| http://purl.uniprot.org/unirules/MF_04113#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:957172 up:source unirule:MF_04113 .
_:957173 up:source unirule:MF_04113 .
_:957174 up:source unirule:MF_04113 .
_:957175 up:source unirule:MF_04113 .
_:957176 up:source unirule:MF_04113 .
_:957177 up:source unirule:MF_04113 .
_:957178 up:source unirule:MF_04113 .
_:957179 up:source unirule:MF_04113 .
_:957180 up:source unirule:MF_04113 .
_:957181 up:source unirule:MF_04113 .
_:957182 up:fullName 'Mature capsid vertex protein' ;
rdf:type up:Structured_Name .
_:957183 up:fullName 'gp24*' ;
rdf:type up:Structured_Name .
_:957184 up:source unirule:MF_04113 .
_:957185 up:source unirule:MF_04113 .
_:957186 up:source unirule:MF_04113 .
_:957187 up:source unirule:MF_04113 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0019028 ,
keyword:167 ,
keyword:426 ,
keyword:946 ;
up:component ?namedpart7 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Capsid vertex protein' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'gp24' ;
rdf:type up:Structured_Name .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Capsid protein that self-associates to form pentons, building the capsid in association with hexamers of the major capsid protein and one dodecamer of the portal protein.' .
?annotation3 a up:Subunit_Annotation ;
rdfs:comment 'Homopentamer. Interacts with the portal protein. Interacts with the major capsid protein that forms hexamers.' .
?annotation4 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Part of the icosahedric capsid shell of the immature virion' .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the Tevenvirinae capsid vertex protein family.' .
?namedpart7 up:alternativeName _:957183 ;
up:recommendedName _:957182 .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage' .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Capsid vertex protein' .
?pfsb17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Mature capsid vertex protein' .
?pfsb23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
_:957188 a rdf:Statement ;
up:attribution _:957172 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:957189 a rdf:Statement ;
up:attribution _:957173 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:957190 a rdf:Statement ;
up:attribution _:957174 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:957191 a rdf:Statement ;
up:attribution _:957175 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:957192 a rdf:Statement ;
up:attribution _:957176 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:957193 a rdf:Statement ;
up:attribution _:957177 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:957194 a rdf:Statement ;
up:attribution _:957178 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:167 .
_:957195 a rdf:Statement ;
up:attribution _:957179 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:426 .
_:957196 a rdf:Statement ;
up:attribution _:957180 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:957197 a rdf:Statement ;
up:attribution _:957181 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019028 .
_:957198 a rdf:Statement ;
up:attribution _:957184 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart7 .
_:957199 a rdf:Statement ;
up:source unirule:MF_04113 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:957200 a rdf:Statement ;
up:attribution _:957185 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:957201 a rdf:Statement ;
up:source unirule:MF_04113 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:957202 a rdf:Statement ;
up:attribution _:957186 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:957203 a rdf:Statement ;
up:source unirule:MF_04113 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:957204 a rdf:Statement ;
up:attribution _:957187 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04113
#Rule MF_04113 Created by:? on:2017-10-11 Modified by:Chantal Hulo on:2024-04-18
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04113 .
?thisOrganism rdfs:subClassOf+ taxon:2731619 .
BIND(URI(CONCAT(STR(?this), '#MF_04113a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04113a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04113a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04113a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04113a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04113a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04113a7')) AS ?namedpart7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch31 faldo:location ?templateMotifSequenceMatchRegionP1989632 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1989634 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP19896MF_0411327 .
?templateMotifSequenceMatchRegionP1989632 faldo:begin ?templateMotifSequenceMatchBeginP1989633 .
?templateMotifSequenceMatchBeginP1989633 faldo:position ?templateMotifSequenceMatchBeginPositionP1989628 ;
faldo:reference isoform:P19896-1 .
?templateMotifSequenceProfileAlignmentOperationP1989634 edam:has_input signature:MF_04113 ;
rdf:type edam:operation_0300 .
?targetMotifMatch35 faldo:location ?targetMotifMatchRegionMatch36 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0411338 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP19896MF_0411329 .
?targetMotifMatchRegionMatch36 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0411337 .
?targetMotifMatchRegionMatchBeginMF_0411337 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0411330 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0411338 edam:has_input signature:MF_04113 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagcleavage) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP19896MF_0411327, 1, (STRLEN(?templateMotifCigarP19896MF_0411327) - STRLEN(REPLACE(?templateMotifCigarP19896MF_0411327, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionP1989628) + 1)), '}'), '')))), '[a-z]', '')) AS ?step139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP19896MF_0411329, 1, (STRLEN(?targetMotifMatchCigarP19896MF_0411329) - STRLEN(REPLACE(?targetMotifMatchCigarP19896MF_0411329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP19896MF_0411329, 1, (STRLEN(?targetMotifMatchCigarP19896MF_0411329) - STRLEN(REPLACE(?targetMotifMatchCigarP19896MF_0411329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step139), '}'), '')))), '[^-]', ''))) AS ?step240) .
BIND(((?step240 + ?targetMotifMatchRegionMatchBeginPositionMF_0411330) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP19896MF_0411327, 1, (STRLEN(?templateMotifCigarP19896MF_0411327) - STRLEN(REPLACE(?templateMotifCigarP19896MF_0411327, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP1989628) + 1)), '}'), '')))), '[a-z]', '')) AS ?step141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP19896MF_0411329, 1, (STRLEN(?targetMotifMatchCigarP19896MF_0411329) - STRLEN(REPLACE(?targetMotifMatchCigarP19896MF_0411329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP19896MF_0411329, 1, (STRLEN(?targetMotifMatchCigarP19896MF_0411329) - STRLEN(REPLACE(?targetMotifMatchCigarP19896MF_0411329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), '')))), '[^-]', ''))) AS ?step242) .
BIND(((?step242 + ?targetMotifMatchRegionMatchBeginPositionMF_0411330) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)) = 'ES')) .
BIND(URI(CONCAT(STR(?this), '#MF_04113a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch48 faldo:location ?templateMotifSequenceMatchRegionP1989649 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1989651 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP19896MF_0411344 .
?templateMotifSequenceMatchRegionP1989649 faldo:begin ?templateMotifSequenceMatchBeginP1989650 .
?templateMotifSequenceMatchBeginP1989650 faldo:position ?templateMotifSequenceMatchBeginPositionP1989645 ;
faldo:reference isoform:P19896-1 .
?templateMotifSequenceProfileAlignmentOperationP1989651 edam:has_input signature:MF_04113 ;
rdf:type edam:operation_0300 .
?targetMotifMatch52 faldo:location ?targetMotifMatchRegionMatch53 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0411355 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP19896MF_0411346 .
?targetMotifMatchRegionMatch53 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0411354 .
?targetMotifMatchRegionMatchBeginMF_0411354 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0411347 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0411355 edam:has_input signature:MF_04113 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn19) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn20) .
BIND(?this AS ?pfs2t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) .
FILTER ((BOUND(?thisPositionOn19) && BOUND(?thisPositionOn20))) .
BIND(URI(CONCAT(STR(?this), '#MF_04113a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionP1989662 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1989664 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP19896MF_0411357 .
?templateMotifSequenceMatchRegionP1989662 faldo:begin ?templateMotifSequenceMatchBeginP1989663 .
?templateMotifSequenceMatchBeginP1989663 faldo:position ?templateMotifSequenceMatchBeginPositionP1989658 ;
faldo:reference isoform:P19896-1 .
?templateMotifSequenceProfileAlignmentOperationP1989664 edam:has_input signature:MF_04113 ;
rdf:type edam:operation_0300 .
?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0411368 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP19896MF_0411359 .
?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0411367 .
?targetMotifMatchRegionMatchBeginMF_0411367 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0411360 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0411368 edam:has_input signature:MF_04113 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP19896MF_0411357, 1, (STRLEN(?templateMotifCigarP19896MF_0411357) - STRLEN(REPLACE(?templateMotifCigarP19896MF_0411357, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP1989658) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP19896MF_0411359, 1, (STRLEN(?targetMotifMatchCigarP19896MF_0411359) - STRLEN(REPLACE(?targetMotifMatchCigarP19896MF_0411359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP19896MF_0411359, 1, (STRLEN(?targetMotifMatchCigarP19896MF_0411359) - STRLEN(REPLACE(?targetMotifMatchCigarP19896MF_0411359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0411360) - 1) AS ?thisPositionOn25) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn26) .
BIND(?this AS ?pfs3t71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse24) .
FILTER ((BOUND(?thisPositionOn25) && BOUND(?thisPositionOn26))) .
BIND(URI(CONCAT(STR(?this), '#MF_04113a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag72) .
}
BIND(IF(BOUND(?tagcleavage), ?caseWithTag72, ?UNBOUND_VARIABLE) AS ?case8) .
}
"xsd:string |
