| http://purl.uniprot.org/unirules/MF_04105#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:954702 up:source unirule:MF_04105 .
_:954703 up:source unirule:MF_04105 .
_:954704 up:source unirule:MF_04105 .
_:954705 up:source unirule:MF_04105 .
_:954706 up:source unirule:MF_04105 .
_:954707 up:source unirule:MF_04105 .
_:954708 up:source unirule:MF_04105 .
_:954709 up:source unirule:MF_04105 .
_:954710 up:source unirule:MF_04105 .
_:954711 up:source unirule:MF_04105 .
_:954712 up:source unirule:MF_04105 .
_:954713 up:source unirule:MF_04105 .
_:954714 up:source unirule:MF_04105 .
_:954715 up:source unirule:MF_04105 .
_:954716 up:source unirule:MF_04105 .
_:954717 up:source unirule:MF_04105 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0140678 ,
keyword:1049 ,
keyword:1188 ,
keyword:204 ,
keyword:238 ,
keyword:578 ,
keyword:732 ;
up:precursor "true"^^xsd:boolean ;
up:recommendedName ?name0 .
?name0 up:fullName 'Antiholin' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Involved in lysis inhibition. Senses superinfections and inhibits the holin, thereby delaying the host cell lysis timing. The genomic DNA from the superinfecting phage bound to the complex holin-antiholin probably serves as a signal for the lysis inhibition and blocks the holin multimerization.' .
?annotation2 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer; in free-form. Homomultimer. Heterotetramer composed of 2 holin and 2 antiholin. The holin-antiholin complex binds dsDNA. Interacts (via C-terminus) with holin (via C-terminus); this interaction blocks the holin homomultimerization and delays the host cell lysis.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the T4likevirus antiholin family.' .
?case6 up:classifiedWith keyword:1015 .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?sam13 up:classifiedWith keyword:732 .
?signal14 faldo:begin ?signalb15 ;
faldo:end ?signale16 .
?signalb15 faldo:position ?signalbp17 .
?signale16 faldo:position ?signalep18 .
?keyword19 up:range ?signal14 .
_:954718 a rdf:Statement ;
up:attribution _:954702 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:954719 a rdf:Statement ;
up:attribution _:954703 ;
rdf:subject ?this ;
rdf:predicate up:precursor ;
rdf:object "true"^^xsd:boolean .
_:954720 a rdf:Statement ;
up:attribution _:954704 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:954721 a rdf:Statement ;
up:attribution _:954705 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:954722 a rdf:Statement ;
up:attribution _:954706 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:954723 a rdf:Statement ;
up:attribution _:954707 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:954724 a rdf:Statement ;
up:attribution _:954708 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:204 .
_:954725 a rdf:Statement ;
up:attribution _:954709 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:578 .
_:954726 a rdf:Statement ;
up:attribution _:954710 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
_:954727 a rdf:Statement ;
up:attribution _:954711 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1049 .
_:954728 a rdf:Statement ;
up:attribution _:954712 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1188 .
_:954729 a rdf:Statement ;
up:attribution _:954713 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:954730 a rdf:Statement ;
up:attribution _:954714 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0140678 .
_:954731 a rdf:Statement ;
up:attribution _:954715 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:954732 a rdf:Statement ;
up:source unirule:MF_04105 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:954733 a rdf:Statement ;
up:attribution _:954716 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:954734 a rdf:Statement ;
up:attribution _:954717 ;
rdf:subject ?sam13 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04105
#Rule MF_04105 Created by:? on:2016-10-18 Modified by:Catherine Rivoire on:2022-12-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04105 .
?thisOrganism rdfs:subClassOf+ taxon:2731619 .
BIND(URI(CONCAT(STR(?this), '#MF_04105a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04105a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_04105a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04105a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04105a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch24 faldo:location ?templateMotifSequenceMatchRegionP1330425 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1330427 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13304MF_0410520 .
?templateMotifSequenceMatchRegionP1330425 faldo:begin ?templateMotifSequenceMatchBeginP1330426 .
?templateMotifSequenceMatchBeginP1330426 faldo:position ?templateMotifSequenceMatchBeginPositionP1330421 ;
faldo:reference isoform:P13304-1 .
?templateMotifSequenceProfileAlignmentOperationP1330427 edam:has_input signature:MF_04105 ;
rdf:type edam:operation_0300 .
?targetMotifMatch28 faldo:location ?targetMotifMatchRegionMatch29 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0410531 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13304MF_0410522 .
?targetMotifMatchRegionMatch29 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0410530 .
?targetMotifMatchRegionMatchBeginMF_0410530 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0410523 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0410531 edam:has_input signature:MF_04105 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagdisulf) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13304MF_0410520, 1, (STRLEN(?templateMotifCigarP13304MF_0410520) - STRLEN(REPLACE(?templateMotifCigarP13304MF_0410520, CONCAT('^(?:-*[^-]){', STR(((69 - ?templateMotifSequenceMatchBeginPositionP1330421) + 1)), '}'), '')))), '[a-z]', '')) AS ?step132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13304MF_0410522, 1, (STRLEN(?targetMotifMatchCigarP13304MF_0410522) - STRLEN(REPLACE(?targetMotifMatchCigarP13304MF_0410522, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13304MF_0410522, 1, (STRLEN(?targetMotifMatchCigarP13304MF_0410522) - STRLEN(REPLACE(?targetMotifMatchCigarP13304MF_0410522, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), '')))), '[^-]', ''))) AS ?step233) .
BIND(((?step233 + ?targetMotifMatchRegionMatchBeginPositionMF_0410523) - 1) AS ?thisPositionOn11) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13304MF_0410520, 1, (STRLEN(?templateMotifCigarP13304MF_0410520) - STRLEN(REPLACE(?templateMotifCigarP13304MF_0410520, CONCAT('^(?:-*[^-]){', STR(((75 - ?templateMotifSequenceMatchBeginPositionP1330421) + 1)), '}'), '')))), '[a-z]', '')) AS ?step134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13304MF_0410522, 1, (STRLEN(?targetMotifMatchCigarP13304MF_0410522) - STRLEN(REPLACE(?targetMotifMatchCigarP13304MF_0410522, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13304MF_0410522, 1, (STRLEN(?targetMotifMatchCigarP13304MF_0410522) - STRLEN(REPLACE(?targetMotifMatchCigarP13304MF_0410522, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), '')))), '[^-]', ''))) AS ?step235) .
BIND(((?step235 + ?targetMotifMatchRegionMatchBeginPositionMF_0410523) - 1) AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn11, (?thisPositionOn12 - ?thisPositionOn11)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04105a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag37) .
}
BIND(IF(BOUND(?tagdisulf), ?caseWithTag37, ?UNBOUND_VARIABLE) AS ?case6) .
OPTIONAL {
?this up:annotation ?samsignal38 ;
up:sequence ?thisSequence .
?samsignal38 up:range ?samsignalr39 ;
rdf:type up:Signal_Peptide_Annotation .
?samsignalr39 faldo:begin ?samsignalb40 ;
faldo:end ?samsignale41 .
?samsignalb40 faldo:position ?samsignalbp42 ;
faldo:reference ?thisSequence .
?samsignale41 faldo:position ?samsignalep43 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam13) .
}
BIND(URI(CONCAT(STR(?this), '#MF_04105a19')) AS ?keyword19) .
}
"xsd:string |
