| http://purl.uniprot.org/unirules/MF_04011#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:898232 up:source unirule:MF_04011 .
_:898233 up:source unirule:MF_04011 .
_:898234 up:source unirule:MF_04011 .
_:898235 up:source unirule:MF_04011 .
_:898236 up:source unirule:MF_04011 .
_:898237 up:source unirule:MF_04011 .
_:898238 up:source unirule:MF_04011 .
_:898239 up:source unirule:MF_04011 .
_:898240 up:source unirule:MF_04011 .
_:898241 up:source unirule:MF_04011 .
_:898242 up:source unirule:MF_04011 .
_:898243 up:source unirule:MF_04011 .
_:898244 up:source unirule:MF_04011 .
_:898245 up:source unirule:MF_04011 .
_:898246 up:source unirule:MF_04011 .
_:898247 up:source unirule:MF_04011 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0039686 ,
GO:0042025 ,
keyword:1048 ,
keyword:235 ,
keyword:479 ,
keyword:808 ,
keyword:862 ,
keyword:863 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.7.-' ;
up:fullName 'DNA primase' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Essential component of the helicase/primase complex. Unwinds the DNA at the replication forks and generates single-stranded DNA for both leading and lagging strand synthesis. The primase initiates primer synthesis and thereby produces large amount of short RNA primers on the lagging strand that the polymerase elongates using dNTPs.' .
?annotation2 a up:Subunit_Annotation ;
rdfs:comment 'Associates with the helicase and the primase-associated factor to form the helicase-primase factor.' .
?annotation3 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Requires the presence of the primase associated factor to properly localize in the host cell nucleus' .
?annotation3li4 up:cellularComponent .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the herpesviridae DNA primase family.' .
?pfs6 up:annotation ?annotation7 .
?annotation7 faldo:begin ?pfsb8 ;
faldo:end ?pfse9 ;
rdf:type up:Zinc_Finger_Annotation ;
rdfs:comment 'CHC2-type' .
?pfsb8 faldo:position ?thisPositionOn10 ;
rdf:type faldo:ExactPosition .
?pfse9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Essential for primase activity' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Essential for primase activity' .
?pfsb20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
_:898248 a rdf:Statement ;
up:attribution _:898232 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:898249 a rdf:Statement ;
up:attribution _:898233 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:898250 a rdf:Statement ;
up:attribution _:898234 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:898251 a rdf:Statement ;
up:attribution _:898235 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:898252 a rdf:Statement ;
up:attribution _:898236 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:898253 a rdf:Statement ;
up:attribution _:898237 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:235 .
_:898254 a rdf:Statement ;
up:attribution _:898238 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1048 .
_:898255 a rdf:Statement ;
up:attribution _:898239 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:898256 a rdf:Statement ;
up:attribution _:898240 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:898257 a rdf:Statement ;
up:attribution _:898241 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:898258 a rdf:Statement ;
up:attribution _:898242 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:863 .
_:898259 a rdf:Statement ;
up:attribution _:898243 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042025 .
_:898260 a rdf:Statement ;
up:attribution _:898244 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039686 .
_:898261 a rdf:Statement ;
up:source unirule:MF_04011 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:898262 a rdf:Statement ;
up:attribution _:898245 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:898263 a rdf:Statement ;
up:source unirule:MF_04011 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:898264 a rdf:Statement ;
up:attribution _:898246 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:898265 a rdf:Statement ;
up:source unirule:MF_04011 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:898266 a rdf:Statement ;
up:attribution _:898247 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04011
#Rule MF_04011 Created by:? on:2016-03-03 Modified by:Catherine Rivoire on:2025-03-21
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04011 .
?thisOrganism rdfs:subClassOf+ taxon:10292 .
BIND(URI(CONCAT(STR(?this), '#MF_04011a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04011a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_04011a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04011a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04011a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch28 faldo:location ?templateMotifSequenceMatchRegionP1023629 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1023631 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10236MF_0401124 .
?templateMotifSequenceMatchRegionP1023629 faldo:begin ?templateMotifSequenceMatchBeginP1023630 .
?templateMotifSequenceMatchBeginP1023630 faldo:position ?templateMotifSequenceMatchBeginPositionP1023625 ;
faldo:reference isoform:P10236-1 .
?templateMotifSequenceProfileAlignmentOperationP1023631 edam:has_input signature:MF_04011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch32 faldo:location ?targetMotifMatchRegionMatch33 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0401135 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10236MF_0401126 .
?targetMotifMatchRegionMatch33 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0401134 .
?targetMotifMatchRegionMatchBeginMF_0401134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0401127 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0401135 edam:has_input signature:MF_04011 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10236MF_0401124, 1, (STRLEN(?templateMotifCigarP10236MF_0401124) - STRLEN(REPLACE(?templateMotifCigarP10236MF_0401124, CONCAT('^(?:-*[^-]){', STR(((988 - ?templateMotifSequenceMatchBeginPositionP1023625) + 1)), '}'), '')))), '[a-z]', '')) AS ?step136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10236MF_0401126, 1, (STRLEN(?targetMotifMatchCigarP10236MF_0401126) - STRLEN(REPLACE(?targetMotifMatchCigarP10236MF_0401126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10236MF_0401126, 1, (STRLEN(?targetMotifMatchCigarP10236MF_0401126) - STRLEN(REPLACE(?targetMotifMatchCigarP10236MF_0401126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step136), '}'), '')))), '[^-]', ''))) AS ?step237) .
BIND(((?step237 + ?targetMotifMatchRegionMatchBeginPositionMF_0401127) - 1) AS ?thisPositionOn10) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10236MF_0401124, 1, (STRLEN(?templateMotifCigarP10236MF_0401124) - STRLEN(REPLACE(?templateMotifCigarP10236MF_0401124, CONCAT('^(?:-*[^-]){', STR(((1028 - ?templateMotifSequenceMatchBeginPositionP1023625) + 1)), '}'), '')))), '[a-z]', '')) AS ?step138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10236MF_0401126, 1, (STRLEN(?targetMotifMatchCigarP10236MF_0401126) - STRLEN(REPLACE(?targetMotifMatchCigarP10236MF_0401126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10236MF_0401126, 1, (STRLEN(?targetMotifMatchCigarP10236MF_0401126) - STRLEN(REPLACE(?targetMotifMatchCigarP10236MF_0401126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), '')))), '[^-]', ''))) AS ?step239) .
BIND(((?step239 + ?targetMotifMatchRegionMatchBeginPositionMF_0401127) - 1) AS ?thisPositionOn11) .
BIND(?this AS ?pfs1t40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb8) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse9) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]{4)H[ARNDCQEGHILKMFPSTWYVBZJUOX]*C[ARNDCQEGHILKMFPSTWYVBZJUOX]{4)C', SUBSTR(?thisSequenceValue, ?thisPositionOn10, (?thisPositionOn11 - ?thisPositionOn10)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04011a7')) AS ?annotation7) .
BIND(?this AS ?pfs6) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionP1023646 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1023648 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10236MF_0401141 .
?templateMotifSequenceMatchRegionP1023646 faldo:begin ?templateMotifSequenceMatchBeginP1023647 .
?templateMotifSequenceMatchBeginP1023647 faldo:position ?templateMotifSequenceMatchBeginPositionP1023642 ;
faldo:reference isoform:P10236-1 .
?templateMotifSequenceProfileAlignmentOperationP1023648 edam:has_input signature:MF_04011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0401152 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10236MF_0401143 .
?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0401151 .
?targetMotifMatchRegionMatchBeginMF_0401151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0401144 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0401152 edam:has_input signature:MF_04011 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10236MF_0401141, 1, (STRLEN(?templateMotifCigarP10236MF_0401141) - STRLEN(REPLACE(?templateMotifCigarP10236MF_0401141, CONCAT('^(?:-*[^-]){', STR(((628 - ?templateMotifSequenceMatchBeginPositionP1023642) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10236MF_0401143, 1, (STRLEN(?targetMotifMatchCigarP10236MF_0401143) - STRLEN(REPLACE(?targetMotifMatchCigarP10236MF_0401143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10236MF_0401143, 1, (STRLEN(?targetMotifMatchCigarP10236MF_0401143) - STRLEN(REPLACE(?targetMotifMatchCigarP10236MF_0401143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0401144) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04011a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch60 faldo:location ?templateMotifSequenceMatchRegionP1023661 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1023663 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10236MF_0401156 .
?templateMotifSequenceMatchRegionP1023661 faldo:begin ?templateMotifSequenceMatchBeginP1023662 .
?templateMotifSequenceMatchBeginP1023662 faldo:position ?templateMotifSequenceMatchBeginPositionP1023657 ;
faldo:reference isoform:P10236-1 .
?templateMotifSequenceProfileAlignmentOperationP1023663 edam:has_input signature:MF_04011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch64 faldo:location ?targetMotifMatchRegionMatch65 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0401167 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10236MF_0401158 .
?targetMotifMatchRegionMatch65 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0401166 .
?targetMotifMatchRegionMatchBeginMF_0401166 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0401159 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0401167 edam:has_input signature:MF_04011 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10236MF_0401156, 1, (STRLEN(?templateMotifCigarP10236MF_0401156) - STRLEN(REPLACE(?templateMotifCigarP10236MF_0401156, CONCAT('^(?:-*[^-]){', STR(((630 - ?templateMotifSequenceMatchBeginPositionP1023657) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10236MF_0401158, 1, (STRLEN(?targetMotifMatchCigarP10236MF_0401158) - STRLEN(REPLACE(?targetMotifMatchCigarP10236MF_0401158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10236MF_0401158, 1, (STRLEN(?targetMotifMatchCigarP10236MF_0401158) - STRLEN(REPLACE(?targetMotifMatchCigarP10236MF_0401158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) .
BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0401159) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04011a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
}
"xsd:string |
