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SubjectPredicateObject
http://purl.uniprot.org/unirules/MF_02119#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_02119#construct-template-71
http://purl.uniprot.org/unirules/MF_02119#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_02119#construct-template-63
http://purl.uniprot.org/unirules/MF_02119#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_02119#construct-template-65
http://purl.uniprot.org/unirules/MF_02119#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_02119#construct-template-67
http://purl.uniprot.org/unirules/MF_02119#constructhttp://www.w3.org/ns/shacl#prefixeshttp://purl.uniprot.org/unirules/
http://purl.uniprot.org/unirules/MF_02119#constructhttp://spinrdf.org/sp#wherehttp://purl.uniprot.org/unirules/MF_02119#construct-where-list-0
http://purl.uniprot.org/unirules/MF_02119#constructhttp://spinrdf.org/sp#templateshttp://purl.uniprot.org/unirules/MF_02119#construct-template-list-0
http://purl.uniprot.org/unirules/MF_02119#constructhttp://www.w3.org/ns/shacl#construct"CONSTRUCT { _:751766 up:source unirule:MF_02119 . _:751767 up:source unirule:MF_02119 . _:751768 up:source unirule:MF_02119 . _:751769 up:source unirule:MF_02119 . _:751770 up:source unirule:MF_02119 . _:751771 up:source unirule:MF_02119 . _:751772 up:source unirule:MF_02119 . _:751773 up:source unirule:MF_02119 . _:751774 up:source unirule:MF_02119 . _:751775 up:source unirule:MF_02119 . _:751776 up:source unirule:MF_02119 . _:751777 up:source unirule:MF_02119 . _:751778 up:source unirule:MF_02119 . _:751779 up:source unirule:MF_02119 . _:751780 up:source unirule:MF_02119 . ?this up:annotation ?annotation1 , ?annotation2 ; up:classifiedWith GO:0009249 , keyword:12 , keyword:808 . ?gene0 skos:prefLabel 'lipL' . ?annotation1 a up:Annotation ; rdfs:comment 'The reaction proceeds via a thioester-linked acyl-enzyme intermediate.' . ?annotation2 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the octanoyltransferase LipL family.' . ?case3 up:alternativeName ?name5 ; up:classifiedWith GO:0017118 ; up:recommendedName ?name4 . ?name4 up:ecName '2.3.1.200' ; up:fullName 'Lipoyl-[GcvH]:protein N-lipoyltransferase' ; rdf:type up:Structured_Name . ?name5 up:fullName 'Lipoyl-[GcvH]:E2 amidotransferase' ; rdf:type up:Structured_Name . ?case6 up:alternativeName ?name8 ; up:classifiedWith GO:0009107 , GO:0016747 ; up:recommendedName ?name7 . ?name7 up:ecName '2.3.1.204' ; up:fullName 'Octanoyl-[GcvH]:protein N-octanoyltransferase' ; rdf:type up:Structured_Name . ?name8 up:fullName 'Octanoyl-[GcvH]:E2 amidotransferase' ; rdf:type up:Structured_Name . ?pfs9 up:annotation ?annotation10 . ?annotation10 faldo:begin ?pfsb11 ; faldo:end ?pfse12 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Acyl-thioester intermediate' . ?pfsb11 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?pfse12 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?pfs15 up:annotation ?annotation16 . ?annotation16 faldo:begin ?pfsb17 ; faldo:end ?pfse18 ; rdf:type up:Site_Annotation ; rdfs:comment 'Lowers pKa of active site Cys' . ?pfsb17 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfse18 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . _:751781 a rdf:Statement ; up:attribution _:751766 ; rdf:subject ?gene0 ; rdf:predicate up:encodedBy ; rdf:object ?gene0 . _:751782 a rdf:Statement ; up:attribution _:751767 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:751783 a rdf:Statement ; up:attribution _:751768 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:751784 a rdf:Statement ; up:attribution _:751769 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:12 . _:751785 a rdf:Statement ; up:attribution _:751770 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:751786 a rdf:Statement ; up:attribution _:751771 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009249 . _:751787 a rdf:Statement ; up:attribution _:751772 ; rdf:subject ?case3 ; rdf:predicate up:recommendedName ; rdf:object ?name4 . _:751788 a rdf:Statement ; up:attribution _:751773 ; rdf:subject ?case3 ; rdf:predicate up:alternativeName ; rdf:object ?name5 . _:751789 a rdf:Statement ; up:attribution _:751774 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object GO:0017118 . _:751790 a rdf:Statement ; up:attribution _:751775 ; rdf:subject ?case6 ; rdf:predicate up:recommendedName ; rdf:object ?name7 . _:751791 a rdf:Statement ; up:attribution _:751776 ; rdf:subject ?case6 ; rdf:predicate up:alternativeName ; rdf:object ?name8 . _:751792 a rdf:Statement ; up:attribution _:751777 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object GO:0016747 . _:751793 a rdf:Statement ; up:attribution _:751778 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object GO:0009107 . _:751794 a rdf:Statement ; up:source unirule:MF_02119 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:751795 a rdf:Statement ; up:attribution _:751779 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:751796 a rdf:Statement ; up:source unirule:MF_02119 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:751797 a rdf:Statement ; up:attribution _:751780 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_02119 #Rule MF_02119 Created by:? on:2011-05-23 Modified by:Catherine Rivoire on:2024-11-05 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_02119 . ?thisOrganism rdfs:subClassOf+ taxon:1239 . BIND(URI(CONCAT(STR(?this), '#MF_02119a1')) AS ?annotation1) . BIND(URI(CONCAT(STR(?this), '#MF_02119a2')) AS ?annotation2) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch25 faldo:location ?templateMotifSequenceMatchRegionP3964826 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3964828 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39648MF_0211921 . ?templateMotifSequenceMatchRegionP3964826 faldo:begin ?templateMotifSequenceMatchBeginP3964827 . ?templateMotifSequenceMatchBeginP3964827 faldo:position ?templateMotifSequenceMatchBeginPositionP3964822 ; faldo:reference isoform:P39648-1 . ?templateMotifSequenceProfileAlignmentOperationP3964828 edam:has_input signature:MF_02119 ; rdf:type edam:operation_0300 . ?targetMotifMatch29 faldo:location ?targetMotifMatchRegionMatch30 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0211932 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39648MF_0211923 . ?targetMotifMatchRegionMatch30 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0211931 . ?targetMotifMatchRegionMatchBeginMF_0211931 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0211924 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0211932 edam:has_input signature:MF_02119 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39648MF_0211921, 1, (STRLEN(?templateMotifCigarP39648MF_0211921) - STRLEN(REPLACE(?templateMotifCigarP39648MF_0211921, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionP3964822) + 1)), '}'), '')))), '[a-z]', '')) AS ?step133) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39648MF_0211923, 1, (STRLEN(?targetMotifMatchCigarP39648MF_0211923) - STRLEN(REPLACE(?targetMotifMatchCigarP39648MF_0211923, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39648MF_0211923, 1, (STRLEN(?targetMotifMatchCigarP39648MF_0211923) - STRLEN(REPLACE(?targetMotifMatchCigarP39648MF_0211923, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step133), '}'), '')))), '[^-]', ''))) AS ?step234) . BIND(((?step234 + ?targetMotifMatchRegionMatchBeginPositionMF_0211924) - 1) AS ?thisPositionOn13) . BIND(?thisPositionOn13 AS ?thisPositionOn14) . BIND(?this AS ?pfs1t35) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_02119a10')) AS ?annotation10) . BIND(?this AS ?pfs9) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch40 faldo:location ?templateMotifSequenceMatchRegionP3964841 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3964843 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39648MF_0211936 . ?templateMotifSequenceMatchRegionP3964841 faldo:begin ?templateMotifSequenceMatchBeginP3964842 . ?templateMotifSequenceMatchBeginP3964842 faldo:position ?templateMotifSequenceMatchBeginPositionP3964837 ; faldo:reference isoform:P39648-1 . ?templateMotifSequenceProfileAlignmentOperationP3964843 edam:has_input signature:MF_02119 ; rdf:type edam:operation_0300 . ?targetMotifMatch44 faldo:location ?targetMotifMatchRegionMatch45 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0211947 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39648MF_0211938 . ?targetMotifMatchRegionMatch45 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0211946 . ?targetMotifMatchRegionMatchBeginMF_0211946 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0211939 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0211947 edam:has_input signature:MF_02119 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39648MF_0211936, 1, (STRLEN(?templateMotifCigarP39648MF_0211936) - STRLEN(REPLACE(?templateMotifCigarP39648MF_0211936, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionP3964837) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39648MF_0211938, 1, (STRLEN(?targetMotifMatchCigarP39648MF_0211938) - STRLEN(REPLACE(?targetMotifMatchCigarP39648MF_0211938, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39648MF_0211938, 1, (STRLEN(?targetMotifMatchCigarP39648MF_0211938) - STRLEN(REPLACE(?targetMotifMatchCigarP39648MF_0211938, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) . BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0211939) - 1) AS ?thisPositionOn19) . BIND(?thisPositionOn19 AS ?thisPositionOn20) . BIND(?this AS ?pfs1t50) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_02119a16')) AS ?annotation16) . BIND(?this AS ?pfs15) . } OPTIONAL { ?this a up:Protein . VALUES ?supertaxon51 {taxon:1637 taxon:1350} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon51 . BIND(?this AS ?case3) . BIND(URI(CONCAT(STR(?this), '#MF_02119a4')) AS ?name4) . BIND(URI(CONCAT(STR(?this), '#MF_02119a5')) AS ?name5) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon52 {taxon:1637 taxon:1350} ?thisOrganism rdfs:subClassOf+ ?supertaxon52 . })) . BIND(?this AS ?case6) . BIND(URI(CONCAT(STR(?this), '#MF_02119a7')) AS ?name7) . BIND(URI(CONCAT(STR(?this), '#MF_02119a8')) AS ?name8) . } } "xsd:string
http://purl.uniprot.org/unirules/MF_02119http://www.w3.org/ns/shacl#rulehttp://purl.uniprot.org/unirules/MF_02119#construct
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