| http://purl.uniprot.org/unirules/MF_02221#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:766655 up:source unirule:MF_02221 .
_:766656 up:source unirule:MF_02221 .
_:766657 up:source unirule:MF_02221 .
_:766658 up:source unirule:MF_02221 .
_:766659 up:source unirule:MF_02221 .
_:766660 up:source unirule:MF_02221 .
_:766661 up:source unirule:MF_02221 .
_:766662 up:source unirule:MF_02221 .
_:766663 up:source unirule:MF_02221 .
_:766664 up:source unirule:MF_02221 .
_:766665 up:source unirule:MF_02221 .
_:766666 up:source unirule:MF_02221 .
_:766667 up:source unirule:MF_02221 .
_:766668 up:source unirule:MF_02221 .
_:766669 up:source unirule:MF_02221 .
_:766670 up:source unirule:MF_02221 .
_:766671 up:source unirule:MF_02221 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0000287 ,
GO:0004087 ,
GO:0005524 ,
GO:0030145 ,
keyword:436 ,
keyword:460 ,
keyword:464 ,
keyword:479 ,
keyword:547 ,
keyword:67 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.3.4.16' ;
up:fullName 'Carbamoyl-phosphate synthase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Carbamoyl phosphate synthetase' ;
up:shortName 'CPSase' ;
rdf:type up:Structured_Name .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the synthesis of carbamoyl phosphate from ATP, ammonium and bicarbonate. Proceeds via a three-step mechanism, i.e. the phosphorylation of hydrogencarbonate to carboxyphosphate, a nucleophilic attack of ammonia on carboxyphosphate yielding carbamate, and the phosphorylation of carbamate forming carbamoyl phosphate.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:18420 ,
chebi:29035 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 magnesium or manganese ions per subunit' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the small carbamoyl-phosphate synthase family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf chebi:30616 .
_:766672 a rdf:Statement ;
up:attribution _:766655 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:766673 a rdf:Statement ;
up:attribution _:766656 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:766674 a rdf:Statement ;
up:attribution _:766657 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:766675 a rdf:Statement ;
up:attribution _:766658 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:766676 a rdf:Statement ;
up:attribution _:766659 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:766677 a rdf:Statement ;
up:attribution _:766660 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:766678 a rdf:Statement ;
up:attribution _:766661 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:766679 a rdf:Statement ;
up:attribution _:766662 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:766680 a rdf:Statement ;
up:attribution _:766663 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:766681 a rdf:Statement ;
up:attribution _:766664 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:766682 a rdf:Statement ;
up:attribution _:766665 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:766683 a rdf:Statement ;
up:attribution _:766666 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:766684 a rdf:Statement ;
up:attribution _:766667 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:766685 a rdf:Statement ;
up:attribution _:766668 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004087 .
_:766686 a rdf:Statement ;
up:attribution _:766669 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:766687 a rdf:Statement ;
up:attribution _:766670 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030145 .
_:766688 a rdf:Statement ;
up:source unirule:MF_02221 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:766689 a rdf:Statement ;
up:attribution _:766671 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02221
#Rule MF_02221 Created by:? on:2019-08-06 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon14 {taxon:183925 taxon:183988}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02221 .
?thisOrganism rdfs:subClassOf+ ?supertaxon14 .
BIND(URI(CONCAT(STR(?this), '#MF_02221a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02221a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02221a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02221a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02221a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02221a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch19 faldo:location ?templateMotifSequenceMatchRegionA5UK3820 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA5UK3822 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA5UK38MF_0222115 .
?templateMotifSequenceMatchRegionA5UK3820 faldo:begin ?templateMotifSequenceMatchBeginA5UK3821 .
?templateMotifSequenceMatchBeginA5UK3821 faldo:position ?templateMotifSequenceMatchBeginPositionA5UK3816 ;
faldo:reference isoform:A5UK38-1 .
?templateMotifSequenceProfileAlignmentOperationA5UK3822 edam:has_input signature:MF_02221 ;
rdf:type edam:operation_0300 .
?targetMotifMatch23 faldo:location ?targetMotifMatchRegionMatch24 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0222126 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA5UK38MF_0222117 .
?targetMotifMatchRegionMatch24 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0222125 .
?targetMotifMatchRegionMatchBeginMF_0222125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0222118 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0222126 edam:has_input signature:MF_02221 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA5UK38MF_0222115, 1, (STRLEN(?templateMotifCigarA5UK38MF_0222115) - STRLEN(REPLACE(?templateMotifCigarA5UK38MF_0222115, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionA5UK3816) + 1)), '}'), '')))), '[a-z]', '')) AS ?step127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA5UK38MF_0222117, 1, (STRLEN(?targetMotifMatchCigarA5UK38MF_0222117) - STRLEN(REPLACE(?targetMotifMatchCigarA5UK38MF_0222117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA5UK38MF_0222117, 1, (STRLEN(?targetMotifMatchCigarA5UK38MF_0222117) - STRLEN(REPLACE(?targetMotifMatchCigarA5UK38MF_0222117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), '')))), '[^-]', ''))) AS ?step228) .
BIND(((?step228 + ?targetMotifMatchRegionMatchBeginPositionMF_0222118) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA5UK38MF_0222115, 1, (STRLEN(?templateMotifCigarA5UK38MF_0222115) - STRLEN(REPLACE(?templateMotifCigarA5UK38MF_0222115, CONCAT('^(?:-*[^-]){', STR(((186 - ?templateMotifSequenceMatchBeginPositionA5UK3816) + 1)), '}'), '')))), '[a-z]', '')) AS ?step129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA5UK38MF_0222117, 1, (STRLEN(?targetMotifMatchCigarA5UK38MF_0222117) - STRLEN(REPLACE(?targetMotifMatchCigarA5UK38MF_0222117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA5UK38MF_0222117, 1, (STRLEN(?targetMotifMatchCigarA5UK38MF_0222117) - STRLEN(REPLACE(?targetMotifMatchCigarA5UK38MF_0222117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), '')))), '[^-]', ''))) AS ?step230) .
BIND(((?step230 + ?targetMotifMatchRegionMatchBeginPositionMF_0222118) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) .
FILTER ((BOUND(?thisPositionOn12) && BOUND(?thisPositionOn13))) .
BIND(URI(CONCAT(STR(?this), '#MF_02221a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
}
"xsd:string |
