| http://purl.uniprot.org/unirules/MF_04030#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:904537 up:source unirule:MF_04030 .
_:904538 up:source unirule:MF_04030 .
_:904539 up:source unirule:MF_04030 .
_:904540 up:source unirule:MF_04030 .
_:904541 up:source unirule:MF_04030 .
_:904542 up:source unirule:MF_04030 .
_:904543 up:source unirule:MF_04030 .
_:904544 up:source unirule:MF_04030 .
_:904545 up:source unirule:MF_04030 .
_:904546 up:source unirule:MF_04030 .
_:904547 up:source unirule:MF_04030 .
_:904548 up:source unirule:MF_04030 .
_:904549 up:source unirule:MF_04030 .
_:904550 up:source unirule:MF_04030 .
_:904551 up:source unirule:MF_04030 .
_:904552 up:source unirule:MF_04030 .
_:904553 up:source unirule:MF_04030 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0004386 ,
GO:0005524 ,
GO:0039686 ,
GO:0042025 ,
keyword:1048 ,
keyword:235 ,
keyword:347 ,
keyword:378 ,
keyword:547 ,
keyword:67 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.6.4.-' ;
up:fullName 'DNA replication helicase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'HELI' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Component of the helicase/primase complex. Unwinds the DNA at the replication forks and generates single-stranded DNA for both leading and lagging strand synthesis. The primase synthesizes short RNA primers on the lagging strand that the polymerase elongates using dNTPs. Possesses helicase-like motifs and therefore may act as the helicase subunit of the complex.' .
?annotation3 a up:Subunit_Annotation ;
rdfs:comment 'Associates with the primase and the primase-associated factor to form the helicase-primase complex.' .
?annotation4 a up:Subcellular_Location_Annotation .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the herpesviridae helicase family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf chebi:30616 .
_:904554 a rdf:Statement ;
up:attribution _:904537 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:904555 a rdf:Statement ;
up:attribution _:904538 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:904556 a rdf:Statement ;
up:attribution _:904539 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:904557 a rdf:Statement ;
up:attribution _:904540 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:904558 a rdf:Statement ;
up:attribution _:904541 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:904559 a rdf:Statement ;
up:attribution _:904542 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:904560 a rdf:Statement ;
up:attribution _:904543 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:904561 a rdf:Statement ;
up:attribution _:904544 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:235 .
_:904562 a rdf:Statement ;
up:attribution _:904545 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:347 .
_:904563 a rdf:Statement ;
up:attribution _:904546 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1048 .
_:904564 a rdf:Statement ;
up:attribution _:904547 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:904565 a rdf:Statement ;
up:attribution _:904548 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:904566 a rdf:Statement ;
up:attribution _:904549 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042025 .
_:904567 a rdf:Statement ;
up:attribution _:904550 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:904568 a rdf:Statement ;
up:attribution _:904551 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004386 .
_:904569 a rdf:Statement ;
up:attribution _:904552 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039686 .
_:904570 a rdf:Statement ;
up:source unirule:MF_04030 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:904571 a rdf:Statement ;
up:attribution _:904553 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04030
#Rule MF_04030 Created by:? on:2016-05-09 Modified by:Edouard de Castro on:2022-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04030 .
?thisOrganism rdfs:subClassOf+ taxon:10292 .
BIND(URI(CONCAT(STR(?this), '#MF_04030a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04030a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04030a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04030a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04030a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch18 faldo:location ?templateMotifSequenceMatchRegionP1018919 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1018921 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10189MF_0403014 .
?templateMotifSequenceMatchRegionP1018919 faldo:begin ?templateMotifSequenceMatchBeginP1018920 .
?templateMotifSequenceMatchBeginP1018920 faldo:position ?templateMotifSequenceMatchBeginPositionP1018915 ;
faldo:reference isoform:P10189-1 .
?templateMotifSequenceProfileAlignmentOperationP1018921 edam:has_input signature:MF_04030 ;
rdf:type edam:operation_0300 .
?targetMotifMatch22 faldo:location ?targetMotifMatchRegionMatch23 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0403025 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10189MF_0403016 .
?targetMotifMatchRegionMatch23 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0403024 .
?targetMotifMatchRegionMatchBeginMF_0403024 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0403017 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0403025 edam:has_input signature:MF_04030 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10189MF_0403014, 1, (STRLEN(?templateMotifCigarP10189MF_0403014) - STRLEN(REPLACE(?templateMotifCigarP10189MF_0403014, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionP1018915) + 1)), '}'), '')))), '[a-z]', '')) AS ?step126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10189MF_0403016, 1, (STRLEN(?targetMotifMatchCigarP10189MF_0403016) - STRLEN(REPLACE(?targetMotifMatchCigarP10189MF_0403016, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10189MF_0403016, 1, (STRLEN(?targetMotifMatchCigarP10189MF_0403016) - STRLEN(REPLACE(?targetMotifMatchCigarP10189MF_0403016, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), '')))), '[^-]', ''))) AS ?step227) .
BIND(((?step227 + ?targetMotifMatchRegionMatchBeginPositionMF_0403017) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10189MF_0403014, 1, (STRLEN(?templateMotifCigarP10189MF_0403014) - STRLEN(REPLACE(?templateMotifCigarP10189MF_0403014, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionP1018915) + 1)), '}'), '')))), '[a-z]', '')) AS ?step128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10189MF_0403016, 1, (STRLEN(?targetMotifMatchCigarP10189MF_0403016) - STRLEN(REPLACE(?targetMotifMatchCigarP10189MF_0403016, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10189MF_0403016, 1, (STRLEN(?targetMotifMatchCigarP10189MF_0403016) - STRLEN(REPLACE(?targetMotifMatchCigarP10189MF_0403016, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), '')))), '[^-]', ''))) AS ?step229) .
BIND(((?step229 + ?targetMotifMatchRegionMatchBeginPositionMF_0403017) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]AG[ARNDCQEGHILKMFPSTWYVBZJUOX]GK[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04030a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
}
"xsd:string |
