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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_02206#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02206#construct-template-56 |
| http://purl.uniprot.org/unirules/MF_02206#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02206#construct-template-57 |
| http://purl.uniprot.org/unirules/MF_02206#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02206#construct-template-58 |
| http://purl.uniprot.org/unirules/MF_02206#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02206#construct-template-59 |
| http://purl.uniprot.org/unirules/MF_02206#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_02206#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_02206#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_02206#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_02206#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_02206#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:761050 up:source unirule:MF_02206 . _:761051 up:source unirule:MF_02206 . _:761052 up:source unirule:MF_02206 . _:761053 up:source unirule:MF_02206 . _:761054 up:source unirule:MF_02206 . _:761055 up:source unirule:MF_02206 . _:761056 up:source unirule:MF_02206 . _:761057 up:source unirule:MF_02206 . _:761058 up:source unirule:MF_02206 . _:761059 up:source unirule:MF_02206 . _:761060 up:source unirule:MF_02206 . _:761061 up:source unirule:MF_02206 . _:761062 up:source unirule:MF_02206 . _:761063 up:source unirule:MF_02206 . ?this up:annotation ?annotation2 , ?annotation3 ; up:classifiedWith GO:0005524 , GO:0008408 , keyword:269 , keyword:378 , keyword:540 , keyword:547 , keyword:67 ; up:recommendedName ?name0 . ?name0 up:ecName '3.1.-.-' ; up:fullName "3'-5' exonuclease DinG" ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'dinG' . ?annotation2 a up:Function_Annotation ; rdfs:comment "3'-5' exonuclease." . ?annotation3 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the helicase family. DinG subfamily. Type 2 sub-subfamily.' . ?pfs4 up:annotation ?annotation5 . ?annotation5 faldo:begin ?pfsb6 ; faldo:end ?pfse7 ; rdf:type up:Domain_Extent_Annotation ; rdfs:comment 'Helicase ATP-binding' . ?pfsb6 faldo:position ?thisPositionOn8 ; rdf:type faldo:ExactPosition . ?pfse7 faldo:position ?thisPositionOn9 ; rdf:type faldo:ExactPosition . ?pfs10 up:annotation ?annotation11 . ?annotation11 faldo:begin ?pfsb12 ; faldo:end ?pfse13 ; up:ligand ?ligand14 ; rdf:type up:Binding_Site_Annotation . ?pfsb12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse13 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?ligand14 rdfs:subClassOf chebi:30616 . ?pfs17 up:annotation ?annotation18 . ?annotation18 faldo:begin ?pfsb19 ; faldo:end ?pfse20 ; rdf:type up:Motif_Annotation ; rdfs:comment 'DEAH box' . ?pfsb19 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse20 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . _:761064 a rdf:Statement ; up:attribution _:761050 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:761065 a rdf:Statement ; up:attribution _:761051 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:761066 a rdf:Statement ; up:attribution _:761052 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:761067 a rdf:Statement ; up:attribution _:761053 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:761068 a rdf:Statement ; up:attribution _:761054 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:761069 a rdf:Statement ; up:attribution _:761055 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:269 . _:761070 a rdf:Statement ; up:attribution _:761056 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:761071 a rdf:Statement ; up:attribution _:761057 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:540 . _:761072 a rdf:Statement ; up:attribution _:761058 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:761073 a rdf:Statement ; up:attribution _:761059 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:761074 a rdf:Statement ; up:attribution _:761060 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008408 . _:761075 a rdf:Statement ; up:source unirule:MF_02206 ; rdf:subject ?pfs4 ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:761076 a rdf:Statement ; up:attribution _:761061 ; rdf:subject ?pfs4 ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:761077 a rdf:Statement ; up:source unirule:MF_02206 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:761078 a rdf:Statement ; up:attribution _:761062 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:761079 a rdf:Statement ; up:source unirule:MF_02206 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:761080 a rdf:Statement ; up:attribution _:761063 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_02206 #Rule MF_02206 Created by:? on:2018-02-15 Modified by:Edouard de Castro on:2023-06-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_02206 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_02206a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_02206a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_02206a3')) AS ?annotation3) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch27 faldo:location ?templateMotifSequenceMatchRegionQ6GGV428 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6GGV430 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ6GGV4MF_0220623 . ?templateMotifSequenceMatchRegionQ6GGV428 faldo:begin ?templateMotifSequenceMatchBeginQ6GGV429 . ?templateMotifSequenceMatchBeginQ6GGV429 faldo:position ?templateMotifSequenceMatchBeginPositionQ6GGV424 ; faldo:reference isoform:Q6GGV4-1 . ?templateMotifSequenceProfileAlignmentOperationQ6GGV430 edam:has_input signature:MF_02206 ; rdf:type edam:operation_0300 . ?targetMotifMatch31 faldo:location ?targetMotifMatchRegionMatch32 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0220634 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ6GGV4MF_0220625 . ?targetMotifMatchRegionMatch32 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0220633 . ?targetMotifMatchRegionMatchBeginMF_0220633 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0220626 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0220634 edam:has_input signature:MF_02206 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6GGV4MF_0220623, 1, (STRLEN(?templateMotifCigarQ6GGV4MF_0220623) - STRLEN(REPLACE(?templateMotifCigarQ6GGV4MF_0220623, CONCAT('^(?:-*[^-]){', STR(((241 - ?templateMotifSequenceMatchBeginPositionQ6GGV424) + 1)), '}'), '')))), '[a-z]', '')) AS ?step135) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6GGV4MF_0220625, 1, (STRLEN(?targetMotifMatchCigarQ6GGV4MF_0220625) - STRLEN(REPLACE(?targetMotifMatchCigarQ6GGV4MF_0220625, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6GGV4MF_0220625, 1, (STRLEN(?targetMotifMatchCigarQ6GGV4MF_0220625) - STRLEN(REPLACE(?targetMotifMatchCigarQ6GGV4MF_0220625, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step135), '}'), '')))), '[^-]', ''))) AS ?step236) . BIND(((?step236 + ?targetMotifMatchRegionMatchBeginPositionMF_0220626) - 1) AS ?thisPositionOn8) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6GGV4MF_0220623, 1, (STRLEN(?templateMotifCigarQ6GGV4MF_0220623) - STRLEN(REPLACE(?templateMotifCigarQ6GGV4MF_0220623, CONCAT('^(?:-*[^-]){', STR(((496 - ?templateMotifSequenceMatchBeginPositionQ6GGV424) + 1)), '}'), '')))), '[a-z]', '')) AS ?step137) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6GGV4MF_0220625, 1, (STRLEN(?targetMotifMatchCigarQ6GGV4MF_0220625) - STRLEN(REPLACE(?targetMotifMatchCigarQ6GGV4MF_0220625, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6GGV4MF_0220625, 1, (STRLEN(?targetMotifMatchCigarQ6GGV4MF_0220625) - STRLEN(REPLACE(?targetMotifMatchCigarQ6GGV4MF_0220625, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), '')))), '[^-]', ''))) AS ?step238) . BIND(((?step238 + ?targetMotifMatchRegionMatchBeginPositionMF_0220626) - 1) AS ?thisPositionOn9) . BIND(?this AS ?pfs1t39) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn8))) AS ?pfsb6) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn9))) AS ?pfse7) . FILTER ((BOUND(?thisPositionOn8) && BOUND(?thisPositionOn9))) . BIND(URI(CONCAT(STR(?this), '#MF_02206a5')) AS ?annotation5) . BIND(?this AS ?pfs4) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionQ6GGV445 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6GGV447 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ6GGV4MF_0220640 . ?templateMotifSequenceMatchRegionQ6GGV445 faldo:begin ?templateMotifSequenceMatchBeginQ6GGV446 . ?templateMotifSequenceMatchBeginQ6GGV446 faldo:position ?templateMotifSequenceMatchBeginPositionQ6GGV441 ; faldo:reference isoform:Q6GGV4-1 . ?templateMotifSequenceProfileAlignmentOperationQ6GGV447 edam:has_input signature:MF_02206 ; rdf:type edam:operation_0300 . ?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0220651 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ6GGV4MF_0220642 . ?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0220650 . ?targetMotifMatchRegionMatchBeginMF_0220650 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0220643 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0220651 edam:has_input signature:MF_02206 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6GGV4MF_0220640, 1, (STRLEN(?templateMotifCigarQ6GGV4MF_0220640) - STRLEN(REPLACE(?templateMotifCigarQ6GGV4MF_0220640, CONCAT('^(?:-*[^-]){', STR(((276 - ?templateMotifSequenceMatchBeginPositionQ6GGV441) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6GGV4MF_0220642, 1, (STRLEN(?targetMotifMatchCigarQ6GGV4MF_0220642) - STRLEN(REPLACE(?targetMotifMatchCigarQ6GGV4MF_0220642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6GGV4MF_0220642, 1, (STRLEN(?targetMotifMatchCigarQ6GGV4MF_0220642) - STRLEN(REPLACE(?targetMotifMatchCigarQ6GGV4MF_0220642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) . BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0220643) - 1) AS ?thisPositionOn15) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6GGV4MF_0220640, 1, (STRLEN(?templateMotifCigarQ6GGV4MF_0220640) - STRLEN(REPLACE(?templateMotifCigarQ6GGV4MF_0220640, CONCAT('^(?:-*[^-]){', STR(((283 - ?templateMotifSequenceMatchBeginPositionQ6GGV441) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6GGV4MF_0220642, 1, (STRLEN(?targetMotifMatchCigarQ6GGV4MF_0220642) - STRLEN(REPLACE(?targetMotifMatchCigarQ6GGV4MF_0220642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6GGV4MF_0220642, 1, (STRLEN(?targetMotifMatchCigarQ6GGV4MF_0220642) - STRLEN(REPLACE(?targetMotifMatchCigarQ6GGV4MF_0220642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) . BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0220643) - 1) AS ?thisPositionOn16) . BIND(?this AS ?pfs1t56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) . FILTER (REGEX('A[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)G[ARNDCQEGHILKMFPSTWYVBZJUOX]GK[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)))) . BIND(URI(CONCAT(STR(?this), '#MF_02206a11')) AS ?annotation11) . BIND(?this AS ?pfs10) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionQ6GGV462 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6GGV464 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ6GGV4MF_0220657 . ?templateMotifSequenceMatchRegionQ6GGV462 faldo:begin ?templateMotifSequenceMatchBeginQ6GGV463 . ?templateMotifSequenceMatchBeginQ6GGV463 faldo:position ?templateMotifSequenceMatchBeginPositionQ6GGV458 ; faldo:reference isoform:Q6GGV4-1 . ?templateMotifSequenceProfileAlignmentOperationQ6GGV464 edam:has_input signature:MF_02206 ; rdf:type edam:operation_0300 . ?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0220668 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ6GGV4MF_0220659 . ?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0220667 . ?targetMotifMatchRegionMatchBeginMF_0220667 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0220660 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0220668 edam:has_input signature:MF_02206 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6GGV4MF_0220657, 1, (STRLEN(?templateMotifCigarQ6GGV4MF_0220657) - STRLEN(REPLACE(?templateMotifCigarQ6GGV4MF_0220657, CONCAT('^(?:-*[^-]){', STR(((448 - ?templateMotifSequenceMatchBeginPositionQ6GGV458) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6GGV4MF_0220659, 1, (STRLEN(?targetMotifMatchCigarQ6GGV4MF_0220659) - STRLEN(REPLACE(?targetMotifMatchCigarQ6GGV4MF_0220659, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6GGV4MF_0220659, 1, (STRLEN(?targetMotifMatchCigarQ6GGV4MF_0220659) - STRLEN(REPLACE(?targetMotifMatchCigarQ6GGV4MF_0220659, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) . BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0220660) - 1) AS ?thisPositionOn21) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6GGV4MF_0220657, 1, (STRLEN(?templateMotifCigarQ6GGV4MF_0220657) - STRLEN(REPLACE(?templateMotifCigarQ6GGV4MF_0220657, CONCAT('^(?:-*[^-]){', STR(((451 - ?templateMotifSequenceMatchBeginPositionQ6GGV458) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6GGV4MF_0220659, 1, (STRLEN(?targetMotifMatchCigarQ6GGV4MF_0220659) - STRLEN(REPLACE(?targetMotifMatchCigarQ6GGV4MF_0220659, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6GGV4MF_0220659, 1, (STRLEN(?targetMotifMatchCigarQ6GGV4MF_0220659) - STRLEN(REPLACE(?targetMotifMatchCigarQ6GGV4MF_0220659, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) . BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0220660) - 1) AS ?thisPositionOn22) . BIND(?this AS ?pfs1t73) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) . FILTER (REGEX('DEA[HQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)))) . BIND(URI(CONCAT(STR(?this), '#MF_02206a18')) AS ?annotation18) . BIND(?this AS ?pfs17) . } } "xsd:string |
| http://purl.uniprot.org/unirules/MF_02206 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_02206#construct |