| http://purl.uniprot.org/unirules/MF_02129#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:757327 up:source unirule:MF_02129 .
_:757328 up:source unirule:MF_02129 .
_:757329 up:source unirule:MF_02129 .
_:757330 up:source unirule:MF_02129 .
_:757331 up:source unirule:MF_02129 .
_:757332 up:source unirule:MF_02129 .
_:757333 up:source unirule:MF_02129 .
_:757334 up:source unirule:MF_02129 .
_:757335 up:source unirule:MF_02129 .
_:757336 up:source unirule:MF_02129 .
_:757337 up:source unirule:MF_02129 .
_:757338 up:source unirule:MF_02129 .
_:757339 up:source unirule:MF_02129 .
_:757340 up:source unirule:MF_02129 .
_:757341 up:source unirule:MF_02129 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation5 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0005737 ,
GO:0009437 ,
GO:0047728 ,
GO:0051287 ,
keyword:520 ,
keyword:560 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.1.1.108' ;
up:fullName 'L-carnitine dehydrogenase' ;
up:shortName 'L-CDH' ,
'CDH' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3-dehydrocarnitine.' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 a up:Pathway_Annotation ;
rdfs:comment 'Amine and polyamine metabolism; carnitine metabolism.' .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the 3-hydroxyacyl-CoA dehydrogenase family. L-carnitine dehydrogenase subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:57540 .
_:757342 a rdf:Statement ;
up:attribution _:757327 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:757343 a rdf:Statement ;
up:attribution _:757328 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:757344 a rdf:Statement ;
up:attribution _:757329 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:757345 a rdf:Statement ;
up:attribution _:757330 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:757346 a rdf:Statement ;
up:attribution _:757331 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:757347 a rdf:Statement ;
up:attribution _:757332 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:757348 a rdf:Statement ;
up:attribution _:757333 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:757349 a rdf:Statement ;
up:attribution _:757334 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:757350 a rdf:Statement ;
up:attribution _:757335 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:757351 a rdf:Statement ;
up:attribution _:757336 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:757352 a rdf:Statement ;
up:attribution _:757337 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0047728 .
_:757353 a rdf:Statement ;
up:attribution _:757338 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051287 .
_:757354 a rdf:Statement ;
up:attribution _:757339 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009437 .
_:757355 a rdf:Statement ;
up:attribution _:757340 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:757356 a rdf:Statement ;
up:source unirule:MF_02129 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:757357 a rdf:Statement ;
up:attribution _:757341 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02129
#Rule MF_02129 Created by:? on:2012-05-04 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02129 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_02129a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02129a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_02129a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02129a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02129a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02129a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02129a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch20 faldo:location ?templateMotifSequenceMatchRegionD7URM021 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD7URM023 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD7URM0MF_0212916 .
?templateMotifSequenceMatchRegionD7URM021 faldo:begin ?templateMotifSequenceMatchBeginD7URM022 .
?templateMotifSequenceMatchBeginD7URM022 faldo:position ?templateMotifSequenceMatchBeginPositionD7URM017 ;
faldo:reference isoform:D7URM0-1 .
?templateMotifSequenceProfileAlignmentOperationD7URM023 edam:has_input signature:MF_02129 ;
rdf:type edam:operation_0300 .
?targetMotifMatch24 faldo:location ?targetMotifMatchRegionMatch25 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0212927 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD7URM0MF_0212918 .
?targetMotifMatchRegionMatch25 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0212926 .
?targetMotifMatchRegionMatchBeginMF_0212926 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0212919 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0212927 edam:has_input signature:MF_02129 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD7URM0MF_0212916, 1, (STRLEN(?templateMotifCigarD7URM0MF_0212916) - STRLEN(REPLACE(?templateMotifCigarD7URM0MF_0212916, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionD7URM017) + 1)), '}'), '')))), '[a-z]', '')) AS ?step128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD7URM0MF_0212918, 1, (STRLEN(?targetMotifMatchCigarD7URM0MF_0212918) - STRLEN(REPLACE(?targetMotifMatchCigarD7URM0MF_0212918, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD7URM0MF_0212918, 1, (STRLEN(?targetMotifMatchCigarD7URM0MF_0212918) - STRLEN(REPLACE(?targetMotifMatchCigarD7URM0MF_0212918, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), '')))), '[^-]', ''))) AS ?step229) .
BIND(((?step229 + ?targetMotifMatchRegionMatchBeginPositionMF_0212919) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD7URM0MF_0212916, 1, (STRLEN(?templateMotifCigarD7URM0MF_0212916) - STRLEN(REPLACE(?templateMotifCigarD7URM0MF_0212916, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionD7URM017) + 1)), '}'), '')))), '[a-z]', '')) AS ?step130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD7URM0MF_0212918, 1, (STRLEN(?targetMotifMatchCigarD7URM0MF_0212918) - STRLEN(REPLACE(?targetMotifMatchCigarD7URM0MF_0212918, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD7URM0MF_0212918, 1, (STRLEN(?targetMotifMatchCigarD7URM0MF_0212918) - STRLEN(REPLACE(?targetMotifMatchCigarD7URM0MF_0212918, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), '')))), '[^-]', ''))) AS ?step231) .
BIND(((?step231 + ?targetMotifMatchRegionMatchBeginPositionMF_0212919) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]G[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]G', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02129a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
}
"xsd:string |
