| http://purl.uniprot.org/unirules/MF_02109#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:748043 up:source unirule:MF_02109 .
_:748044 up:source unirule:MF_02109 .
_:748045 up:source unirule:MF_02109 .
_:748046 up:source unirule:MF_02109 .
_:748047 up:source unirule:MF_02109 .
_:748048 up:source unirule:MF_02109 .
_:748049 up:source unirule:MF_02109 .
_:748050 up:source unirule:MF_02109 .
_:748051 up:source unirule:MF_02109 .
_:748052 up:source unirule:MF_02109 .
_:748053 up:source unirule:MF_02109 .
_:748054 up:source unirule:MF_02109 .
_:748055 up:source unirule:MF_02109 .
_:748056 up:source unirule:MF_02109 .
_:748057 up:source unirule:MF_02109 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0030170 ,
GO:0044686 ,
keyword:663 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.5.1.76' ;
up:fullName 'Cysteate synthase' ;
up:shortName 'CS' ,
'Cya synthase' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Specifically catalyzes the beta-elimination of phosphate from L-phosphoserine and the beta-addition of sulfite to the dehydroalanine intermediate to produce L-cysteate.' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 up:cofactor chebi:597326 ;
rdf:type up:Cofactor_Annotation .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Homotrimer.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the threonine synthase family. Cysteate synthase subfamily.' .
?case7 up:classifiedWith GO:0019295 ,
keyword:174 .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-(pyridoxal phosphate)lysine' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:597326 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:597326 .
_:748058 a rdf:Statement ;
up:attribution _:748043 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:748059 a rdf:Statement ;
up:attribution _:748044 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:748060 a rdf:Statement ;
up:attribution _:748045 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:748061 a rdf:Statement ;
up:attribution _:748046 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:748062 a rdf:Statement ;
up:attribution _:748047 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:748063 a rdf:Statement ;
up:attribution _:748048 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:748064 a rdf:Statement ;
up:attribution _:748049 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:663 .
_:748065 a rdf:Statement ;
up:attribution _:748050 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:748066 a rdf:Statement ;
up:attribution _:748051 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044686 .
_:748067 a rdf:Statement ;
up:attribution _:748052 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030170 .
_:748068 a rdf:Statement ;
up:attribution _:748053 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:174 .
_:748069 a rdf:Statement ;
up:attribution _:748054 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019295 .
_:748070 a rdf:Statement ;
up:source unirule:MF_02109 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:748071 a rdf:Statement ;
up:attribution _:748055 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:748072 a rdf:Statement ;
up:source unirule:MF_02109 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:748073 a rdf:Statement ;
up:attribution _:748056 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:748074 a rdf:Statement ;
up:source unirule:MF_02109 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:748075 a rdf:Statement ;
up:attribution _:748057 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02109
#Rule MF_02109 Created by:? on:2010-02-23 Modified by:Catherine Rivoire on:2024-10-08
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02109 .
?thisOrganism rdfs:subClassOf+ taxon:3366610 .
BIND(URI(CONCAT(STR(?this), '#MF_02109a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02109a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_02109a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02109a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02109a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02109a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch32 faldo:location ?templateMotifSequenceMatchRegionQ8TKU733 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8TKU735 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8TKU7MF_0210928 .
?templateMotifSequenceMatchRegionQ8TKU733 faldo:begin ?templateMotifSequenceMatchBeginQ8TKU734 .
?templateMotifSequenceMatchBeginQ8TKU734 faldo:position ?templateMotifSequenceMatchBeginPositionQ8TKU729 ;
faldo:reference isoform:Q8TKU7-1 .
?templateMotifSequenceProfileAlignmentOperationQ8TKU735 edam:has_input signature:MF_02109 ;
rdf:type edam:operation_0300 .
?targetMotifMatch36 faldo:location ?targetMotifMatchRegionMatch37 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0210939 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8TKU7MF_0210930 .
?targetMotifMatchRegionMatch37 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0210938 .
?targetMotifMatchRegionMatchBeginMF_0210938 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0210931 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0210939 edam:has_input signature:MF_02109 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8TKU7MF_0210928, 1, (STRLEN(?templateMotifCigarQ8TKU7MF_0210928) - STRLEN(REPLACE(?templateMotifCigarQ8TKU7MF_0210928, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionQ8TKU729) + 1)), '}'), '')))), '[a-z]', '')) AS ?step140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8TKU7MF_0210930, 1, (STRLEN(?targetMotifMatchCigarQ8TKU7MF_0210930) - STRLEN(REPLACE(?targetMotifMatchCigarQ8TKU7MF_0210930, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8TKU7MF_0210930, 1, (STRLEN(?targetMotifMatchCigarQ8TKU7MF_0210930) - STRLEN(REPLACE(?targetMotifMatchCigarQ8TKU7MF_0210930, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step140), '}'), '')))), '[^-]', ''))) AS ?step241) .
BIND(((?step241 + ?targetMotifMatchRegionMatchBeginPositionMF_0210931) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02109a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch47 faldo:location ?templateMotifSequenceMatchRegionQ8TKU748 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8TKU750 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8TKU7MF_0210943 .
?templateMotifSequenceMatchRegionQ8TKU748 faldo:begin ?templateMotifSequenceMatchBeginQ8TKU749 .
?templateMotifSequenceMatchBeginQ8TKU749 faldo:position ?templateMotifSequenceMatchBeginPositionQ8TKU744 ;
faldo:reference isoform:Q8TKU7-1 .
?templateMotifSequenceProfileAlignmentOperationQ8TKU750 edam:has_input signature:MF_02109 ;
rdf:type edam:operation_0300 .
?targetMotifMatch51 faldo:location ?targetMotifMatchRegionMatch52 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0210954 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8TKU7MF_0210945 .
?targetMotifMatchRegionMatch52 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0210953 .
?targetMotifMatchRegionMatchBeginMF_0210953 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0210946 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0210954 edam:has_input signature:MF_02109 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8TKU7MF_0210943, 1, (STRLEN(?templateMotifCigarQ8TKU7MF_0210943) - STRLEN(REPLACE(?templateMotifCigarQ8TKU7MF_0210943, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionQ8TKU744) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8TKU7MF_0210945, 1, (STRLEN(?targetMotifMatchCigarQ8TKU7MF_0210945) - STRLEN(REPLACE(?targetMotifMatchCigarQ8TKU7MF_0210945, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8TKU7MF_0210945, 1, (STRLEN(?targetMotifMatchCigarQ8TKU7MF_0210945) - STRLEN(REPLACE(?targetMotifMatchCigarQ8TKU7MF_0210945, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) .
BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0210946) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_02109a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch62 faldo:location ?templateMotifSequenceMatchRegionQ12W1563 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ12W1565 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ12W15MF_0210958 .
?templateMotifSequenceMatchRegionQ12W1563 faldo:begin ?templateMotifSequenceMatchBeginQ12W1564 .
?templateMotifSequenceMatchBeginQ12W1564 faldo:position ?templateMotifSequenceMatchBeginPositionQ12W1559 ;
faldo:reference isoform:Q12W15-1 .
?templateMotifSequenceProfileAlignmentOperationQ12W1565 edam:has_input signature:MF_02109 ;
rdf:type edam:operation_0300 .
?targetMotifMatch66 faldo:location ?targetMotifMatchRegionMatch67 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0210969 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ12W15MF_0210960 .
?targetMotifMatchRegionMatch67 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0210968 .
?targetMotifMatchRegionMatchBeginMF_0210968 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0210961 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0210969 edam:has_input signature:MF_02109 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ12W15MF_0210958, 1, (STRLEN(?templateMotifCigarQ12W15MF_0210958) - STRLEN(REPLACE(?templateMotifCigarQ12W15MF_0210958, CONCAT('^(?:-*[^-]){', STR(((371 - ?templateMotifSequenceMatchBeginPositionQ12W1559) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ12W15MF_0210960, 1, (STRLEN(?targetMotifMatchCigarQ12W15MF_0210960) - STRLEN(REPLACE(?targetMotifMatchCigarQ12W15MF_0210960, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ12W15MF_0210960, 1, (STRLEN(?targetMotifMatchCigarQ12W15MF_0210960) - STRLEN(REPLACE(?targetMotifMatchCigarQ12W15MF_0210960, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0210961) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs2t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_02109a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon73 {taxon:183925 taxon:183939 taxon:224756 taxon:183988}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon73 .
BIND(?this AS ?case7) .
}
}
"xsd:string |
