| http://purl.uniprot.org/unirules/MF_01955#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01955#construct-template-23 |
| http://purl.uniprot.org/unirules/MF_01955#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01955#construct-template-46 |
| http://purl.uniprot.org/unirules/MF_01955#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01955#construct-template-22 |
| http://purl.uniprot.org/unirules/MF_01955#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01955#construct-template-69 |
| http://purl.uniprot.org/unirules/MF_01955#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01955#construct-template-45 |
| http://purl.uniprot.org/unirules/MF_01955#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01955#construct-template-21 |
| http://purl.uniprot.org/unirules/MF_01955#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01955#construct-template-28 |
| http://purl.uniprot.org/unirules/MF_01955#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01955#construct-template-29 |
| http://purl.uniprot.org/unirules/MF_01955#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01955#construct-template-27 |
| http://purl.uniprot.org/unirules/MF_01955#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01955#construct-template-26 |
| http://purl.uniprot.org/unirules/MF_01955#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01955#construct-template-49 |
| http://purl.uniprot.org/unirules/MF_01955#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01955#construct-template-25 |
| http://purl.uniprot.org/unirules/MF_01955#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01955#construct-template-72 |
| http://purl.uniprot.org/unirules/MF_01955#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01955#construct-template-71 |
| http://purl.uniprot.org/unirules/MF_01955#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01955#construct-template-70 |
| http://purl.uniprot.org/unirules/MF_01955#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01955#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01955#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01955#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01955#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01955#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:684475 up:source unirule:MF_01955 .
_:684476 up:source unirule:MF_01955 .
_:684477 up:source unirule:MF_01955 .
_:684478 up:source unirule:MF_01955 .
_:684479 up:source unirule:MF_01955 .
_:684480 up:source unirule:MF_01955 .
_:684481 up:source unirule:MF_01955 .
_:684482 up:source unirule:MF_01955 .
_:684483 up:source unirule:MF_01955 .
_:684484 up:source unirule:MF_01955 .
_:684485 up:source unirule:MF_01955 .
_:684486 up:source unirule:MF_01955 .
_:684487 up:source unirule:MF_01955 .
_:684488 up:source unirule:MF_01955 .
_:684489 up:source unirule:MF_01955 .
_:684490 up:source unirule:MF_01955 .
?this up:annotation ?annotation0 ,
?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0005737 ,
GO:0009039 ,
GO:0043419 ,
keyword:378 ,
keyword:963 .
?annotation0 up:activity ?activity1 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity1 up:catalyticActivity ;
up:enzymeClass .
?annotation2 a up:Pathway_Annotation ;
rdfs:comment 'Nitrogen metabolism; urea degradation; CO(2) and NH(3) from urea (urease route): step 1/1.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'In the N-terminal section; belongs to the urease gamma subunit family.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'In the C-terminal section; belongs to the urease beta subunit family.' .
?case7 up:alternativeName ?name9 ;
up:recommendedName ?name8 .
?name8 up:ecName '3.5.1.5' ;
up:fullName 'Urease subunit alpha' ;
rdf:type up:Structured_Name .
?name9 up:fullName 'Urea amidohydrolase subunit alpha' ;
rdf:type up:Structured_Name .
?case10 up:alternativeName ?name12 ;
up:recommendedName ?name11 .
?name11 up:ecName '3.5.1.5' ;
up:fullName 'Urease subunit gamma/beta' ;
rdf:type up:Structured_Name .
?name12 up:fullName 'Urea amidohydrolase subunit gamma/beta' ;
rdf:type up:Structured_Name .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Urease gamma' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Urease beta' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
_:684491 a rdf:Statement ;
up:attribution _:684475 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:684492 a rdf:Statement ;
up:attribution _:684476 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:684493 a rdf:Statement ;
up:attribution _:684477 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:684494 a rdf:Statement ;
up:attribution _:684478 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:684495 a rdf:Statement ;
up:attribution _:684479 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:684496 a rdf:Statement ;
up:attribution _:684480 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:684497 a rdf:Statement ;
up:attribution _:684481 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:684498 a rdf:Statement ;
up:attribution _:684482 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009039 .
_:684499 a rdf:Statement ;
up:attribution _:684483 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0043419 .
_:684500 a rdf:Statement ;
up:attribution _:684484 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:684501 a rdf:Statement ;
up:attribution _:684485 ;
rdf:subject ?case7 ;
rdf:predicate up:recommendedName ;
rdf:object ?name8 .
_:684502 a rdf:Statement ;
up:attribution _:684486 ;
rdf:subject ?case7 ;
rdf:predicate up:alternativeName ;
rdf:object ?name9 .
_:684503 a rdf:Statement ;
up:attribution _:684487 ;
rdf:subject ?case10 ;
rdf:predicate up:recommendedName ;
rdf:object ?name11 .
_:684504 a rdf:Statement ;
up:attribution _:684488 ;
rdf:subject ?case10 ;
rdf:predicate up:alternativeName ;
rdf:object ?name12 .
_:684505 a rdf:Statement ;
up:source unirule:MF_01955 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:684506 a rdf:Statement ;
up:attribution _:684489 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:684507 a rdf:Statement ;
up:source unirule:MF_01955 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:684508 a rdf:Statement ;
up:attribution _:684490 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01955
#Rule MF_01955 Created by:? on:2006-04-10 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon25 {taxon:85011 taxon:118964 taxon:213849 taxon:135621 taxon:2281}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01955 .
?thisOrganism rdfs:subClassOf+ ?supertaxon25 .
BIND(URI(CONCAT(STR(?this), '#MF_01955a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_01955a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01955a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01955a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01955a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch30 faldo:location ?templateMotifSequenceMatchRegionP1491631 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1491633 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP14916MF_0195526 .
?templateMotifSequenceMatchRegionP1491631 faldo:begin ?templateMotifSequenceMatchBeginP1491632 .
?templateMotifSequenceMatchBeginP1491632 faldo:position ?templateMotifSequenceMatchBeginPositionP1491627 ;
faldo:reference isoform:P14916-1 .
?templateMotifSequenceProfileAlignmentOperationP1491633 edam:has_input signature:MF_01955 ;
rdf:type edam:operation_0300 .
?targetMotifMatch34 faldo:location ?targetMotifMatchRegionMatch35 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0195537 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP14916MF_0195528 .
?targetMotifMatchRegionMatch35 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0195536 .
?targetMotifMatchRegionMatchBeginMF_0195536 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0195529 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0195537 edam:has_input signature:MF_01955 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14916MF_0195526, 1, (STRLEN(?templateMotifCigarP14916MF_0195526) - STRLEN(REPLACE(?templateMotifCigarP14916MF_0195526, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP1491627) + 1)), '}'), '')))), '[a-z]', '')) AS ?step138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14916MF_0195528, 1, (STRLEN(?targetMotifMatchCigarP14916MF_0195528) - STRLEN(REPLACE(?targetMotifMatchCigarP14916MF_0195528, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14916MF_0195528, 1, (STRLEN(?targetMotifMatchCigarP14916MF_0195528) - STRLEN(REPLACE(?targetMotifMatchCigarP14916MF_0195528, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), '')))), '[^-]', ''))) AS ?step239) .
BIND(((?step239 + ?targetMotifMatchRegionMatchBeginPositionMF_0195529) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((BOUND(?thisPositionOn17) && BOUND(?thisPositionOn18))) .
BIND(URI(CONCAT(STR(?this), '#MF_01955a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionP1491646 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1491648 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP14916MF_0195541 .
?templateMotifSequenceMatchRegionP1491646 faldo:begin ?templateMotifSequenceMatchBeginP1491647 .
?templateMotifSequenceMatchBeginP1491647 faldo:position ?templateMotifSequenceMatchBeginPositionP1491642 ;
faldo:reference isoform:P14916-1 .
?templateMotifSequenceProfileAlignmentOperationP1491648 edam:has_input signature:MF_01955 ;
rdf:type edam:operation_0300 .
?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0195552 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP14916MF_0195543 .
?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0195551 .
?targetMotifMatchRegionMatchBeginMF_0195551 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0195544 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0195552 edam:has_input signature:MF_01955 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14916MF_0195541, 1, (STRLEN(?templateMotifCigarP14916MF_0195541) - STRLEN(REPLACE(?templateMotifCigarP14916MF_0195541, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionP1491642) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14916MF_0195543, 1, (STRLEN(?targetMotifMatchCigarP14916MF_0195543) - STRLEN(REPLACE(?targetMotifMatchCigarP14916MF_0195543, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14916MF_0195543, 1, (STRLEN(?targetMotifMatchCigarP14916MF_0195543) - STRLEN(REPLACE(?targetMotifMatchCigarP14916MF_0195543, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0195544) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((BOUND(?thisPositionOn23) && BOUND(?thisPositionOn24))) .
BIND(URI(CONCAT(STR(?this), '#MF_01955a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:213849 .
BIND(?this AS ?case7) .
BIND(URI(CONCAT(STR(?this), '#MF_01955a8')) AS ?name8) .
BIND(URI(CONCAT(STR(?this), '#MF_01955a9')) AS ?name9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:213849 .
})) .
BIND(?this AS ?case10) .
BIND(URI(CONCAT(STR(?this), '#MF_01955a11')) AS ?name11) .
BIND(URI(CONCAT(STR(?this), '#MF_01955a12')) AS ?name12) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_01955 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01955#construct |
