| http://purl.uniprot.org/unirules/MF_02130#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:757609 up:source unirule:MF_02130 .
_:757610 up:source unirule:MF_02130 .
_:757611 up:source unirule:MF_02130 .
_:757612 up:source unirule:MF_02130 .
_:757613 up:source unirule:MF_02130 .
_:757614 up:source unirule:MF_02130 .
_:757615 up:source unirule:MF_02130 .
_:757616 up:source unirule:MF_02130 .
_:757617 up:source unirule:MF_02130 .
_:757618 up:source unirule:MF_02130 .
_:757619 up:source unirule:MF_02130 .
_:757620 up:source unirule:MF_02130 .
_:757621 up:source unirule:MF_02130 .
_:757622 up:source unirule:MF_02130 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0004150 ,
keyword:456 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.1.2.25' ;
up:fullName 'Dihydroneopterin aldolase' ;
up:shortName 'DHNA' ;
rdf:type up:Structured_Name .
?name1 up:fullName '7,8-dihydroneopterin aldolase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'mptD' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the conversion of 7,8-dihydroneopterin (H2Neo) to 6-hydroxymethyl-7,8-dihydropterin (6-HMD).' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the archaeal dihydroneopterin aldolase family.' .
?case8 up:classifiedWith GO:0046654 ,
keyword:289 .
?case9 up:classifiedWith GO:2001118 .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf ?molecule15 .
?molecule15 rdfs:label 'substrate' .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf ?molecule23 .
?molecule23 rdfs:label 'substrate' .
_:757623 a rdf:Statement ;
up:attribution _:757609 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:757624 a rdf:Statement ;
up:attribution _:757610 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:757625 a rdf:Statement ;
up:attribution _:757611 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:757626 a rdf:Statement ;
up:attribution _:757612 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:757627 a rdf:Statement ;
up:attribution _:757613 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:757628 a rdf:Statement ;
up:attribution _:757614 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:757629 a rdf:Statement ;
up:attribution _:757615 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:757630 a rdf:Statement ;
up:attribution _:757616 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:757631 a rdf:Statement ;
up:attribution _:757617 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004150 .
_:757632 a rdf:Statement ;
up:attribution _:757618 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:289 .
_:757633 a rdf:Statement ;
up:attribution _:757619 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046654 .
_:757634 a rdf:Statement ;
up:attribution _:757620 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:2001118 .
_:757635 a rdf:Statement ;
up:source unirule:MF_02130 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:757636 a rdf:Statement ;
up:attribution _:757621 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:757637 a rdf:Statement ;
up:source unirule:MF_02130 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:757638 a rdf:Statement ;
up:attribution _:757622 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02130
#Rule MF_02130 Created by:? on:2012-10-12 Modified by:Edouard de Castro on:2022-05-14
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02130 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_02130a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02130a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02130a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02130a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02130a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02130a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch30 faldo:location ?templateMotifSequenceMatchRegionQ5785131 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5785133 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57851MF_0213026 .
?templateMotifSequenceMatchRegionQ5785131 faldo:begin ?templateMotifSequenceMatchBeginQ5785132 .
?templateMotifSequenceMatchBeginQ5785132 faldo:position ?templateMotifSequenceMatchBeginPositionQ5785127 ;
faldo:reference isoform:Q57851-1 .
?templateMotifSequenceProfileAlignmentOperationQ5785133 edam:has_input signature:MF_02130 ;
rdf:type edam:operation_0300 .
?targetMotifMatch34 faldo:location ?targetMotifMatchRegionMatch35 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0213037 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57851MF_0213028 .
?targetMotifMatchRegionMatch35 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0213036 .
?targetMotifMatchRegionMatchBeginMF_0213036 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0213029 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0213037 edam:has_input signature:MF_02130 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57851MF_0213026, 1, (STRLEN(?templateMotifCigarQ57851MF_0213026) - STRLEN(REPLACE(?templateMotifCigarQ57851MF_0213026, CONCAT('^(?:-*[^-]){', STR(((25 - ?templateMotifSequenceMatchBeginPositionQ5785127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57851MF_0213028, 1, (STRLEN(?targetMotifMatchCigarQ57851MF_0213028) - STRLEN(REPLACE(?targetMotifMatchCigarQ57851MF_0213028, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57851MF_0213028, 1, (STRLEN(?targetMotifMatchCigarQ57851MF_0213028) - STRLEN(REPLACE(?targetMotifMatchCigarQ57851MF_0213028, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), '')))), '[^-]', ''))) AS ?step239) .
BIND(((?step239 + ?targetMotifMatchRegionMatchBeginPositionMF_0213029) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02130a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionQ5785146 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5785148 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57851MF_0213041 .
?templateMotifSequenceMatchRegionQ5785146 faldo:begin ?templateMotifSequenceMatchBeginQ5785147 .
?templateMotifSequenceMatchBeginQ5785147 faldo:position ?templateMotifSequenceMatchBeginPositionQ5785142 ;
faldo:reference isoform:Q57851-1 .
?templateMotifSequenceProfileAlignmentOperationQ5785148 edam:has_input signature:MF_02130 ;
rdf:type edam:operation_0300 .
?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0213052 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57851MF_0213043 .
?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0213051 .
?targetMotifMatchRegionMatchBeginMF_0213051 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0213044 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0213052 edam:has_input signature:MF_02130 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57851MF_0213041, 1, (STRLEN(?templateMotifCigarQ57851MF_0213041) - STRLEN(REPLACE(?templateMotifCigarQ57851MF_0213041, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionQ5785142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57851MF_0213043, 1, (STRLEN(?targetMotifMatchCigarQ57851MF_0213043) - STRLEN(REPLACE(?targetMotifMatchCigarQ57851MF_0213043, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57851MF_0213043, 1, (STRLEN(?targetMotifMatchCigarQ57851MF_0213043) - STRLEN(REPLACE(?targetMotifMatchCigarQ57851MF_0213043, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0213044) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_02130a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon56 {taxon:183963 taxon:2207}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon56 .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon57 {taxon:183925 taxon:183939 taxon:224756 taxon:183988 taxon:183980}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon57 .
BIND(?this AS ?case9) .
}
}
"xsd:string |
