| http://purl.uniprot.org/unirules/MF_03030#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:794623 up:source unirule:MF_03030 .
_:794624 up:source unirule:MF_03030 .
_:794625 up:source unirule:MF_03030 .
_:794626 up:source unirule:MF_03030 .
_:794627 up:source unirule:MF_03030 .
_:794628 up:source unirule:MF_03030 .
_:794629 up:source unirule:MF_03030 .
_:794630 up:source unirule:MF_03030 .
_:794631 up:source unirule:MF_03030 .
_:794632 up:source unirule:MF_03030 .
_:794633 up:source unirule:MF_03030 .
_:794634 up:source unirule:MF_03030 .
_:794635 up:source unirule:MF_03030 .
?this up:annotation ?annotation1 ,
?annotation3 ;
up:classifiedWith GO:0005739 ,
GO:0008297 ,
GO:0043504 ,
keyword:269 ,
keyword:378 ,
keyword:496 ,
keyword:540 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.1.-.-' ;
up:fullName 'Mitochondrial genome maintenance exonuclease 1' ;
rdf:type up:Structured_Name .
?annotation1 a up:Subcellular_Location_Annotation .
?annotation1li2 up:cellularComponent .
?annotation3 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the MGME1 family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Active_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Active_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Active_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
_:794636 a rdf:Statement ;
up:attribution _:794623 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:794637 a rdf:Statement ;
up:attribution _:794624 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:794638 a rdf:Statement ;
up:attribution _:794625 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:794639 a rdf:Statement ;
up:attribution _:794626 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:269 .
_:794640 a rdf:Statement ;
up:attribution _:794627 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:794641 a rdf:Statement ;
up:attribution _:794628 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:496 .
_:794642 a rdf:Statement ;
up:attribution _:794629 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:540 .
_:794643 a rdf:Statement ;
up:attribution _:794630 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005739 .
_:794644 a rdf:Statement ;
up:attribution _:794631 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0043504 .
_:794645 a rdf:Statement ;
up:attribution _:794632 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008297 .
_:794646 a rdf:Statement ;
up:source unirule:MF_03030 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:794647 a rdf:Statement ;
up:attribution _:794633 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:794648 a rdf:Statement ;
up:source unirule:MF_03030 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:794649 a rdf:Statement ;
up:attribution _:794634 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:794650 a rdf:Statement ;
up:source unirule:MF_03030 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:794651 a rdf:Statement ;
up:attribution _:794635 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03030
#Rule MF_03030 Created by:? on:2013-01-17 Modified by:Catherine Rivoire on:2025-09-18
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03030 .
?thisOrganism rdfs:subClassOf+ taxon:33208 .
BIND(URI(CONCAT(STR(?this), '#MF_03030a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03030a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_03030a3')) AS ?annotation3) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch30 faldo:location ?templateMotifSequenceMatchRegionQ9BQP731 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9BQP733 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9BQP7MF_0303026 .
?templateMotifSequenceMatchRegionQ9BQP731 faldo:begin ?templateMotifSequenceMatchBeginQ9BQP732 .
?templateMotifSequenceMatchBeginQ9BQP732 faldo:position ?templateMotifSequenceMatchBeginPositionQ9BQP727 ;
faldo:reference isoform:Q9BQP7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9BQP733 edam:has_input signature:MF_03030 ;
rdf:type edam:operation_0300 .
?targetMotifMatch34 faldo:location ?targetMotifMatchRegionMatch35 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0303037 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9BQP7MF_0303028 .
?targetMotifMatchRegionMatch35 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0303036 .
?targetMotifMatchRegionMatchBeginMF_0303036 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0303029 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0303037 edam:has_input signature:MF_03030 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9BQP7MF_0303026, 1, (STRLEN(?templateMotifCigarQ9BQP7MF_0303026) - STRLEN(REPLACE(?templateMotifCigarQ9BQP7MF_0303026, CONCAT('^(?:-*[^-]){', STR(((238 - ?templateMotifSequenceMatchBeginPositionQ9BQP727) + 1)), '}'), '')))), '[a-z]', '')) AS ?step138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9BQP7MF_0303028, 1, (STRLEN(?targetMotifMatchCigarQ9BQP7MF_0303028) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BQP7MF_0303028, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9BQP7MF_0303028, 1, (STRLEN(?targetMotifMatchCigarQ9BQP7MF_0303028) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BQP7MF_0303028, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), '')))), '[^-]', ''))) AS ?step239) .
BIND(((?step239 + ?targetMotifMatchRegionMatchBeginPositionMF_0303029) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03030a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionQ9BQP746 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9BQP748 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9BQP7MF_0303041 .
?templateMotifSequenceMatchRegionQ9BQP746 faldo:begin ?templateMotifSequenceMatchBeginQ9BQP747 .
?templateMotifSequenceMatchBeginQ9BQP747 faldo:position ?templateMotifSequenceMatchBeginPositionQ9BQP742 ;
faldo:reference isoform:Q9BQP7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9BQP748 edam:has_input signature:MF_03030 ;
rdf:type edam:operation_0300 .
?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0303052 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9BQP7MF_0303043 .
?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0303051 .
?targetMotifMatchRegionMatchBeginMF_0303051 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0303044 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0303052 edam:has_input signature:MF_03030 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9BQP7MF_0303041, 1, (STRLEN(?templateMotifCigarQ9BQP7MF_0303041) - STRLEN(REPLACE(?templateMotifCigarQ9BQP7MF_0303041, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionQ9BQP742) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9BQP7MF_0303043, 1, (STRLEN(?targetMotifMatchCigarQ9BQP7MF_0303043) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BQP7MF_0303043, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9BQP7MF_0303043, 1, (STRLEN(?targetMotifMatchCigarQ9BQP7MF_0303043) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BQP7MF_0303043, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0303044) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03030a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch60 faldo:location ?templateMotifSequenceMatchRegionQ9BQP761 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9BQP763 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9BQP7MF_0303056 .
?templateMotifSequenceMatchRegionQ9BQP761 faldo:begin ?templateMotifSequenceMatchBeginQ9BQP762 .
?templateMotifSequenceMatchBeginQ9BQP762 faldo:position ?templateMotifSequenceMatchBeginPositionQ9BQP757 ;
faldo:reference isoform:Q9BQP7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9BQP763 edam:has_input signature:MF_03030 ;
rdf:type edam:operation_0300 .
?targetMotifMatch64 faldo:location ?targetMotifMatchRegionMatch65 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0303067 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9BQP7MF_0303058 .
?targetMotifMatchRegionMatch65 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0303066 .
?targetMotifMatchRegionMatchBeginMF_0303066 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0303059 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0303067 edam:has_input signature:MF_03030 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9BQP7MF_0303056, 1, (STRLEN(?templateMotifCigarQ9BQP7MF_0303056) - STRLEN(REPLACE(?templateMotifCigarQ9BQP7MF_0303056, CONCAT('^(?:-*[^-]){', STR(((253 - ?templateMotifSequenceMatchBeginPositionQ9BQP757) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9BQP7MF_0303058, 1, (STRLEN(?targetMotifMatchCigarQ9BQP7MF_0303058) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BQP7MF_0303058, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9BQP7MF_0303058, 1, (STRLEN(?targetMotifMatchCigarQ9BQP7MF_0303058) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BQP7MF_0303058, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) .
BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0303059) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03030a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?case4) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case5) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:7742 .
})) .
BIND(?this AS ?case6) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case7) .
}
}
"xsd:string |
