| http://purl.uniprot.org/unirules/MF_02056#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:726686 up:source unirule:MF_02056 .
_:726687 up:source unirule:MF_02056 .
_:726688 up:source unirule:MF_02056 .
_:726689 up:source unirule:MF_02056 .
_:726690 up:source unirule:MF_02056 .
_:726691 up:source unirule:MF_02056 .
_:726692 up:source unirule:MF_02056 .
_:726693 up:source unirule:MF_02056 .
_:726694 up:source unirule:MF_02056 .
_:726695 up:source unirule:MF_02056 .
_:726696 up:source unirule:MF_02056 .
_:726697 up:source unirule:MF_02056 .
_:726698 up:source unirule:MF_02056 .
_:726699 up:source unirule:MF_02056 .
_:726700 up:source unirule:MF_02056 .
_:726701 up:source unirule:MF_02056 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0016765 ,
GO:0030170 ,
GO:0071266 ,
keyword:28 ,
keyword:486 ,
keyword:663 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.5.1.-' ;
up:fullName 'O-succinylhomoserine sulfhydrylase' ;
up:shortName 'OSH sulfhydrylase' ,
'OSHS sulfhydrylase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'metZ' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the formation of L-homocysteine from O-succinyl-L-homoserine (OSHS) and hydrogen sulfide.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity .
?annotation5 up:cofactor chebi:597326 ;
rdf:type up:Cofactor_Annotation .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-homocysteine from O-succinyl-L-homoserine: step 1/1.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the trans-sulfuration enzymes family. MetZ subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-(pyridoxal phosphate)lysine' .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
_:726702 a rdf:Statement ;
up:attribution _:726686 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:726703 a rdf:Statement ;
up:attribution _:726687 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:726704 a rdf:Statement ;
up:attribution _:726688 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:726705 a rdf:Statement ;
up:attribution _:726689 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:726706 a rdf:Statement ;
up:attribution _:726690 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:726707 a rdf:Statement ;
up:attribution _:726691 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:726708 a rdf:Statement ;
up:attribution _:726692 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:726709 a rdf:Statement ;
up:attribution _:726693 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:726710 a rdf:Statement ;
up:attribution _:726694 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:726711 a rdf:Statement ;
up:attribution _:726695 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:486 .
_:726712 a rdf:Statement ;
up:attribution _:726696 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:663 .
_:726713 a rdf:Statement ;
up:attribution _:726697 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:726714 a rdf:Statement ;
up:attribution _:726698 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030170 .
_:726715 a rdf:Statement ;
up:attribution _:726699 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016765 .
_:726716 a rdf:Statement ;
up:attribution _:726700 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0071266 .
_:726717 a rdf:Statement ;
up:source unirule:MF_02056 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:726718 a rdf:Statement ;
up:attribution _:726701 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02056
#Rule MF_02056 Created by:? on:2016-02-15 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02056 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_02056a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02056a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02056a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02056a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02056a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02056a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02056a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch19 faldo:location ?templateMotifSequenceMatchRegionP9WGB520 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WGB522 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WGB5MF_0205615 .
?templateMotifSequenceMatchRegionP9WGB520 faldo:begin ?templateMotifSequenceMatchBeginP9WGB521 .
?templateMotifSequenceMatchBeginP9WGB521 faldo:position ?templateMotifSequenceMatchBeginPositionP9WGB516 ;
faldo:reference isoform:P9WGB5-1 .
?templateMotifSequenceProfileAlignmentOperationP9WGB522 edam:has_input signature:MF_02056 ;
rdf:type edam:operation_0300 .
?targetMotifMatch23 faldo:location ?targetMotifMatchRegionMatch24 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0205626 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WGB5MF_0205617 .
?targetMotifMatchRegionMatch24 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0205625 .
?targetMotifMatchRegionMatchBeginMF_0205625 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0205618 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0205626 edam:has_input signature:MF_02056 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WGB5MF_0205615, 1, (STRLEN(?templateMotifCigarP9WGB5MF_0205615) - STRLEN(REPLACE(?templateMotifCigarP9WGB5MF_0205615, CONCAT('^(?:-*[^-]){', STR(((219 - ?templateMotifSequenceMatchBeginPositionP9WGB516) + 1)), '}'), '')))), '[a-z]', '')) AS ?step127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WGB5MF_0205617, 1, (STRLEN(?targetMotifMatchCigarP9WGB5MF_0205617) - STRLEN(REPLACE(?targetMotifMatchCigarP9WGB5MF_0205617, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WGB5MF_0205617, 1, (STRLEN(?targetMotifMatchCigarP9WGB5MF_0205617) - STRLEN(REPLACE(?targetMotifMatchCigarP9WGB5MF_0205617, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), '')))), '[^-]', ''))) AS ?step228) .
BIND(((?step228 + ?targetMotifMatchRegionMatchBeginPositionMF_0205618) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02056a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
}
"xsd:string |
