCigarP37025MF_0194050) - STRLEN(REPLACE(?targetMotifMatchCigarP37025MF_0194050, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), '')))), '[^-]', ''))) AS ?step263) .
BIND(((?step263 + ?targetMotifMatchRegionMatchBeginPositionMF_0194051) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER (REGEX('H[ARNDCQEGHILKMFPSTWYVBZJUOX]T[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01940a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch69 faldo:location ?templateMotifSequenceMatchRegionP3702570 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3702572 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37025MF_0194065 .
?templateMotifSequenceMatchRegionP3702570 faldo:begin ?templateMotifSequenceMatchBeginP3702571 .
?templateMotifSequenceMatchBeginP3702571 faldo:position ?templateMotifSequenceMatchBeginPositionP3702566 ;
faldo:reference isoform:P37025-1 .
?templateMotifSequenceProfileAlignmentOperationP3702572 edam:has_input signature:MF_01940 ;
rdf:type edam:operation_0300 .
?targetMotifMatch73 faldo:location ?targetMotifMatchRegionMatch74 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0194076 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37025MF_0194067 .
?targetMotifMatchRegionMatch74 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0194075 .
?targetMotifMatchRegionMatchBeginMF_0194075 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0194068 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0194076 edam:has_input signature:MF_01940 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37025MF_0194065, 1, (STRLEN(?templateMotifCigarP37025MF_0194065) - STRLEN(REPLACE(?templateMotifCigarP37025MF_0194065, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionP3702566) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37025MF_0194067, 1, (STRLEN(?targetMotifMatchCigarP37025MF_0194067) - STRLEN(REPLACE(?targetMotifMatchCigarP37025MF_0194067, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37025MF_0194067, 1, (STRLEN(?targetMotifMatchCigarP37025MF_0194067) - STRLEN(REPLACE(?targetMotifMatchCigarP37025MF_0194067, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) .
BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0194068) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01940a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch84 faldo:location ?templateMotifSequenceMatchRegionP3702585 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3702587 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37025MF_0194080 .
?templateMotifSequenceMatchRegionP3702585 faldo:begin ?templateMotifSequenceMatchBeginP3702586 .
?templateMotifSequenceMatchBeginP3702586 faldo:position ?templateMotifSequenceMatchBeginPositionP3702581 ;
faldo:reference isoform:P37025-1 .
?templateMotifSequenceProfileAlignmentOperationP3702587 edam:has_input signature:MF_01940 ;
rdf:type edam:operation_0300 .
?targetMotifMatch88 faldo:location ?targetMotifMatchRegionMatch89 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0194091 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37025MF_0194082 .
?targetMotifMatchRegionMatch89 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0194090 .
?targetMotifMatchRegionMatchBeginMF_0194090 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0194083 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0194091 edam:has_input signature:MF_01940 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37025MF_0194080, 1, (STRLEN(?templateMotifCigarP37025MF_0194080) - STRLEN(REPLACE(?templateMotifCigarP37025MF_0194080, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionP3702581) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37025MF_0194082, 1, (STRLEN(?targetMotifMatchCigarP37025MF_0194082) - STRLEN(REPLACE(?targetMotifMatchCigarP37025MF_0194082, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37025MF_0194082, 1, (STRLEN(?targetMotifMatchCigarP37025MF_0194082) - STRLEN(REPLACE(?targetMotifMatchCigarP37025MF_0194082, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0194083) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01940a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon95 {taxon:561 taxon:620}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon95 .
BIND(?this AS ?case5) .
}
}
"xsd:string |
