| http://purl.uniprot.org/unirules/MF_04117#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04117#construct-template-30 |
| http://purl.uniprot.org/unirules/MF_04117#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04117#construct-template-71 |
| http://purl.uniprot.org/unirules/MF_04117#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04117#construct-template-72 |
| http://purl.uniprot.org/unirules/MF_04117#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04117#construct-template-73 |
| http://purl.uniprot.org/unirules/MF_04117#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04117#construct-template-74 |
| http://purl.uniprot.org/unirules/MF_04117#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04117#construct-template-50 |
| http://purl.uniprot.org/unirules/MF_04117#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04117#construct-template-59 |
| http://purl.uniprot.org/unirules/MF_04117#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04117#construct-template-35 |
| http://purl.uniprot.org/unirules/MF_04117#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04117#construct-template-36 |
| http://purl.uniprot.org/unirules/MF_04117#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04117#construct-template-37 |
| http://purl.uniprot.org/unirules/MF_04117#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04117#construct-template-38 |
| http://purl.uniprot.org/unirules/MF_04117#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04117#construct-template-79 |
| http://purl.uniprot.org/unirules/MF_04117#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04117#construct-template-55 |
| http://purl.uniprot.org/unirules/MF_04117#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04117#construct-template-31 |
| http://purl.uniprot.org/unirules/MF_04117#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04117#construct-template-56 |
| http://purl.uniprot.org/unirules/MF_04117#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04117#construct-template-32 |
| http://purl.uniprot.org/unirules/MF_04117#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04117#construct-template-57 |
| http://purl.uniprot.org/unirules/MF_04117#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04117#construct-template-33 |
| http://purl.uniprot.org/unirules/MF_04117#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04117#construct-template-58 |
| http://purl.uniprot.org/unirules/MF_04117#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04117#construct-template-34 |
| http://purl.uniprot.org/unirules/MF_04117#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_04117#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_04117#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_04117#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_04117#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_04117#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:958175 up:source unirule:MF_04117 .
_:958176 up:source unirule:MF_04117 .
_:958177 up:source unirule:MF_04117 .
_:958178 up:source unirule:MF_04117 .
_:958179 up:source unirule:MF_04117 .
_:958180 up:source unirule:MF_04117 .
_:958181 up:source unirule:MF_04117 .
_:958182 up:source unirule:MF_04117 .
_:958183 up:source unirule:MF_04117 .
_:958184 up:source unirule:MF_04117 .
_:958185 up:source unirule:MF_04117 .
_:958186 up:fullName 'Mature major capsid protein' ;
rdf:type up:Structured_Name .
_:958187 up:fullName 'gp23*' ;
rdf:type up:Structured_Name .
_:958188 up:source unirule:MF_04117 .
_:958189 up:source unirule:MF_04117 .
_:958190 up:source unirule:MF_04117 .
_:958191 up:source unirule:MF_04117 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0019028 ,
keyword:167 ,
keyword:426 ,
keyword:946 ;
up:component ?namedpart8 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Major capsid protein' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'gp23' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Major head protein' ;
rdf:type up:Structured_Name .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Major capsid protein that self-associates to form hexamers, building most of the capsid in association with pentons made of the capsid vertex protein and one dodecamer of the portal protein.' .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Homohexamer. Interacts with the portal protein. Interacts with the capsid vertex protein that forms pentamers.' .
?annotation5 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Part of the icosahedric capsid shell of the immature virion' .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the Tevenvirinae major capsid protein family.' .
?namedpart8 up:alternativeName _:958187 ;
up:recommendedName _:958186 .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage' .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Major capsid protein' .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Mature major capsid protein' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
_:958192 a rdf:Statement ;
up:attribution _:958175 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:958193 a rdf:Statement ;
up:attribution _:958176 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:958194 a rdf:Statement ;
up:attribution _:958177 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:958195 a rdf:Statement ;
up:attribution _:958178 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:958196 a rdf:Statement ;
up:attribution _:958179 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:958197 a rdf:Statement ;
up:attribution _:958180 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:958198 a rdf:Statement ;
up:attribution _:958181 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:958199 a rdf:Statement ;
up:attribution _:958182 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:167 .
_:958200 a rdf:Statement ;
up:attribution _:958183 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:426 .
_:958201 a rdf:Statement ;
up:attribution _:958184 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:958202 a rdf:Statement ;
up:attribution _:958185 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019028 .
_:958203 a rdf:Statement ;
up:attribution _:958188 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart8 .
_:958204 a rdf:Statement ;
up:source unirule:MF_04117 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:958205 a rdf:Statement ;
up:attribution _:958189 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:958206 a rdf:Statement ;
up:source unirule:MF_04117 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:958207 a rdf:Statement ;
up:attribution _:958190 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:958208 a rdf:Statement ;
up:source unirule:MF_04117 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:958209 a rdf:Statement ;
up:attribution _:958191 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04117
#Rule MF_04117 Created by:? on:2017-10-10 Modified by:Chantal Hulo on:2024-04-18
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04117 .
?thisOrganism rdfs:subClassOf+ taxon:2731619 .
BIND(URI(CONCAT(STR(?this), '#MF_04117a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04117a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04117a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_04117a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04117a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04117a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04117a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_04117a8')) AS ?namedpart8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch32 faldo:location ?templateMotifSequenceMatchRegionP0453533 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0453535 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04535MF_0411728 .
?templateMotifSequenceMatchRegionP0453533 faldo:begin ?templateMotifSequenceMatchBeginP0453534 .
?templateMotifSequenceMatchBeginP0453534 faldo:position ?templateMotifSequenceMatchBeginPositionP0453529 ;
faldo:reference isoform:P04535-1 .
?templateMotifSequenceProfileAlignmentOperationP0453535 edam:has_input signature:MF_04117 ;
rdf:type edam:operation_0300 .
?targetMotifMatch36 faldo:location ?targetMotifMatchRegionMatch37 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0411739 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04535MF_0411730 .
?targetMotifMatchRegionMatch37 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0411738 .
?targetMotifMatchRegionMatchBeginMF_0411738 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0411731 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0411739 edam:has_input signature:MF_04117 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagcleavage) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04535MF_0411728, 1, (STRLEN(?templateMotifCigarP04535MF_0411728) - STRLEN(REPLACE(?templateMotifCigarP04535MF_0411728, CONCAT('^(?:-*[^-]){', STR(((65 - ?templateMotifSequenceMatchBeginPositionP0453529) + 1)), '}'), '')))), '[a-z]', '')) AS ?step140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04535MF_0411730, 1, (STRLEN(?targetMotifMatchCigarP04535MF_0411730) - STRLEN(REPLACE(?targetMotifMatchCigarP04535MF_0411730, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04535MF_0411730, 1, (STRLEN(?targetMotifMatchCigarP04535MF_0411730) - STRLEN(REPLACE(?targetMotifMatchCigarP04535MF_0411730, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step140), '}'), '')))), '[^-]', ''))) AS ?step241) .
BIND(((?step241 + ?targetMotifMatchRegionMatchBeginPositionMF_0411731) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04535MF_0411728, 1, (STRLEN(?templateMotifCigarP04535MF_0411728) - STRLEN(REPLACE(?templateMotifCigarP04535MF_0411728, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionP0453529) + 1)), '}'), '')))), '[a-z]', '')) AS ?step142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04535MF_0411730, 1, (STRLEN(?targetMotifMatchCigarP04535MF_0411730) - STRLEN(REPLACE(?targetMotifMatchCigarP04535MF_0411730, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04535MF_0411730, 1, (STRLEN(?targetMotifMatchCigarP04535MF_0411730) - STRLEN(REPLACE(?targetMotifMatchCigarP04535MF_0411730, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step142), '}'), '')))), '[^-]', ''))) AS ?step243) .
BIND(((?step243 + ?targetMotifMatchRegionMatchBeginPositionMF_0411731) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)) = 'EA')) .
BIND(URI(CONCAT(STR(?this), '#MF_04117a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch49 faldo:location ?templateMotifSequenceMatchRegionP0453550 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0453552 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04535MF_0411745 .
?templateMotifSequenceMatchRegionP0453550 faldo:begin ?templateMotifSequenceMatchBeginP0453551 .
?templateMotifSequenceMatchBeginP0453551 faldo:position ?templateMotifSequenceMatchBeginPositionP0453546 ;
faldo:reference isoform:P04535-1 .
?templateMotifSequenceProfileAlignmentOperationP0453552 edam:has_input signature:MF_04117 ;
rdf:type edam:operation_0300 .
?targetMotifMatch53 faldo:location ?targetMotifMatchRegionMatch54 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0411756 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04535MF_0411747 .
?targetMotifMatchRegionMatch54 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0411755 .
?targetMotifMatchRegionMatchBeginMF_0411755 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0411748 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0411756 edam:has_input signature:MF_04117 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn20) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn21) .
BIND(?this AS ?pfs2t57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((BOUND(?thisPositionOn20) && BOUND(?thisPositionOn21))) .
BIND(URI(CONCAT(STR(?this), '#MF_04117a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch62 faldo:location ?templateMotifSequenceMatchRegionP0453563 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0453565 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04535MF_0411758 .
?templateMotifSequenceMatchRegionP0453563 faldo:begin ?templateMotifSequenceMatchBeginP0453564 .
?templateMotifSequenceMatchBeginP0453564 faldo:position ?templateMotifSequenceMatchBeginPositionP0453559 ;
faldo:reference isoform:P04535-1 .
?templateMotifSequenceProfileAlignmentOperationP0453565 edam:has_input signature:MF_04117 ;
rdf:type edam:operation_0300 .
?targetMotifMatch66 faldo:location ?targetMotifMatchRegionMatch67 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0411769 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04535MF_0411760 .
?targetMotifMatchRegionMatch67 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0411768 .
?targetMotifMatchRegionMatchBeginMF_0411768 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0411761 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0411769 edam:has_input signature:MF_04117 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04535MF_0411758, 1, (STRLEN(?templateMotifCigarP04535MF_0411758) - STRLEN(REPLACE(?templateMotifCigarP04535MF_0411758, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionP0453559) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04535MF_0411760, 1, (STRLEN(?targetMotifMatchCigarP04535MF_0411760) - STRLEN(REPLACE(?targetMotifMatchCigarP04535MF_0411760, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04535MF_0411760, 1, (STRLEN(?targetMotifMatchCigarP04535MF_0411760) - STRLEN(REPLACE(?targetMotifMatchCigarP04535MF_0411760, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0411761) - 1) AS ?thisPositionOn26) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn27) .
BIND(?this AS ?pfs3t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((BOUND(?thisPositionOn26) && BOUND(?thisPositionOn27))) .
BIND(URI(CONCAT(STR(?this), '#MF_04117a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag73) .
}
BIND(IF(BOUND(?tagcleavage), ?caseWithTag73, ?UNBOUND_VARIABLE) AS ?case9) .
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_04117 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_04117#construct |
