| http://purl.uniprot.org/unirules/MF_04025#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04025#construct-template-78 |
| http://purl.uniprot.org/unirules/MF_04025#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04025#construct-template-77 |
| http://purl.uniprot.org/unirules/MF_04025#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04025#construct-template-58 |
| http://purl.uniprot.org/unirules/MF_04025#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04025#construct-template-82 |
| http://purl.uniprot.org/unirules/MF_04025#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04025#construct-template-80 |
| http://purl.uniprot.org/unirules/MF_04025#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04025#construct-template-67 |
| http://purl.uniprot.org/unirules/MF_04025#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04025#construct-template-63 |
| http://purl.uniprot.org/unirules/MF_04025#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04025#construct-template-62 |
| http://purl.uniprot.org/unirules/MF_04025#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04025#construct-template-69 |
| http://purl.uniprot.org/unirules/MF_04025#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04025#construct-template-65 |
| http://purl.uniprot.org/unirules/MF_04025#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_04025#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_04025#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_04025#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_04025#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_04025#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:902293 up:source unirule:MF_04025 .
_:902294 up:source unirule:MF_04025 .
_:902295 up:source unirule:MF_04025 .
_:902296 up:source unirule:MF_04025 .
_:902297 up:source unirule:MF_04025 .
_:902298 up:source unirule:MF_04025 .
_:902299 up:source unirule:MF_04025 .
_:902300 up:source unirule:MF_04025 .
_:902301 up:source unirule:MF_04025 .
_:902302 up:source unirule:MF_04025 .
_:902303 up:source unirule:MF_04025 .
_:902304 up:source unirule:MF_04025 .
_:902305 up:source unirule:MF_04025 .
_:902306 up:source unirule:MF_04025 .
_:902307 up:source unirule:MF_04025 .
_:902308 up:source unirule:MF_04025 .
_:902309 up:source unirule:MF_04025 .
_:902310 up:source unirule:MF_04025 .
_:902311 up:source unirule:MF_04025 .
_:902312 up:source unirule:MF_04025 .
_:902313 up:source unirule:MF_04025 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation7 ;
up:classifiedWith GO:0019028 ,
GO:0019072 ,
GO:0019076 ,
GO:0042025 ,
GO:0046718 ,
GO:0075732 ,
keyword:1048 ,
keyword:1160 ,
keyword:1163 ,
keyword:1188 ,
keyword:167 ,
keyword:231 ,
keyword:945 ,
keyword:946 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Capsid vertex component 2' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'CVC2' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Capsid vertex-specific component that plays a role during viral DNA encapsidation, assuring correct genome cleavage and presumably stabilizing capsids that contain full-length viral genomes. Participates in the interaction between the capsid and the tegument through interaction with the large tegument protein/LTP.' .
?annotation3 a up:Subunit_Annotation ;
rdfs:comment 'Heterodimerizes with CVC1. Interacts with major capsid protein/MCP and triplex capsid protein 1/TRX1 at the pentamer vertices. Interacts with the large tegument protein/LTP.' .
?annotation4 a up:Subcellular_Location_Annotation .
?annotation4li5 up:cellularComponent .
?annotation4li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the herpesviridae CVC2 protein family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with major capsid protein/MCP' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
_:902314 a rdf:Statement ;
up:attribution _:902293 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:902315 a rdf:Statement ;
up:attribution _:902294 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:902316 a rdf:Statement ;
up:attribution _:902295 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:902317 a rdf:Statement ;
up:attribution _:902296 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:902318 a rdf:Statement ;
up:attribution _:902297 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:902319 a rdf:Statement ;
up:attribution _:902298 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:902320 a rdf:Statement ;
up:attribution _:902299 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:167 .
_:902321 a rdf:Statement ;
up:attribution _:902300 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1048 .
_:902322 a rdf:Statement ;
up:attribution _:902301 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:945 .
_:902323 a rdf:Statement ;
up:attribution _:902302 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:231 .
_:902324 a rdf:Statement ;
up:attribution _:902303 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1163 .
_:902325 a rdf:Statement ;
up:attribution _:902304 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:902326 a rdf:Statement ;
up:attribution _:902305 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1160 .
_:902327 a rdf:Statement ;
up:attribution _:902306 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1188 .
_:902328 a rdf:Statement ;
up:attribution _:902307 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042025 .
_:902329 a rdf:Statement ;
up:attribution _:902308 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019028 .
_:902330 a rdf:Statement ;
up:attribution _:902309 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046718 .
_:902331 a rdf:Statement ;
up:attribution _:902310 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019072 .
_:902332 a rdf:Statement ;
up:attribution _:902311 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0075732 .
_:902333 a rdf:Statement ;
up:attribution _:902312 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019076 .
_:902334 a rdf:Statement ;
up:source unirule:MF_04025 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:902335 a rdf:Statement ;
up:attribution _:902313 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04025
#Rule MF_04025 Created by:? on:2016-04-22 Modified by:Catherine Rivoire on:2024-03-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04025 .
?thisOrganism rdfs:subClassOf+ taxon:10292 .
BIND(URI(CONCAT(STR(?this), '#MF_04025a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04025a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04025a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04025a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04025a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch18 faldo:location ?templateMotifSequenceMatchRegionP1020919 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1020921 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10209MF_0402514 .
?templateMotifSequenceMatchRegionP1020919 faldo:begin ?templateMotifSequenceMatchBeginP1020920 .
?templateMotifSequenceMatchBeginP1020920 faldo:position ?templateMotifSequenceMatchBeginPositionP1020915 ;
faldo:reference isoform:P10209-1 .
?templateMotifSequenceProfileAlignmentOperationP1020921 edam:has_input signature:MF_04025 ;
rdf:type edam:operation_0300 .
?targetMotifMatch22 faldo:location ?targetMotifMatchRegionMatch23 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0402525 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10209MF_0402516 .
?targetMotifMatchRegionMatch23 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0402524 .
?targetMotifMatchRegionMatchBeginMF_0402524 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0402517 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0402525 edam:has_input signature:MF_04025 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10209MF_0402514, 1, (STRLEN(?templateMotifCigarP10209MF_0402514) - STRLEN(REPLACE(?templateMotifCigarP10209MF_0402514, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionP1020915) + 1)), '}'), '')))), '[a-z]', '')) AS ?step126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10209MF_0402516, 1, (STRLEN(?targetMotifMatchCigarP10209MF_0402516) - STRLEN(REPLACE(?targetMotifMatchCigarP10209MF_0402516, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10209MF_0402516, 1, (STRLEN(?targetMotifMatchCigarP10209MF_0402516) - STRLEN(REPLACE(?targetMotifMatchCigarP10209MF_0402516, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), '')))), '[^-]', ''))) AS ?step227) .
BIND(((?step227 + ?targetMotifMatchRegionMatchBeginPositionMF_0402517) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((BOUND(?thisPositionOn12) && BOUND(?thisPositionOn13))) .
BIND(URI(CONCAT(STR(?this), '#MF_04025a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_04025 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_04025#construct |
