| http://purl.uniprot.org/unirules/MF_02064#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:729689 up:source unirule:MF_02064 .
_:729690 up:source unirule:MF_02064 .
_:729691 up:source unirule:MF_02064 .
_:729692 up:source unirule:MF_02064 .
_:729693 up:source unirule:MF_02064 .
_:729694 up:source unirule:MF_02064 .
_:729695 up:source unirule:MF_02064 .
_:729696 up:source unirule:MF_02064 .
_:729697 up:source unirule:MF_02064 .
_:729698 up:source unirule:MF_02064 .
_:729699 up:source unirule:MF_02064 .
_:729700 up:source unirule:MF_02064 .
_:729701 up:source unirule:MF_02064 .
_:729702 up:source unirule:MF_02064 .
_:729703 up:source unirule:MF_02064 .
_:729704 up:source unirule:MF_02064 .
_:729705 up:source unirule:MF_02064 .
_:729706 up:source unirule:MF_02064 .
_:729707 up:source unirule:MF_02064 .
_:729708 up:source unirule:MF_02064 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0003677 ,
GO:0005737 ,
GO:0006352 ,
GO:0010468 ,
GO:0016987 ,
keyword:238 ,
keyword:346 ,
keyword:731 ,
keyword:804 ,
keyword:805 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'RNA polymerase sigma factor SigI' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'sigI' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.' .
?annotation3 a up:Activity_Regulation_Annotation ;
rdfs:comment 'Negatively regulated by the anti-sigma-I factor RsgI.' .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Interacts with RsgI.' .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the sigma-70 factor family. SigI subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Nucleotide_Binding_Annotation ;
rdfs:comment 'H-T-H motif' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Polymerase core binding' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
_:729709 a rdf:Statement ;
up:attribution _:729689 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:729710 a rdf:Statement ;
up:attribution _:729690 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:729711 a rdf:Statement ;
up:attribution _:729691 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:729712 a rdf:Statement ;
up:attribution _:729692 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:729713 a rdf:Statement ;
up:attribution _:729693 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:729714 a rdf:Statement ;
up:attribution _:729694 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:729715 a rdf:Statement ;
up:attribution _:729695 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:729716 a rdf:Statement ;
up:attribution _:729696 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:729717 a rdf:Statement ;
up:attribution _:729697 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:729718 a rdf:Statement ;
up:attribution _:729698 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:731 .
_:729719 a rdf:Statement ;
up:attribution _:729699 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:346 .
_:729720 a rdf:Statement ;
up:attribution _:729700 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:804 .
_:729721 a rdf:Statement ;
up:attribution _:729701 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:805 .
_:729722 a rdf:Statement ;
up:attribution _:729702 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:729723 a rdf:Statement ;
up:attribution _:729703 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016987 .
_:729724 a rdf:Statement ;
up:attribution _:729704 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0010468 .
_:729725 a rdf:Statement ;
up:attribution _:729705 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006352 .
_:729726 a rdf:Statement ;
up:attribution _:729706 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:729727 a rdf:Statement ;
up:source unirule:MF_02064 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:729728 a rdf:Statement ;
up:attribution _:729707 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:729729 a rdf:Statement ;
up:source unirule:MF_02064 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:729730 a rdf:Statement ;
up:attribution _:729708 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02064
#Rule MF_02064 Created by:? on:2016-04-25 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02064 .
?thisOrganism rdfs:subClassOf+ taxon:1239 .
BIND(URI(CONCAT(STR(?this), '#MF_02064a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02064a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02064a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02064a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02064a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02064a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch24 faldo:location ?templateMotifSequenceMatchRegionO3165425 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO3165427 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO31654MF_0206420 .
?templateMotifSequenceMatchRegionO3165425 faldo:begin ?templateMotifSequenceMatchBeginO3165426 .
?templateMotifSequenceMatchBeginO3165426 faldo:position ?templateMotifSequenceMatchBeginPositionO3165421 ;
faldo:reference isoform:O31654-1 .
?templateMotifSequenceProfileAlignmentOperationO3165427 edam:has_input signature:MF_02064 ;
rdf:type edam:operation_0300 .
?targetMotifMatch28 faldo:location ?targetMotifMatchRegionMatch29 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0206431 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO31654MF_0206422 .
?targetMotifMatchRegionMatch29 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0206430 .
?targetMotifMatchRegionMatchBeginMF_0206430 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0206423 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0206431 edam:has_input signature:MF_02064 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO31654MF_0206420, 1, (STRLEN(?templateMotifCigarO31654MF_0206420) - STRLEN(REPLACE(?templateMotifCigarO31654MF_0206420, CONCAT('^(?:-*[^-]){', STR(((206 - ?templateMotifSequenceMatchBeginPositionO3165421) + 1)), '}'), '')))), '[a-z]', '')) AS ?step132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO31654MF_0206422, 1, (STRLEN(?targetMotifMatchCigarO31654MF_0206422) - STRLEN(REPLACE(?targetMotifMatchCigarO31654MF_0206422, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO31654MF_0206422, 1, (STRLEN(?targetMotifMatchCigarO31654MF_0206422) - STRLEN(REPLACE(?targetMotifMatchCigarO31654MF_0206422, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), '')))), '[^-]', ''))) AS ?step233) .
BIND(((?step233 + ?targetMotifMatchRegionMatchBeginPositionMF_0206423) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO31654MF_0206420, 1, (STRLEN(?templateMotifCigarO31654MF_0206420) - STRLEN(REPLACE(?templateMotifCigarO31654MF_0206420, CONCAT('^(?:-*[^-]){', STR(((225 - ?templateMotifSequenceMatchBeginPositionO3165421) + 1)), '}'), '')))), '[a-z]', '')) AS ?step134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO31654MF_0206422, 1, (STRLEN(?targetMotifMatchCigarO31654MF_0206422) - STRLEN(REPLACE(?targetMotifMatchCigarO31654MF_0206422, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO31654MF_0206422, 1, (STRLEN(?targetMotifMatchCigarO31654MF_0206422) - STRLEN(REPLACE(?targetMotifMatchCigarO31654MF_0206422, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), '')))), '[^-]', ''))) AS ?step235) .
BIND(((?step235 + ?targetMotifMatchRegionMatchBeginPositionMF_0206423) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((BOUND(?thisPositionOn12) && BOUND(?thisPositionOn13))) .
BIND(URI(CONCAT(STR(?this), '#MF_02064a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch41 faldo:location ?templateMotifSequenceMatchRegionO3165442 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO3165444 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO31654MF_0206437 .
?templateMotifSequenceMatchRegionO3165442 faldo:begin ?templateMotifSequenceMatchBeginO3165443 .
?templateMotifSequenceMatchBeginO3165443 faldo:position ?templateMotifSequenceMatchBeginPositionO3165438 ;
faldo:reference isoform:O31654-1 .
?templateMotifSequenceProfileAlignmentOperationO3165444 edam:has_input signature:MF_02064 ;
rdf:type edam:operation_0300 .
?targetMotifMatch45 faldo:location ?targetMotifMatchRegionMatch46 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0206448 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO31654MF_0206439 .
?targetMotifMatchRegionMatch46 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0206447 .
?targetMotifMatchRegionMatchBeginMF_0206447 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0206440 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0206448 edam:has_input signature:MF_02064 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO31654MF_0206437, 1, (STRLEN(?templateMotifCigarO31654MF_0206437) - STRLEN(REPLACE(?templateMotifCigarO31654MF_0206437, CONCAT('^(?:-*[^-]){', STR(((61 - ?templateMotifSequenceMatchBeginPositionO3165438) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO31654MF_0206439, 1, (STRLEN(?targetMotifMatchCigarO31654MF_0206439) - STRLEN(REPLACE(?targetMotifMatchCigarO31654MF_0206439, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO31654MF_0206439, 1, (STRLEN(?targetMotifMatchCigarO31654MF_0206439) - STRLEN(REPLACE(?targetMotifMatchCigarO31654MF_0206439, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) .
BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0206440) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO31654MF_0206437, 1, (STRLEN(?templateMotifCigarO31654MF_0206437) - STRLEN(REPLACE(?templateMotifCigarO31654MF_0206437, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionO3165438) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO31654MF_0206439, 1, (STRLEN(?targetMotifMatchCigarO31654MF_0206439) - STRLEN(REPLACE(?targetMotifMatchCigarO31654MF_0206439, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO31654MF_0206439, 1, (STRLEN(?targetMotifMatchCigarO31654MF_0206439) - STRLEN(REPLACE(?targetMotifMatchCigarO31654MF_0206439, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0206440) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((BOUND(?thisPositionOn18) && BOUND(?thisPositionOn19))) .
BIND(URI(CONCAT(STR(?this), '#MF_02064a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
}
"xsd:string |
