| http://purl.uniprot.org/unirules/MF_04106#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:955005 up:source unirule:MF_04106 .
_:955006 up:source unirule:MF_04106 .
_:955007 up:source unirule:MF_04106 .
_:955008 up:source unirule:MF_04106 .
_:955009 up:source unirule:MF_04106 .
_:955010 up:source unirule:MF_04106 .
_:955011 up:source unirule:MF_04106 .
_:955012 up:source unirule:MF_04106 .
_:955013 up:source unirule:MF_04106 .
_:955014 up:source unirule:MF_04106 .
_:955015 up:source unirule:MF_04106 .
_:955016 up:source unirule:MF_04106 .
_:955017 up:source unirule:MF_04106 .
_:955018 up:source unirule:MF_04106 .
_:955019 up:source unirule:MF_04106 .
_:955020 up:source unirule:MF_04106 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0098025 ,
keyword:1188 ,
keyword:1226 ,
keyword:1227 ,
keyword:1245 ,
keyword:426 ,
keyword:946 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Baseplate wedge protein gp10' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Baseplate protein. Involved in the tail assembly.' .
?annotation2 a up:Subunit_Annotation ;
rdfs:comment 'Homotrimer; disulfide-linked. Heteromultimer with gp7; a gp10 molecule is disulfide-linked to gp7 and the other two remaining gp10 molecules form a disulfide bond.' .
?annotation3 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Present in the baseplate' .
?annotation3li4 up:cellularComponent .
?annotation5 a up:Induction_Annotation ;
rdfs:comment 'Expressed in the late phase of the viral replicative cycle.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the T4likevirus baseplate wedge protein gp10 family.' .
?case7 up:classifiedWith keyword:1015 .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Disulfide_Bond_Annotation ;
rdfs:comment 'Interchain (with GP7); alternate' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Disulfide_Bond_Annotation ;
rdfs:comment 'Interchain; alternate' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
_:955021 a rdf:Statement ;
up:attribution _:955005 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:955022 a rdf:Statement ;
up:attribution _:955006 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:955023 a rdf:Statement ;
up:attribution _:955007 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:955024 a rdf:Statement ;
up:attribution _:955008 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:955025 a rdf:Statement ;
up:attribution _:955009 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:955026 a rdf:Statement ;
up:attribution _:955010 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:955027 a rdf:Statement ;
up:attribution _:955011 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:426 .
_:955028 a rdf:Statement ;
up:attribution _:955012 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1226 .
_:955029 a rdf:Statement ;
up:attribution _:955013 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1245 .
_:955030 a rdf:Statement ;
up:attribution _:955014 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1227 .
_:955031 a rdf:Statement ;
up:attribution _:955015 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:955032 a rdf:Statement ;
up:attribution _:955016 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1188 .
_:955033 a rdf:Statement ;
up:attribution _:955017 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0098025 .
_:955034 a rdf:Statement ;
up:attribution _:955018 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:955035 a rdf:Statement ;
up:source unirule:MF_04106 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:955036 a rdf:Statement ;
up:attribution _:955019 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:955037 a rdf:Statement ;
up:source unirule:MF_04106 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:955038 a rdf:Statement ;
up:attribution _:955020 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04106
#Rule MF_04106 Created by:? on:2016-10-18 Modified by:Chantal Hulo on:2022-08-23
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04106 .
?thisOrganism rdfs:subClassOf+ taxon:2731619 .
BIND(URI(CONCAT(STR(?this), '#MF_04106a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04106a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_04106a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04106a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04106a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04106a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch24 faldo:location ?templateMotifSequenceMatchRegionP1092825 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1092827 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10928MF_0410620 .
?templateMotifSequenceMatchRegionP1092825 faldo:begin ?templateMotifSequenceMatchBeginP1092826 .
?templateMotifSequenceMatchBeginP1092826 faldo:position ?templateMotifSequenceMatchBeginPositionP1092821 ;
faldo:reference isoform:P10928-1 .
?templateMotifSequenceProfileAlignmentOperationP1092827 edam:has_input signature:MF_04106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch28 faldo:location ?targetMotifMatchRegionMatch29 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0410631 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10928MF_0410622 .
?targetMotifMatchRegionMatch29 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0410630 .
?targetMotifMatchRegionMatchBeginMF_0410630 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0410623 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0410631 edam:has_input signature:MF_04106 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagdisulf) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10928MF_0410620, 1, (STRLEN(?templateMotifCigarP10928MF_0410620) - STRLEN(REPLACE(?templateMotifCigarP10928MF_0410620, CONCAT('^(?:-*[^-]){', STR(((555 - ?templateMotifSequenceMatchBeginPositionP1092821) + 1)), '}'), '')))), '[a-z]', '')) AS ?step132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10928MF_0410622, 1, (STRLEN(?targetMotifMatchCigarP10928MF_0410622) - STRLEN(REPLACE(?targetMotifMatchCigarP10928MF_0410622, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10928MF_0410622, 1, (STRLEN(?targetMotifMatchCigarP10928MF_0410622) - STRLEN(REPLACE(?targetMotifMatchCigarP10928MF_0410622, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), '')))), '[^-]', ''))) AS ?step233) .
BIND(((?step233 + ?targetMotifMatchRegionMatchBeginPositionMF_0410623) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04106a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch39 faldo:location ?templateMotifSequenceMatchRegionP1092840 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1092842 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10928MF_0410635 .
?templateMotifSequenceMatchRegionP1092840 faldo:begin ?templateMotifSequenceMatchBeginP1092841 .
?templateMotifSequenceMatchBeginP1092841 faldo:position ?templateMotifSequenceMatchBeginPositionP1092836 ;
faldo:reference isoform:P10928-1 .
?templateMotifSequenceProfileAlignmentOperationP1092842 edam:has_input signature:MF_04106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch43 faldo:location ?targetMotifMatchRegionMatch44 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0410646 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10928MF_0410637 .
?targetMotifMatchRegionMatch44 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0410645 .
?targetMotifMatchRegionMatchBeginMF_0410645 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0410638 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0410646 edam:has_input signature:MF_04106 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagdisulf) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10928MF_0410635, 1, (STRLEN(?templateMotifCigarP10928MF_0410635) - STRLEN(REPLACE(?templateMotifCigarP10928MF_0410635, CONCAT('^(?:-*[^-]){', STR(((555 - ?templateMotifSequenceMatchBeginPositionP1092836) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10928MF_0410637, 1, (STRLEN(?targetMotifMatchCigarP10928MF_0410637) - STRLEN(REPLACE(?targetMotifMatchCigarP10928MF_0410637, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10928MF_0410637, 1, (STRLEN(?targetMotifMatchCigarP10928MF_0410637) - STRLEN(REPLACE(?targetMotifMatchCigarP10928MF_0410637, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) .
BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0410638) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04106a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag50) .
}
BIND(IF(BOUND(?tagdisulf), ?caseWithTag50, ?UNBOUND_VARIABLE) AS ?case7) .
}
"xsd:string |
