| http://purl.uniprot.org/unirules/MF_02076#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:735192 up:source unirule:MF_02076 .
_:735193 up:source unirule:MF_02076 .
_:735194 up:source unirule:MF_02076 .
_:735195 up:source unirule:MF_02076 .
_:735196 up:source unirule:MF_02076 .
_:735197 up:source unirule:MF_02076 .
_:735198 up:source unirule:MF_02076 .
_:735199 up:source unirule:MF_02076 .
_:735200 up:source unirule:MF_02076 .
_:735201 up:source unirule:MF_02076 .
_:735202 up:source unirule:MF_02076 .
_:735203 up:source unirule:MF_02076 .
_:735204 up:source unirule:MF_02076 .
_:735205 up:source unirule:MF_02076 .
_:735206 up:source unirule:MF_02076 .
_:735207 up:source unirule:MF_02076 .
_:735208 up:source unirule:MF_02076 .
_:735209 up:source unirule:MF_02076 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0004818 ,
GO:0005524 ,
GO:0005737 ,
GO:0006424 ,
keyword:30 ,
keyword:436 ,
keyword:547 ,
keyword:648 ,
keyword:67 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.1.1.17' ;
up:fullName 'Glutamate--tRNA ligase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Glutamyl-tRNA synthetase' ;
up:shortName 'GluRS' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'gltX' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 2 subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Motif_Annotation ;
rdfs:comment "'HIGH' region" .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
_:735210 a rdf:Statement ;
up:attribution _:735192 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:735211 a rdf:Statement ;
up:attribution _:735193 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:735212 a rdf:Statement ;
up:attribution _:735194 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:735213 a rdf:Statement ;
up:attribution _:735195 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:735214 a rdf:Statement ;
up:attribution _:735196 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:735215 a rdf:Statement ;
up:attribution _:735197 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:735216 a rdf:Statement ;
up:attribution _:735198 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:735217 a rdf:Statement ;
up:attribution _:735199 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:30 .
_:735218 a rdf:Statement ;
up:attribution _:735200 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:735219 a rdf:Statement ;
up:attribution _:735201 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:735220 a rdf:Statement ;
up:attribution _:735202 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:735221 a rdf:Statement ;
up:attribution _:735203 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:735222 a rdf:Statement ;
up:attribution _:735204 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:735223 a rdf:Statement ;
up:attribution _:735205 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:735224 a rdf:Statement ;
up:attribution _:735206 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004818 .
_:735225 a rdf:Statement ;
up:attribution _:735207 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006424 .
_:735226 a rdf:Statement ;
up:attribution _:735208 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:735227 a rdf:Statement ;
up:source unirule:MF_02076 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:735228 a rdf:Statement ;
up:attribution _:735209 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02076
#Rule MF_02076 Created by:? on:2016-11-10 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02076 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_02076a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02076a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02076a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02076a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02076a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02076a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch19 faldo:location ?templateMotifSequenceMatchRegionQ5877220 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5877222 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58772MF_0207615 .
?templateMotifSequenceMatchRegionQ5877220 faldo:begin ?templateMotifSequenceMatchBeginQ5877221 .
?templateMotifSequenceMatchBeginQ5877221 faldo:position ?templateMotifSequenceMatchBeginPositionQ5877216 ;
faldo:reference isoform:Q58772-1 .
?templateMotifSequenceProfileAlignmentOperationQ5877222 edam:has_input signature:MF_02076 ;
rdf:type edam:operation_0300 .
?targetMotifMatch23 faldo:location ?targetMotifMatchRegionMatch24 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0207626 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58772MF_0207617 .
?targetMotifMatchRegionMatch24 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0207625 .
?targetMotifMatchRegionMatchBeginMF_0207625 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0207618 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0207626 edam:has_input signature:MF_02076 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58772MF_0207615, 1, (STRLEN(?templateMotifCigarQ58772MF_0207615) - STRLEN(REPLACE(?templateMotifCigarQ58772MF_0207615, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionQ5877216) + 1)), '}'), '')))), '[a-z]', '')) AS ?step127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58772MF_0207617, 1, (STRLEN(?targetMotifMatchCigarQ58772MF_0207617) - STRLEN(REPLACE(?targetMotifMatchCigarQ58772MF_0207617, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58772MF_0207617, 1, (STRLEN(?targetMotifMatchCigarQ58772MF_0207617) - STRLEN(REPLACE(?targetMotifMatchCigarQ58772MF_0207617, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), '')))), '[^-]', ''))) AS ?step228) .
BIND(((?step228 + ?targetMotifMatchRegionMatchBeginPositionMF_0207618) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58772MF_0207615, 1, (STRLEN(?templateMotifCigarQ58772MF_0207615) - STRLEN(REPLACE(?templateMotifCigarQ58772MF_0207615, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionQ5877216) + 1)), '}'), '')))), '[a-z]', '')) AS ?step129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58772MF_0207617, 1, (STRLEN(?targetMotifMatchCigarQ58772MF_0207617) - STRLEN(REPLACE(?targetMotifMatchCigarQ58772MF_0207617, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58772MF_0207617, 1, (STRLEN(?targetMotifMatchCigarQ58772MF_0207617) - STRLEN(REPLACE(?targetMotifMatchCigarQ58772MF_0207617, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), '')))), '[^-]', ''))) AS ?step230) .
BIND(((?step230 + ?targetMotifMatchRegionMatchBeginPositionMF_0207618) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER (REGEX('P[SNE]P[ARNDCQEGHILKMFPSTWYVBZJUOX]{4)[HTS][LIVM]G[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02076a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
}
"xsd:string |
