| http://purl.uniprot.org/unirules/MF_04141#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:969088 up:source unirule:MF_04141 .
_:969089 up:source unirule:MF_04141 .
_:969090 up:source unirule:MF_04141 .
_:969091 up:source unirule:MF_04141 .
_:969092 up:source unirule:MF_04141 .
_:969093 up:source unirule:MF_04141 .
_:969094 up:source unirule:MF_04141 .
_:969095 up:source unirule:MF_04141 .
_:969096 up:source unirule:MF_04141 .
_:969097 up:source unirule:MF_04141 .
_:969098 up:source unirule:MF_04141 .
_:969099 up:source unirule:MF_04141 .
_:969100 up:source unirule:MF_04141 .
_:969101 up:source unirule:MF_04141 .
_:969102 up:source unirule:MF_04141 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0044423 ,
GO:0106274 ,
keyword:328 ,
keyword:548 ,
keyword:808 ,
keyword:946 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.4.2.31' ;
up:fullName 'NAD--protein ADP-ribosyltransferase modA' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'RNA polymerase ADP-ribosylase modA' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'modA' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'ADP-ribosyltransferase that efficiently ADP-ribosylates both alpha subunits of host RNA polymerase RPOA. The ModA-induced ADP-ribosylation of RPOA alpha subunits inhibits transcription from viral early promoters.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subcellular_Location_Annotation ;
rdfs:comment 'This protein is injected from the virion into the bacterial cell' .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the Tevenvirinae NAD--protein ADP-ribosyltransferase modA family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Active_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:57540 .
_:969103 a rdf:Statement ;
up:attribution _:969088 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:969104 a rdf:Statement ;
up:attribution _:969089 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:969105 a rdf:Statement ;
up:attribution _:969090 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:969106 a rdf:Statement ;
up:attribution _:969091 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:969107 a rdf:Statement ;
up:attribution _:969092 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:969108 a rdf:Statement ;
up:attribution _:969093 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:969109 a rdf:Statement ;
up:attribution _:969094 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:969110 a rdf:Statement ;
up:attribution _:969095 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:328 .
_:969111 a rdf:Statement ;
up:attribution _:969096 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:969112 a rdf:Statement ;
up:attribution _:969097 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:969113 a rdf:Statement ;
up:attribution _:969098 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:969114 a rdf:Statement ;
up:attribution _:969099 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0106274 .
_:969115 a rdf:Statement ;
up:attribution _:969100 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044423 .
_:969116 a rdf:Statement ;
up:source unirule:MF_04141 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:969117 a rdf:Statement ;
up:attribution _:969101 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:969118 a rdf:Statement ;
up:source unirule:MF_04141 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:969119 a rdf:Statement ;
up:attribution _:969102 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04141
#Rule MF_04141 Created by:? on:2019-10-08 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04141 .
?thisOrganism rdfs:subClassOf+ taxon:1198136 .
BIND(URI(CONCAT(STR(?this), '#MF_04141a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04141a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04141a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04141a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04141a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04141a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch26 faldo:location ?templateMotifSequenceMatchRegionP3942127 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3942129 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39421MF_0414122 .
?templateMotifSequenceMatchRegionP3942127 faldo:begin ?templateMotifSequenceMatchBeginP3942128 .
?templateMotifSequenceMatchBeginP3942128 faldo:position ?templateMotifSequenceMatchBeginPositionP3942123 ;
faldo:reference isoform:P39421-1 .
?templateMotifSequenceProfileAlignmentOperationP3942129 edam:has_input signature:MF_04141 ;
rdf:type edam:operation_0300 .
?targetMotifMatch30 faldo:location ?targetMotifMatchRegionMatch31 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0414133 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39421MF_0414124 .
?targetMotifMatchRegionMatch31 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0414132 .
?targetMotifMatchRegionMatchBeginMF_0414132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0414125 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0414133 edam:has_input signature:MF_04141 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39421MF_0414122, 1, (STRLEN(?templateMotifCigarP39421MF_0414122) - STRLEN(REPLACE(?templateMotifCigarP39421MF_0414122, CONCAT('^(?:-*[^-]){', STR(((165 - ?templateMotifSequenceMatchBeginPositionP3942123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39421MF_0414124, 1, (STRLEN(?targetMotifMatchCigarP39421MF_0414124) - STRLEN(REPLACE(?targetMotifMatchCigarP39421MF_0414124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39421MF_0414124, 1, (STRLEN(?targetMotifMatchCigarP39421MF_0414124) - STRLEN(REPLACE(?targetMotifMatchCigarP39421MF_0414124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), '')))), '[^-]', ''))) AS ?step235) .
BIND(((?step235 + ?targetMotifMatchRegionMatchBeginPositionMF_0414125) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_04141a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch41 faldo:location ?templateMotifSequenceMatchRegionP3942142 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3942144 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39421MF_0414137 .
?templateMotifSequenceMatchRegionP3942142 faldo:begin ?templateMotifSequenceMatchBeginP3942143 .
?templateMotifSequenceMatchBeginP3942143 faldo:position ?templateMotifSequenceMatchBeginPositionP3942138 ;
faldo:reference isoform:P39421-1 .
?templateMotifSequenceProfileAlignmentOperationP3942144 edam:has_input signature:MF_04141 ;
rdf:type edam:operation_0300 .
?targetMotifMatch45 faldo:location ?targetMotifMatchRegionMatch46 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0414148 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39421MF_0414139 .
?targetMotifMatchRegionMatch46 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0414147 .
?targetMotifMatchRegionMatchBeginMF_0414147 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0414140 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0414148 edam:has_input signature:MF_04141 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39421MF_0414137, 1, (STRLEN(?templateMotifCigarP39421MF_0414137) - STRLEN(REPLACE(?templateMotifCigarP39421MF_0414137, CONCAT('^(?:-*[^-]){', STR(((72 - ?templateMotifSequenceMatchBeginPositionP3942138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39421MF_0414139, 1, (STRLEN(?targetMotifMatchCigarP39421MF_0414139) - STRLEN(REPLACE(?targetMotifMatchCigarP39421MF_0414139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39421MF_0414139, 1, (STRLEN(?targetMotifMatchCigarP39421MF_0414139) - STRLEN(REPLACE(?targetMotifMatchCigarP39421MF_0414139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) .
BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0414140) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_04141a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
}
"xsd:string |
