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http://purl.uniprot.org/unirules/MF_03047#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_03047#construct-template-5
http://purl.uniprot.org/unirules/MF_03047#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_03047#construct-template-58
http://purl.uniprot.org/unirules/MF_03047#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_03047#construct-template-32
http://purl.uniprot.org/unirules/MF_03047#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_03047#construct-template-73
http://purl.uniprot.org/unirules/MF_03047#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_03047#construct-template-30
http://purl.uniprot.org/unirules/MF_03047#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_03047#construct-template-71
http://purl.uniprot.org/unirules/MF_03047#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_03047#construct-template-75
http://purl.uniprot.org/unirules/MF_03047#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_03047#construct-template-78
http://purl.uniprot.org/unirules/MF_03047#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_03047#construct-template-76
http://purl.uniprot.org/unirules/MF_03047#constructhttp://www.w3.org/ns/shacl#prefixeshttp://purl.uniprot.org/unirules/
http://purl.uniprot.org/unirules/MF_03047#constructhttp://spinrdf.org/sp#wherehttp://purl.uniprot.org/unirules/MF_03047#construct-where-list-0
http://purl.uniprot.org/unirules/MF_03047#constructhttp://spinrdf.org/sp#templateshttp://purl.uniprot.org/unirules/MF_03047#construct-template-list-0
http://purl.uniprot.org/unirules/MF_03047#constructhttp://www.w3.org/ns/shacl#construct"CONSTRUCT { _:801569 up:source unirule:MF_03047 . _:801570 up:source unirule:MF_03047 . _:801571 up:source unirule:MF_03047 . _:801572 up:source unirule:MF_03047 . _:801573 up:source unirule:MF_03047 . _:801574 up:source unirule:MF_03047 . _:801575 up:source unirule:MF_03047 . _:801576 up:source unirule:MF_03047 . _:801577 up:source unirule:MF_03047 . _:801578 up:source unirule:MF_03047 . _:801579 up:source unirule:MF_03047 . _:801580 up:source unirule:MF_03047 . _:801581 up:source unirule:MF_03047 . _:801582 up:source unirule:MF_03047 . _:801583 up:source unirule:MF_03047 . _:801584 up:source unirule:MF_03047 . _:801585 up:source unirule:MF_03047 . _:801586 up:source unirule:MF_03047 . _:801587 up:source unirule:MF_03047 . _:801588 up:source unirule:MF_03047 . _:801589 up:source unirule:MF_03047 . _:801590 up:source unirule:MF_03047 . _:801591 up:source unirule:MF_03047 . ?this up:annotation ?annotation0 , ?annotation1 ; up:classifiedWith GO:0000124 , GO:0003713 , GO:0005634 , GO:0008270 , GO:0045893 , GO:0071819 , keyword:10 , keyword:156 , keyword:479 , keyword:539 , keyword:804 , keyword:805 , keyword:862 , keyword:863 . ?annotation0 a up:Domain_Annotation ; rdfs:comment "The long N-terminal helix forms part of the 'assembly lobe' of the SAGA deubiquitination module." . ?annotation1 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the SGF11 family.' . ?case6 up:classifiedWith GO:0005643 , GO:0005737 , GO:0006406 , keyword:509 , keyword:813 , keyword:963 . ?pfs10 up:annotation ?annotation11 . ?annotation11 faldo:begin ?pfsb12 ; faldo:end ?pfse13 ; rdf:type up:Zinc_Finger_Annotation ; rdfs:comment 'SGF11-type' . ?pfsb12 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?pfse13 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . _:801592 a rdf:Statement ; up:attribution _:801569 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:801593 a rdf:Statement ; up:attribution _:801570 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:801594 a rdf:Statement ; up:attribution _:801571 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:10 . _:801595 a rdf:Statement ; up:attribution _:801572 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:156 . _:801596 a rdf:Statement ; up:attribution _:801573 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:801597 a rdf:Statement ; up:attribution _:801574 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:539 . _:801598 a rdf:Statement ; up:attribution _:801575 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:804 . _:801599 a rdf:Statement ; up:attribution _:801576 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:805 . _:801600 a rdf:Statement ; up:attribution _:801577 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:801601 a rdf:Statement ; up:attribution _:801578 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:863 . _:801602 a rdf:Statement ; up:attribution _:801579 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003713 . _:801603 a rdf:Statement ; up:attribution _:801580 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008270 . _:801604 a rdf:Statement ; up:attribution _:801581 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0045893 . _:801605 a rdf:Statement ; up:attribution _:801582 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000124 . _:801606 a rdf:Statement ; up:attribution _:801583 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0071819 . _:801607 a rdf:Statement ; up:attribution _:801584 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005634 . _:801608 a rdf:Statement ; up:attribution _:801585 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:801609 a rdf:Statement ; up:attribution _:801586 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object keyword:509 . _:801610 a rdf:Statement ; up:attribution _:801587 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object keyword:813 . _:801611 a rdf:Statement ; up:attribution _:801588 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:801612 a rdf:Statement ; up:attribution _:801589 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object GO:0006406 . _:801613 a rdf:Statement ; up:attribution _:801590 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005643 . _:801614 a rdf:Statement ; up:source unirule:MF_03047 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:801615 a rdf:Statement ; up:attribution _:801591 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_03047 #Rule MF_03047 Created by:? on:2013-08-13 Modified by:Catherine Rivoire on:2025-01-14 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_03047 . ?thisOrganism rdfs:subClassOf+ taxon:2759 . BIND(URI(CONCAT(STR(?this), '#MF_03047a0')) AS ?annotation0) . BIND(URI(CONCAT(STR(?this), '#MF_03047a1')) AS ?annotation1) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch20 faldo:location ?templateMotifSequenceMatchRegionQ0306721 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0306723 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ03067MF_0304716 . ?templateMotifSequenceMatchRegionQ0306721 faldo:begin ?templateMotifSequenceMatchBeginQ0306722 . ?templateMotifSequenceMatchBeginQ0306722 faldo:position ?templateMotifSequenceMatchBeginPositionQ0306717 ; faldo:reference isoform:Q03067-1 . ?templateMotifSequenceProfileAlignmentOperationQ0306723 edam:has_input signature:MF_03047 ; rdf:type edam:operation_0300 . ?targetMotifMatch24 faldo:location ?targetMotifMatchRegionMatch25 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0304727 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ03067MF_0304718 . ?targetMotifMatchRegionMatch25 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0304726 . ?targetMotifMatchRegionMatchBeginMF_0304726 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0304719 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0304727 edam:has_input signature:MF_03047 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ03067MF_0304716, 1, (STRLEN(?templateMotifCigarQ03067MF_0304716) - STRLEN(REPLACE(?templateMotifCigarQ03067MF_0304716, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionQ0306717) + 1)), '}'), '')))), '[a-z]', '')) AS ?step128) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ03067MF_0304718, 1, (STRLEN(?targetMotifMatchCigarQ03067MF_0304718) - STRLEN(REPLACE(?targetMotifMatchCigarQ03067MF_0304718, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ03067MF_0304718, 1, (STRLEN(?targetMotifMatchCigarQ03067MF_0304718) - STRLEN(REPLACE(?targetMotifMatchCigarQ03067MF_0304718, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), '')))), '[^-]', ''))) AS ?step229) . BIND(((?step229 + ?targetMotifMatchRegionMatchBeginPositionMF_0304719) - 1) AS ?thisPositionOn14) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ03067MF_0304716, 1, (STRLEN(?templateMotifCigarQ03067MF_0304716) - STRLEN(REPLACE(?templateMotifCigarQ03067MF_0304716, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionQ0306717) + 1)), '}'), '')))), '[a-z]', '')) AS ?step130) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ03067MF_0304718, 1, (STRLEN(?targetMotifMatchCigarQ03067MF_0304718) - STRLEN(REPLACE(?targetMotifMatchCigarQ03067MF_0304718, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ03067MF_0304718, 1, (STRLEN(?targetMotifMatchCigarQ03067MF_0304718) - STRLEN(REPLACE(?targetMotifMatchCigarQ03067MF_0304718, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), '')))), '[^-]', ''))) AS ?step231) . BIND(((?step231 + ?targetMotifMatchRegionMatchBeginPositionMF_0304719) - 1) AS ?thisPositionOn15) . BIND(?this AS ?pfs1t32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) . FILTER (REGEX('[YCIFL][ARNDCQEGHILKMFPSTWYVBZJUOX]C[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)C[ARNDCQEGHILKMFPSTWYVBZJUOX]{11)H[ARNDCQEGHILKMFPSTWYVBZJUOX]{3)C', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) . BIND(URI(CONCAT(STR(?this), '#MF_03047a11')) AS ?annotation11) . BIND(?this AS ?pfs10) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4751 . BIND(?this AS ?case2) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:50557 . BIND(?this AS ?case3) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(?this AS ?case4) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7742 . BIND(?this AS ?case5) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7214 . BIND(?this AS ?case6) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:7214 . })) . BIND(?this AS ?case7) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon33 {taxon:4751 taxon:7742} ?thisOrganism rdfs:subClassOf+ ?supertaxon33 . })) . BIND(?this AS ?case8) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon34 {taxon:4751 taxon:7214 taxon:40674} ?thisOrganism rdfs:subClassOf+ ?supertaxon34 . })) . BIND(?this AS ?case9) . } } "xsd:string
http://purl.uniprot.org/unirules/MF_03047http://www.w3.org/ns/shacl#rulehttp://purl.uniprot.org/unirules/MF_03047#construct
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