| http://purl.uniprot.org/unirules/MF_02118#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:751441 up:source unirule:MF_02118 .
_:751442 up:source unirule:MF_02118 .
_:751443 up:source unirule:MF_02118 .
_:751444 up:source unirule:MF_02118 .
_:751445 up:source unirule:MF_02118 .
_:751446 up:source unirule:MF_02118 .
_:751447 up:source unirule:MF_02118 .
_:751448 up:source unirule:MF_02118 .
_:751449 up:source unirule:MF_02118 .
_:751450 up:source unirule:MF_02118 .
_:751451 up:source unirule:MF_02118 .
_:751452 up:source unirule:MF_02118 .
_:751453 up:source unirule:MF_02118 .
_:751454 up:source unirule:MF_02118 .
_:751455 up:source unirule:MF_02118 .
_:751456 up:source unirule:MF_02118 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0009107 ,
GO:0009249 ,
GO:0033819 ,
keyword:12 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.3.1.181' ;
up:fullName 'Octanoyltransferase LipM' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Octanoyl-[acyl-carrier-protein]:[GcvH] N-octanoyltransferase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'lipM' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domain of GcvH, an intermediate carrier during protein lipoylation.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Protein modification; protein lipoylation via endogenous pathway; protein N(6)-(lipoyl)lysine from octanoyl-[acyl-carrier-protein].' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation8 a up:Annotation ;
rdfs:comment 'In the reaction, the free carboxyl group of octanoic acid is attached via an amide linkage to the epsilon-amino group of a specific lysine residue of lipoyl domains of lipoate-dependent enzymes. The reaction proceeds via an octanoyl-thioester enzyme intermediate.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the octanoyltransferase LipM family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Acyl-thioester intermediate' .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Lowers pKa of active site Cys' .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
_:751457 a rdf:Statement ;
up:attribution _:751441 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:751458 a rdf:Statement ;
up:attribution _:751442 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:751459 a rdf:Statement ;
up:attribution _:751443 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:751460 a rdf:Statement ;
up:attribution _:751444 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:751461 a rdf:Statement ;
up:attribution _:751445 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:751462 a rdf:Statement ;
up:attribution _:751446 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:751463 a rdf:Statement ;
up:attribution _:751447 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:751464 a rdf:Statement ;
up:attribution _:751448 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:751465 a rdf:Statement ;
up:attribution _:751449 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:751466 a rdf:Statement ;
up:attribution _:751450 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:12 .
_:751467 a rdf:Statement ;
up:attribution _:751451 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:751468 a rdf:Statement ;
up:attribution _:751452 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0033819 .
_:751469 a rdf:Statement ;
up:attribution _:751453 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009107 .
_:751470 a rdf:Statement ;
up:attribution _:751454 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009249 .
_:751471 a rdf:Statement ;
up:source unirule:MF_02118 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:751472 a rdf:Statement ;
up:attribution _:751455 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:751473 a rdf:Statement ;
up:source unirule:MF_02118 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:751474 a rdf:Statement ;
up:attribution _:751456 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02118
#Rule MF_02118 Created by:? on:2011-05-23 Modified by:Catherine Rivoire on:2024-11-05
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02118 .
?thisOrganism rdfs:subClassOf+ taxon:1239 .
BIND(URI(CONCAT(STR(?this), '#MF_02118a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02118a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02118a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02118a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02118a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02118a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02118a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_02118a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch26 faldo:location ?templateMotifSequenceMatchRegionP5451127 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5451129 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP54511MF_0211822 .
?templateMotifSequenceMatchRegionP5451127 faldo:begin ?templateMotifSequenceMatchBeginP5451128 .
?templateMotifSequenceMatchBeginP5451128 faldo:position ?templateMotifSequenceMatchBeginPositionP5451123 ;
faldo:reference isoform:P54511-1 .
?templateMotifSequenceProfileAlignmentOperationP5451129 edam:has_input signature:MF_02118 ;
rdf:type edam:operation_0300 .
?targetMotifMatch30 faldo:location ?targetMotifMatchRegionMatch31 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0211833 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP54511MF_0211824 .
?targetMotifMatchRegionMatch31 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0211832 .
?targetMotifMatchRegionMatchBeginMF_0211832 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0211825 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0211833 edam:has_input signature:MF_02118 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54511MF_0211822, 1, (STRLEN(?templateMotifCigarP54511MF_0211822) - STRLEN(REPLACE(?templateMotifCigarP54511MF_0211822, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionP5451123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54511MF_0211824, 1, (STRLEN(?targetMotifMatchCigarP54511MF_0211824) - STRLEN(REPLACE(?targetMotifMatchCigarP54511MF_0211824, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54511MF_0211824, 1, (STRLEN(?targetMotifMatchCigarP54511MF_0211824) - STRLEN(REPLACE(?targetMotifMatchCigarP54511MF_0211824, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), '')))), '[^-]', ''))) AS ?step235) .
BIND(((?step235 + ?targetMotifMatchRegionMatchBeginPositionMF_0211825) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_02118a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch41 faldo:location ?templateMotifSequenceMatchRegionP5451142 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5451144 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP54511MF_0211837 .
?templateMotifSequenceMatchRegionP5451142 faldo:begin ?templateMotifSequenceMatchBeginP5451143 .
?templateMotifSequenceMatchBeginP5451143 faldo:position ?templateMotifSequenceMatchBeginPositionP5451138 ;
faldo:reference isoform:P54511-1 .
?templateMotifSequenceProfileAlignmentOperationP5451144 edam:has_input signature:MF_02118 ;
rdf:type edam:operation_0300 .
?targetMotifMatch45 faldo:location ?targetMotifMatchRegionMatch46 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0211848 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP54511MF_0211839 .
?targetMotifMatchRegionMatch46 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0211847 .
?targetMotifMatchRegionMatchBeginMF_0211847 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0211840 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0211848 edam:has_input signature:MF_02118 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54511MF_0211837, 1, (STRLEN(?templateMotifCigarP54511MF_0211837) - STRLEN(REPLACE(?templateMotifCigarP54511MF_0211837, CONCAT('^(?:-*[^-]){', STR(((165 - ?templateMotifSequenceMatchBeginPositionP5451138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54511MF_0211839, 1, (STRLEN(?targetMotifMatchCigarP54511MF_0211839) - STRLEN(REPLACE(?targetMotifMatchCigarP54511MF_0211839, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54511MF_0211839, 1, (STRLEN(?targetMotifMatchCigarP54511MF_0211839) - STRLEN(REPLACE(?targetMotifMatchCigarP54511MF_0211839, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) .
BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0211840) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02118a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
}
"xsd:string |
