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http://purl.uniprot.org/unirules/MF_02133#constructhttp://www.w3.org/ns/shacl#construct"CONSTRUCT { _:758611 up:source unirule:MF_02133 . _:758612 up:source unirule:MF_02133 . _:758613 up:source unirule:MF_02133 . _:758614 up:source unirule:MF_02133 . _:758615 up:source unirule:MF_02133 . _:758616 up:source unirule:MF_02133 . _:758617 up:source unirule:MF_02133 . _:758618 up:source unirule:MF_02133 . _:758619 up:source unirule:MF_02133 . _:758620 up:source unirule:MF_02133 . ?this up:annotation ?annotation2 ; up:classifiedWith GO:0031386 , keyword:1017 , keyword:833 ; up:recommendedName ?name0 . ?name0 up:fullName 'Prokaryotic ubiquitin-like protein UBact' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'ubact' . ?annotation2 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the ubiquitin-like protein UBact family.' . ?pfs6 up:annotation ?annotation7 . ?annotation7 faldo:begin ?pfsb8 ; faldo:end ?pfse9 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Deamidated glutamine' . ?pfsb8 faldo:position ?thisPositionOn10 ; rdf:type faldo:ExactPosition . ?pfse9 faldo:position ?thisPositionOn11 ; rdf:type faldo:ExactPosition . ?pfs12 up:annotation ?annotation13 . ?annotation13 faldo:begin ?pfsb14 ; faldo:end ?pfse15 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Deamidated glutamine' . ?pfsb14 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfse15 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfs18 up:annotation ?annotation19 . ?annotation19 faldo:begin ?pfsb20 ; faldo:end ?pfse21 ; rdf:type up:Cross-link_Annotation ; rdfs:comment 'Isoglutamyl lysine isopeptide (Gln-Lys) (interchain with K-? in acceptor proteins)' . ?pfsb20 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfse21 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfs24 up:annotation ?annotation25 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; rdf:type up:Cross-link_Annotation ; rdfs:comment 'Isoglutamyl lysine isopeptide (Glu-Lys) (interchain with K-? in acceptor proteins)' . ?pfsb26 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . _:758621 a rdf:Statement ; up:attribution _:758611 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:758622 a rdf:Statement ; up:attribution _:758612 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:758623 a rdf:Statement ; up:attribution _:758613 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:758624 a rdf:Statement ; up:attribution _:758614 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1017 . _:758625 a rdf:Statement ; up:attribution _:758615 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:833 . _:758626 a rdf:Statement ; up:attribution _:758616 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0031386 . _:758627 a rdf:Statement ; up:source unirule:MF_02133 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:758628 a rdf:Statement ; up:attribution _:758617 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:758629 a rdf:Statement ; up:source unirule:MF_02133 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:758630 a rdf:Statement ; up:attribution _:758618 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:758631 a rdf:Statement ; up:source unirule:MF_02133 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:758632 a rdf:Statement ; up:attribution _:758619 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:758633 a rdf:Statement ; up:source unirule:MF_02133 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:758634 a rdf:Statement ; up:attribution _:758620 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_02133 #Rule MF_02133 Created by:? on:2017-09-05 Modified by:Catherine Rivoire on:2023-07-27 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_02133 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_02133a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_02133a2')) AS ?annotation2) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch34 faldo:location ?templateMotifSequenceMatchRegionM1YW2935 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationM1YW2937 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarM1YW29MF_0213330 . ?templateMotifSequenceMatchRegionM1YW2935 faldo:begin ?templateMotifSequenceMatchBeginM1YW2936 . ?templateMotifSequenceMatchBeginM1YW2936 faldo:position ?templateMotifSequenceMatchBeginPositionM1YW2931 ; faldo:reference isoform:M1YW29-1 . ?templateMotifSequenceProfileAlignmentOperationM1YW2937 edam:has_input signature:MF_02133 ; rdf:type edam:operation_0300 . ?targetMotifMatch38 faldo:location ?targetMotifMatchRegionMatch39 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0213341 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarM1YW29MF_0213332 . ?targetMotifMatchRegionMatch39 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0213340 . ?targetMotifMatchRegionMatchBeginMF_0213340 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0213333 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0213341 edam:has_input signature:MF_02133 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagdeamidation) . BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn10) . BIND(?thisPositionOn10 AS ?thisPositionOn11) . BIND(?this AS ?pfs1t42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb8) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse9) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn10, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_02133a7')) AS ?annotation7) . BIND(?this AS ?pfs6) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch47 faldo:location ?templateMotifSequenceMatchRegionM1YW2948 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationM1YW2950 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarM1YW29MF_0213343 . ?templateMotifSequenceMatchRegionM1YW2948 faldo:begin ?templateMotifSequenceMatchBeginM1YW2949 . ?templateMotifSequenceMatchBeginM1YW2949 faldo:position ?templateMotifSequenceMatchBeginPositionM1YW2944 ; faldo:reference isoform:M1YW29-1 . ?templateMotifSequenceProfileAlignmentOperationM1YW2950 edam:has_input signature:MF_02133 ; rdf:type edam:operation_0300 . ?targetMotifMatch51 faldo:location ?targetMotifMatchRegionMatch52 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0213354 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarM1YW29MF_0213345 . ?targetMotifMatchRegionMatch52 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0213353 . ?targetMotifMatchRegionMatchBeginMF_0213353 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0213346 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0213354 edam:has_input signature:MF_02133 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFT_1) . BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn16) . BIND(?thisPositionOn16 AS ?thisPositionOn17) . BIND(?this AS ?pfs2t55) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_02133a13')) AS ?annotation13) . BIND(?this AS ?pfs12) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch60 faldo:location ?templateMotifSequenceMatchRegionM1YW2961 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationM1YW2963 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarM1YW29MF_0213356 . ?templateMotifSequenceMatchRegionM1YW2961 faldo:begin ?templateMotifSequenceMatchBeginM1YW2962 . ?templateMotifSequenceMatchBeginM1YW2962 faldo:position ?templateMotifSequenceMatchBeginPositionM1YW2957 ; faldo:reference isoform:M1YW29-1 . ?templateMotifSequenceProfileAlignmentOperationM1YW2963 edam:has_input signature:MF_02133 ; rdf:type edam:operation_0300 . ?targetMotifMatch64 faldo:location ?targetMotifMatchRegionMatch65 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0213367 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarM1YW29MF_0213358 . ?targetMotifMatchRegionMatch65 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0213366 . ?targetMotifMatchRegionMatchBeginMF_0213366 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0213359 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0213367 edam:has_input signature:MF_02133 ; rdf:type edam:operation_0300 . BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn22) . BIND(?thisPositionOn22 AS ?thisPositionOn23) . BIND(?this AS ?pfs3t68) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) . FILTER (REGEX('[Q]', SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02133a19')) AS ?annotation19) . BIND(?this AS ?pfs18) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch73 faldo:location ?templateMotifSequenceMatchRegionM1YW2974 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationM1YW2976 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarM1YW29MF_0213369 . ?templateMotifSequenceMatchRegionM1YW2974 faldo:begin ?templateMotifSequenceMatchBeginM1YW2975 . ?templateMotifSequenceMatchBeginM1YW2975 faldo:position ?templateMotifSequenceMatchBeginPositionM1YW2970 ; faldo:reference isoform:M1YW29-1 . ?templateMotifSequenceProfileAlignmentOperationM1YW2976 edam:has_input signature:MF_02133 ; rdf:type edam:operation_0300 . ?targetMotifMatch77 faldo:location ?targetMotifMatchRegionMatch78 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0213380 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarM1YW29MF_0213371 . ?targetMotifMatchRegionMatch78 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0213379 . ?targetMotifMatchRegionMatchBeginMF_0213379 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0213372 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0213380 edam:has_input signature:MF_02133 ; rdf:type edam:operation_0300 . BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn28) . BIND(?thisPositionOn28 AS ?thisPositionOn29) . BIND(?this AS ?pfs4t81) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) . FILTER (REGEX('[E]', SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02133a25')) AS ?annotation25) . BIND(?this AS ?pfs24) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag82) . } BIND(IF(BOUND(?tagdeamidation), ?caseWithTag82, ?UNBOUND_VARIABLE) AS ?case3) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:203682 . BIND(?this AS ?case4) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:203682 . })) . BIND(?this AS ?case5) . } } "xsd:string
http://purl.uniprot.org/unirules/MF_02133http://www.w3.org/ns/shacl#rulehttp://purl.uniprot.org/unirules/MF_02133#construct
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