| http://purl.uniprot.org/unirules/MF_02094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02094#construct-template-90 |
| http://purl.uniprot.org/unirules/MF_02094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02094#construct-template-65 |
| http://purl.uniprot.org/unirules/MF_02094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02094#construct-template-43 |
| http://purl.uniprot.org/unirules/MF_02094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02094#construct-template-86 |
| http://purl.uniprot.org/unirules/MF_02094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02094#construct-template-89 |
| http://purl.uniprot.org/unirules/MF_02094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02094#construct-template-73 |
| http://purl.uniprot.org/unirules/MF_02094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02094#construct-template-87 |
| http://purl.uniprot.org/unirules/MF_02094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02094#construct-template-34 |
| http://purl.uniprot.org/unirules/MF_02094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02094#construct-template-62 |
| http://purl.uniprot.org/unirules/MF_02094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02094#construct-template-85 |
| http://purl.uniprot.org/unirules/MF_02094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02094#construct-template-12 |
| http://purl.uniprot.org/unirules/MF_02094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02094#construct-template-84 |
| http://purl.uniprot.org/unirules/MF_02094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02094#construct-template-56 |
| http://purl.uniprot.org/unirules/MF_02094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02094#construct-template-82 |
| http://purl.uniprot.org/unirules/MF_02094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02094#construct-template-91 |
| http://purl.uniprot.org/unirules/MF_02094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02094#construct-template-10 |
| http://purl.uniprot.org/unirules/MF_02094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02094#construct-template-78 |
| http://purl.uniprot.org/unirules/MF_02094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02094#construct-template-76 |
| http://purl.uniprot.org/unirules/MF_02094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02094#construct-template-74 |
| http://purl.uniprot.org/unirules/MF_02094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02094#construct-template-72 |
| http://purl.uniprot.org/unirules/MF_02094#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_02094#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_02094#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_02094#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_02094#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_02094#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:743434 up:source unirule:MF_02094 .
_:743435 up:source unirule:MF_02094 .
_:743436 up:source unirule:MF_02094 .
_:743437 up:source unirule:MF_02094 .
_:743438 up:source unirule:MF_02094 .
_:743439 up:source unirule:MF_02094 .
_:743440 up:source unirule:MF_02094 .
_:743441 up:source unirule:MF_02094 .
_:743442 up:source unirule:MF_02094 .
_:743443 up:source unirule:MF_02094 .
_:743444 up:source unirule:MF_02094 .
_:743445 up:source unirule:MF_02094 .
_:743446 up:source unirule:MF_02094 .
_:743447 up:source unirule:MF_02094 .
_:743448 up:source unirule:MF_02094 .
_:743449 up:source unirule:MF_02094 .
_:743450 up:source unirule:MF_02094 .
_:743451 up:source unirule:MF_02094 .
_:743452 up:source unirule:MF_02094 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0004456 ,
GO:0009255 ,
GO:0051539 ,
keyword:119 ,
keyword:311 ,
keyword:408 ,
keyword:411 ,
keyword:456 ,
keyword:479 ,
keyword:4 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.2.1.12' ;
up:fullName 'Phosphogluconate dehydratase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'edd' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the dehydration of 6-phospho-D-gluconate to 2-dehydro-3-deoxy-6-phospho-D-gluconate.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:49883 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 [4Fe-4S] cluster' .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate metabolism; Entner-Doudoroff pathway.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the IlvD/Edd family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:49883 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:49883 .
_:743453 a rdf:Statement ;
up:attribution _:743434 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:743454 a rdf:Statement ;
up:attribution _:743435 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:743455 a rdf:Statement ;
up:attribution _:743436 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:743456 a rdf:Statement ;
up:attribution _:743437 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:743457 a rdf:Statement ;
up:attribution _:743438 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:743458 a rdf:Statement ;
up:attribution _:743439 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:743459 a rdf:Statement ;
up:attribution _:743440 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:743460 a rdf:Statement ;
up:attribution _:743441 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:743461 a rdf:Statement ;
up:attribution _:743442 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:119 .
_:743462 a rdf:Statement ;
up:attribution _:743443 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:311 .
_:743463 a rdf:Statement ;
up:attribution _:743444 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:743464 a rdf:Statement ;
up:attribution _:743445 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:743465 a rdf:Statement ;
up:attribution _:743446 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:743466 a rdf:Statement ;
up:attribution _:743447 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:743467 a rdf:Statement ;
up:attribution _:743448 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004456 .
_:743468 a rdf:Statement ;
up:attribution _:743449 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051539 .
_:743469 a rdf:Statement ;
up:attribution _:743450 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009255 .
_:743470 a rdf:Statement ;
up:source unirule:MF_02094 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:743471 a rdf:Statement ;
up:attribution _:743451 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:743472 a rdf:Statement ;
up:source unirule:MF_02094 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:743473 a rdf:Statement ;
up:attribution _:743452 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02094
#Rule MF_02094 Created by:? on:2017-10-10 Modified by:ipedruzz on:2025-02-06
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02094 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_02094a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02094a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02094a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02094a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02094a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02094a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch26 faldo:location ?templateMotifSequenceMatchRegionP0ADF627 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ADF629 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ADF6MF_0209422 .
?templateMotifSequenceMatchRegionP0ADF627 faldo:begin ?templateMotifSequenceMatchBeginP0ADF628 .
?templateMotifSequenceMatchBeginP0ADF628 faldo:position ?templateMotifSequenceMatchBeginPositionP0ADF623 ;
faldo:reference isoform:P0ADF6-1 .
?templateMotifSequenceProfileAlignmentOperationP0ADF629 edam:has_input signature:MF_02094 ;
rdf:type edam:operation_0300 .
?targetMotifMatch30 faldo:location ?targetMotifMatchRegionMatch31 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0209433 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ADF6MF_0209424 .
?targetMotifMatchRegionMatch31 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0209432 .
?targetMotifMatchRegionMatchBeginMF_0209432 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0209425 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0209433 edam:has_input signature:MF_02094 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ADF6MF_0209422, 1, (STRLEN(?templateMotifCigarP0ADF6MF_0209422) - STRLEN(REPLACE(?templateMotifCigarP0ADF6MF_0209422, CONCAT('^(?:-*[^-]){', STR(((154 - ?templateMotifSequenceMatchBeginPositionP0ADF623) + 1)), '}'), '')))), '[a-z]', '')) AS ?step134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ADF6MF_0209424, 1, (STRLEN(?targetMotifMatchCigarP0ADF6MF_0209424) - STRLEN(REPLACE(?targetMotifMatchCigarP0ADF6MF_0209424, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ADF6MF_0209424, 1, (STRLEN(?targetMotifMatchCigarP0ADF6MF_0209424) - STRLEN(REPLACE(?targetMotifMatchCigarP0ADF6MF_0209424, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), '')))), '[^-]', ''))) AS ?step235) .
BIND(((?step235 + ?targetMotifMatchRegionMatchBeginPositionMF_0209425) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_02094a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch41 faldo:location ?templateMotifSequenceMatchRegionP0ADF642 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ADF644 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ADF6MF_0209437 .
?templateMotifSequenceMatchRegionP0ADF642 faldo:begin ?templateMotifSequenceMatchBeginP0ADF643 .
?templateMotifSequenceMatchBeginP0ADF643 faldo:position ?templateMotifSequenceMatchBeginPositionP0ADF638 ;
faldo:reference isoform:P0ADF6-1 .
?templateMotifSequenceProfileAlignmentOperationP0ADF644 edam:has_input signature:MF_02094 ;
rdf:type edam:operation_0300 .
?targetMotifMatch45 faldo:location ?targetMotifMatchRegionMatch46 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0209448 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ADF6MF_0209439 .
?targetMotifMatchRegionMatch46 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0209447 .
?targetMotifMatchRegionMatchBeginMF_0209447 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0209440 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0209448 edam:has_input signature:MF_02094 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ADF6MF_0209437, 1, (STRLEN(?templateMotifCigarP0ADF6MF_0209437) - STRLEN(REPLACE(?templateMotifCigarP0ADF6MF_0209437, CONCAT('^(?:-*[^-]){', STR(((221 - ?templateMotifSequenceMatchBeginPositionP0ADF638) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ADF6MF_0209439, 1, (STRLEN(?targetMotifMatchCigarP0ADF6MF_0209439) - STRLEN(REPLACE(?targetMotifMatchCigarP0ADF6MF_0209439, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ADF6MF_0209439, 1, (STRLEN(?targetMotifMatchCigarP0ADF6MF_0209439) - STRLEN(REPLACE(?targetMotifMatchCigarP0ADF6MF_0209439, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) .
BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0209440) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_02094a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_02094 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_02094#construct |
