| http://purl.uniprot.org/unirules/MF_04012#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:898559 up:source unirule:MF_04012 .
_:898560 up:source unirule:MF_04012 .
_:898561 up:source unirule:MF_04012 .
_:898562 up:source unirule:MF_04012 .
_:898563 up:source unirule:MF_04012 .
_:898564 up:source unirule:MF_04012 .
_:898565 up:source unirule:MF_04012 .
_:898566 up:source unirule:MF_04012 .
_:898567 up:source unirule:MF_04012 .
_:898568 up:source unirule:MF_04012 .
_:898569 up:source unirule:MF_04012 .
_:898570 up:source unirule:MF_04012 .
_:898571 up:source unirule:MF_04012 .
_:898572 up:source unirule:MF_04012 .
_:898573 up:source unirule:MF_04012 .
_:898574 up:source unirule:MF_04012 .
_:898575 up:source unirule:MF_04012 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation3 ,
?annotation6 ;
up:classifiedWith GO:0019076 ,
GO:0042025 ,
GO:0044423 ,
GO:0051276 ,
keyword:1048 ,
keyword:1188 ,
keyword:231 ,
keyword:946 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Portal protein' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Forms a portal in the viral capsid through which viral DNA is translocated during DNA packaging. Assembles as a dodecamer at a single fivefold axe of the T=16 icosahedric capsid. Binds to the molecular motor that translocates the viral DNA, termed terminase.' .
?annotation2 a up:Subunit_Annotation ;
rdfs:comment 'Homododecamerizes. Interacts with terminase subunits TRM1 and TRM3.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation3li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the herpesviridae portal protein family.' .
?case7 up:classifiedWith keyword:1015 .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Disulfide_Bond_Annotation ;
rdfs:comment 'Interchain' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Disulfide_Bond_Annotation ;
rdfs:comment 'Interchain' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Putative leucine zipper motif' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
_:898576 a rdf:Statement ;
up:attribution _:898559 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:898577 a rdf:Statement ;
up:attribution _:898560 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:898578 a rdf:Statement ;
up:attribution _:898561 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:898579 a rdf:Statement ;
up:attribution _:898562 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:898580 a rdf:Statement ;
up:attribution _:898563 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:898581 a rdf:Statement ;
up:attribution _:898564 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1048 .
_:898582 a rdf:Statement ;
up:attribution _:898565 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:231 .
_:898583 a rdf:Statement ;
up:attribution _:898566 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:898584 a rdf:Statement ;
up:attribution _:898567 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1188 .
_:898585 a rdf:Statement ;
up:attribution _:898568 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042025 .
_:898586 a rdf:Statement ;
up:attribution _:898569 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044423 .
_:898587 a rdf:Statement ;
up:attribution _:898570 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051276 .
_:898588 a rdf:Statement ;
up:attribution _:898571 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019076 .
_:898589 a rdf:Statement ;
up:attribution _:898572 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:898590 a rdf:Statement ;
up:source unirule:MF_04012 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:898591 a rdf:Statement ;
up:attribution _:898573 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:898592 a rdf:Statement ;
up:source unirule:MF_04012 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:898593 a rdf:Statement ;
up:attribution _:898574 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:898594 a rdf:Statement ;
up:source unirule:MF_04012 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:898595 a rdf:Statement ;
up:attribution _:898575 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04012
#Rule MF_04012 Created by:? on:2016-03-14 Modified by:Catherine Rivoire on:2022-05-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04012 .
?thisOrganism rdfs:subClassOf+ taxon:10292 .
BIND(URI(CONCAT(STR(?this), '#MF_04012a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04012a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_04012a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04012a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04012a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch30 faldo:location ?templateMotifSequenceMatchRegionP1019031 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1019033 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10190MF_0401226 .
?templateMotifSequenceMatchRegionP1019031 faldo:begin ?templateMotifSequenceMatchBeginP1019032 .
?templateMotifSequenceMatchBeginP1019032 faldo:position ?templateMotifSequenceMatchBeginPositionP1019027 ;
faldo:reference isoform:P10190-1 .
?templateMotifSequenceProfileAlignmentOperationP1019033 edam:has_input signature:MF_04012 ;
rdf:type edam:operation_0300 .
?targetMotifMatch34 faldo:location ?targetMotifMatchRegionMatch35 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0401237 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10190MF_0401228 .
?targetMotifMatchRegionMatch35 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0401236 .
?targetMotifMatchRegionMatchBeginMF_0401236 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0401229 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0401237 edam:has_input signature:MF_04012 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagDis) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:10293 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10190MF_0401226, 1, (STRLEN(?templateMotifCigarP10190MF_0401226) - STRLEN(REPLACE(?templateMotifCigarP10190MF_0401226, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionP1019027) + 1)), '}'), '')))), '[a-z]', '')) AS ?step138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10190MF_0401228, 1, (STRLEN(?targetMotifMatchCigarP10190MF_0401228) - STRLEN(REPLACE(?targetMotifMatchCigarP10190MF_0401228, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10190MF_0401228, 1, (STRLEN(?targetMotifMatchCigarP10190MF_0401228) - STRLEN(REPLACE(?targetMotifMatchCigarP10190MF_0401228, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), '')))), '[^-]', ''))) AS ?step239) .
BIND(((?step239 + ?targetMotifMatchRegionMatchBeginPositionMF_0401229) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04012a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionP1019046 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1019048 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10190MF_0401241 .
?templateMotifSequenceMatchRegionP1019046 faldo:begin ?templateMotifSequenceMatchBeginP1019047 .
?templateMotifSequenceMatchBeginP1019047 faldo:position ?templateMotifSequenceMatchBeginPositionP1019042 ;
faldo:reference isoform:P10190-1 .
?templateMotifSequenceProfileAlignmentOperationP1019048 edam:has_input signature:MF_04012 ;
rdf:type edam:operation_0300 .
?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0401252 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10190MF_0401243 .
?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0401251 .
?targetMotifMatchRegionMatchBeginMF_0401251 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0401244 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0401252 edam:has_input signature:MF_04012 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagDis) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:10293 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10190MF_0401241, 1, (STRLEN(?templateMotifCigarP10190MF_0401241) - STRLEN(REPLACE(?templateMotifCigarP10190MF_0401241, CONCAT('^(?:-*[^-]){', STR(((254 - ?templateMotifSequenceMatchBeginPositionP1019042) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10190MF_0401243, 1, (STRLEN(?targetMotifMatchCigarP10190MF_0401243) - STRLEN(REPLACE(?targetMotifMatchCigarP10190MF_0401243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10190MF_0401243, 1, (STRLEN(?targetMotifMatchCigarP10190MF_0401243) - STRLEN(REPLACE(?targetMotifMatchCigarP10190MF_0401243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0401244) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04012a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch60 faldo:location ?templateMotifSequenceMatchRegionP1019061 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1019063 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10190MF_0401256 .
?templateMotifSequenceMatchRegionP1019061 faldo:begin ?templateMotifSequenceMatchBeginP1019062 .
?templateMotifSequenceMatchBeginP1019062 faldo:position ?templateMotifSequenceMatchBeginPositionP1019057 ;
faldo:reference isoform:P10190-1 .
?templateMotifSequenceProfileAlignmentOperationP1019063 edam:has_input signature:MF_04012 ;
rdf:type edam:operation_0300 .
?targetMotifMatch64 faldo:location ?targetMotifMatchRegionMatch65 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0401267 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10190MF_0401258 .
?targetMotifMatchRegionMatch65 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0401266 .
?targetMotifMatchRegionMatchBeginMF_0401266 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0401259 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0401267 edam:has_input signature:MF_04012 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:10293 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10190MF_0401256, 1, (STRLEN(?templateMotifCigarP10190MF_0401256) - STRLEN(REPLACE(?templateMotifCigarP10190MF_0401256, CONCAT('^(?:-*[^-]){', STR(((422 - ?templateMotifSequenceMatchBeginPositionP1019057) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10190MF_0401258, 1, (STRLEN(?targetMotifMatchCigarP10190MF_0401258) - STRLEN(REPLACE(?targetMotifMatchCigarP10190MF_0401258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10190MF_0401258, 1, (STRLEN(?targetMotifMatchCigarP10190MF_0401258) - STRLEN(REPLACE(?targetMotifMatchCigarP10190MF_0401258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) .
BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0401259) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10190MF_0401256, 1, (STRLEN(?templateMotifCigarP10190MF_0401256) - STRLEN(REPLACE(?templateMotifCigarP10190MF_0401256, CONCAT('^(?:-*[^-]){', STR(((443 - ?templateMotifSequenceMatchBeginPositionP1019057) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10190MF_0401258, 1, (STRLEN(?targetMotifMatchCigarP10190MF_0401258) - STRLEN(REPLACE(?targetMotifMatchCigarP10190MF_0401258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10190MF_0401258, 1, (STRLEN(?targetMotifMatchCigarP10190MF_0401258) - STRLEN(REPLACE(?targetMotifMatchCigarP10190MF_0401258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0401259) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs2t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER (REGEX('[LV][ARNDCQEGHILKMFPSTWYVBZJUOX]{6)L[ARNDCQEGHILKMFPSTWYVBZJUOX]{6)L[ARNDCQEGHILKMFPSTWYVBZJUOX]{6)L', SUBSTR(?thisSequenceValue, ?thisPositionOn24, (?thisPositionOn25 - ?thisPositionOn24)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04012a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag73) .
}
BIND(IF(BOUND(?tagDis), ?caseWithTag73, ?UNBOUND_VARIABLE) AS ?case7) .
}
"xsd:string |
