| http://purl.uniprot.org/unirules/MF_02208#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02208#construct-template-83 |
| http://purl.uniprot.org/unirules/MF_02208#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02208#construct-template-84 |
| http://purl.uniprot.org/unirules/MF_02208#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02208#construct-template-60 |
| http://purl.uniprot.org/unirules/MF_02208#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02208#construct-template-81 |
| http://purl.uniprot.org/unirules/MF_02208#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02208#construct-template-82 |
| http://purl.uniprot.org/unirules/MF_02208#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02208#construct-template-80 |
| http://purl.uniprot.org/unirules/MF_02208#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02208#construct-template-27 |
| http://purl.uniprot.org/unirules/MF_02208#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02208#construct-template-29 |
| http://purl.uniprot.org/unirules/MF_02208#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02208#construct-template-28 |
| http://purl.uniprot.org/unirules/MF_02208#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02208#construct-template-49 |
| http://purl.uniprot.org/unirules/MF_02208#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02208#construct-template-25 |
| http://purl.uniprot.org/unirules/MF_02208#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02208#construct-template-26 |
| http://purl.uniprot.org/unirules/MF_02208#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02208#construct-template-47 |
| http://purl.uniprot.org/unirules/MF_02208#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02208#construct-template-23 |
| http://purl.uniprot.org/unirules/MF_02208#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02208#construct-template-48 |
| http://purl.uniprot.org/unirules/MF_02208#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02208#construct-template-24 |
| http://purl.uniprot.org/unirules/MF_02208#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02208#construct-template-69 |
| http://purl.uniprot.org/unirules/MF_02208#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02208#construct-template-45 |
| http://purl.uniprot.org/unirules/MF_02208#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02208#construct-template-21 |
| http://purl.uniprot.org/unirules/MF_02208#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02208#construct-template-46 |
| http://purl.uniprot.org/unirules/MF_02208#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02208#construct-template-22 |
| http://purl.uniprot.org/unirules/MF_02208#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_02208#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_02208#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_02208#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_02208#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_02208#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:761752 up:source unirule:MF_02208 .
_:761753 up:source unirule:MF_02208 .
_:761754 up:source unirule:MF_02208 .
_:761755 up:source unirule:MF_02208 .
_:761756 up:source unirule:MF_02208 .
_:761757 up:source unirule:MF_02208 .
_:761758 up:source unirule:MF_02208 .
_:761759 up:source unirule:MF_02208 .
_:761760 up:source unirule:MF_02208 .
_:761761 up:source unirule:MF_02208 .
_:761762 up:source unirule:MF_02208 .
_:761763 up:source unirule:MF_02208 .
_:761764 up:source unirule:MF_02208 .
_:761765 up:source unirule:MF_02208 .
_:761766 up:source unirule:MF_02208 .
_:761767 up:source unirule:MF_02208 .
_:761768 up:source unirule:MF_02208 .
_:761769 up:source unirule:MF_02208 .
_:761770 up:source unirule:MF_02208 .
_:761771 up:source unirule:MF_02208 .
_:761772 up:source unirule:MF_02208 .
_:761773 up:source unirule:MF_02208 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0005524 ,
GO:0005737 ,
GO:0009252 ,
GO:0016881 ,
keyword:131 ,
keyword:132 ,
keyword:133 ,
keyword:436 ,
keyword:547 ,
keyword:573 ,
keyword:67 ,
keyword:961 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.3.2.53' ;
up:fullName 'UDP-N-acetylmuramoyl-L-alanine--L-glutamate ligase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'UDP-N-acetylmuramoyl-L-alanyl-L-glutamate synthetase' ;
up:shortName 'UDP-MurNAc-L-Ala-L-Glu synthetase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'murD2' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Cell wall formation. Catalyzes the addition of L-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Cell wall biogenesis; peptidoglycan biosynthesis.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the MurCDEF family. MurD2 subfamily.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:30616 .
_:761774 a rdf:Statement ;
up:attribution _:761752 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:761775 a rdf:Statement ;
up:attribution _:761753 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:761776 a rdf:Statement ;
up:attribution _:761754 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:761777 a rdf:Statement ;
up:attribution _:761755 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:761778 a rdf:Statement ;
up:attribution _:761756 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:761779 a rdf:Statement ;
up:attribution _:761757 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:761780 a rdf:Statement ;
up:attribution _:761758 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:761781 a rdf:Statement ;
up:attribution _:761759 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:761782 a rdf:Statement ;
up:attribution _:761760 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:761783 a rdf:Statement ;
up:attribution _:761761 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:131 .
_:761784 a rdf:Statement ;
up:attribution _:761762 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:132 .
_:761785 a rdf:Statement ;
up:attribution _:761763 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:133 .
_:761786 a rdf:Statement ;
up:attribution _:761764 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:961 .
_:761787 a rdf:Statement ;
up:attribution _:761765 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:761788 a rdf:Statement ;
up:attribution _:761766 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:761789 a rdf:Statement ;
up:attribution _:761767 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:761790 a rdf:Statement ;
up:attribution _:761768 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:573 .
_:761791 a rdf:Statement ;
up:attribution _:761769 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:761792 a rdf:Statement ;
up:attribution _:761770 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016881 .
_:761793 a rdf:Statement ;
up:attribution _:761771 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009252 .
_:761794 a rdf:Statement ;
up:attribution _:761772 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:761795 a rdf:Statement ;
up:source unirule:MF_02208 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:761796 a rdf:Statement ;
up:attribution _:761773 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02208
#Rule MF_02208 Created by:? on:2019-01-21 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02208 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_02208a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02208a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02208a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02208a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02208a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02208a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02208a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch21 faldo:location ?templateMotifSequenceMatchRegionQ2P5V222 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ2P5V224 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ2P5V2MF_0220817 .
?templateMotifSequenceMatchRegionQ2P5V222 faldo:begin ?templateMotifSequenceMatchBeginQ2P5V223 .
?templateMotifSequenceMatchBeginQ2P5V223 faldo:position ?templateMotifSequenceMatchBeginPositionQ2P5V218 ;
faldo:reference isoform:Q2P5V2-1 .
?templateMotifSequenceProfileAlignmentOperationQ2P5V224 edam:has_input signature:MF_02208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch25 faldo:location ?targetMotifMatchRegionMatch26 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0220828 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ2P5V2MF_0220819 .
?targetMotifMatchRegionMatch26 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0220827 .
?targetMotifMatchRegionMatchBeginMF_0220827 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0220820 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0220828 edam:has_input signature:MF_02208 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ2P5V2MF_0220817, 1, (STRLEN(?templateMotifCigarQ2P5V2MF_0220817) - STRLEN(REPLACE(?templateMotifCigarQ2P5V2MF_0220817, CONCAT('^(?:-*[^-]){', STR(((122 - ?templateMotifSequenceMatchBeginPositionQ2P5V218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ2P5V2MF_0220819, 1, (STRLEN(?targetMotifMatchCigarQ2P5V2MF_0220819) - STRLEN(REPLACE(?targetMotifMatchCigarQ2P5V2MF_0220819, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ2P5V2MF_0220819, 1, (STRLEN(?targetMotifMatchCigarQ2P5V2MF_0220819) - STRLEN(REPLACE(?targetMotifMatchCigarQ2P5V2MF_0220819, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), '')))), '[^-]', ''))) AS ?step230) .
BIND(((?step230 + ?targetMotifMatchRegionMatchBeginPositionMF_0220820) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ2P5V2MF_0220817, 1, (STRLEN(?templateMotifCigarQ2P5V2MF_0220817) - STRLEN(REPLACE(?templateMotifCigarQ2P5V2MF_0220817, CONCAT('^(?:-*[^-]){', STR(((128 - ?templateMotifSequenceMatchBeginPositionQ2P5V218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ2P5V2MF_0220819, 1, (STRLEN(?targetMotifMatchCigarQ2P5V2MF_0220819) - STRLEN(REPLACE(?targetMotifMatchCigarQ2P5V2MF_0220819, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ2P5V2MF_0220819, 1, (STRLEN(?targetMotifMatchCigarQ2P5V2MF_0220819) - STRLEN(REPLACE(?targetMotifMatchCigarQ2P5V2MF_0220819, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), '')))), '[^-]', ''))) AS ?step232) .
BIND(((?step232 + ?targetMotifMatchRegionMatchBeginPositionMF_0220820) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER (REGEX('G[TS][KN]GK[ST]T', SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02208a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
}
"xsd:string |
