| http://purl.uniprot.org/unirules/MF_04142#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:969359 up:source unirule:MF_04142 .
_:969360 up:source unirule:MF_04142 .
_:969361 up:source unirule:MF_04142 .
_:969362 up:source unirule:MF_04142 .
_:969363 up:source unirule:MF_04142 .
_:969364 up:source unirule:MF_04142 .
_:969365 up:source unirule:MF_04142 .
_:969366 up:source unirule:MF_04142 .
_:969367 up:source unirule:MF_04142 .
_:969368 up:source unirule:MF_04142 .
_:969369 up:source unirule:MF_04142 .
_:969370 up:source unirule:MF_04142 .
_:969371 up:source unirule:MF_04142 .
_:969372 up:source unirule:MF_04142 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0044423 ,
GO:0106274 ,
keyword:328 ,
keyword:548 ,
keyword:808 ,
keyword:946 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.4.2.31' ;
up:fullName 'NAD--protein ADP-ribosyltransferase modB' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'modB' .
?annotation2 a up:Function_Annotation ;
rdfs:comment "ADP-ribosyltransferase that regulates transcription by ADP-ribosylation of host ribosomal protein S1. Additional identified targets include proteins involved in either translation or cellular metabolism such as elongation factor-Tu or trigger factor. Also reprograms the host's gene-expression system by RNAylating host ribosomal protein S1. ModB can attach NAD-capped RNAs to target proteins post-transcriptionally resulting in covalent RNA-protein conjugates." .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Subcellular_Location_Annotation ;
rdfs:comment 'This protein is injected from the virion into the bacterial cell' .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the Tevenvirinae NAD--protein ADP-ribosyltransferase modA family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Active_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:57540 .
_:969373 a rdf:Statement ;
up:attribution _:969359 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:969374 a rdf:Statement ;
up:attribution _:969360 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:969375 a rdf:Statement ;
up:attribution _:969361 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:969376 a rdf:Statement ;
up:attribution _:969362 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:969377 a rdf:Statement ;
up:attribution _:969363 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:969378 a rdf:Statement ;
up:attribution _:969364 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:969379 a rdf:Statement ;
up:attribution _:969365 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:328 .
_:969380 a rdf:Statement ;
up:attribution _:969366 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:969381 a rdf:Statement ;
up:attribution _:969367 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:969382 a rdf:Statement ;
up:attribution _:969368 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:969383 a rdf:Statement ;
up:attribution _:969369 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0106274 .
_:969384 a rdf:Statement ;
up:attribution _:969370 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044423 .
_:969385 a rdf:Statement ;
up:source unirule:MF_04142 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:969386 a rdf:Statement ;
up:attribution _:969371 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:969387 a rdf:Statement ;
up:source unirule:MF_04142 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:969388 a rdf:Statement ;
up:attribution _:969372 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04142
#Rule MF_04142 Created by:? on:2019-10-08 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04142 .
?thisOrganism rdfs:subClassOf+ taxon:1198136 .
BIND(URI(CONCAT(STR(?this), '#MF_04142a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04142a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04142a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04142a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04142a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch25 faldo:location ?templateMotifSequenceMatchRegionP3942326 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3942328 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39423MF_0414221 .
?templateMotifSequenceMatchRegionP3942326 faldo:begin ?templateMotifSequenceMatchBeginP3942327 .
?templateMotifSequenceMatchBeginP3942327 faldo:position ?templateMotifSequenceMatchBeginPositionP3942322 ;
faldo:reference isoform:P39423-1 .
?templateMotifSequenceProfileAlignmentOperationP3942328 edam:has_input signature:MF_04142 ;
rdf:type edam:operation_0300 .
?targetMotifMatch29 faldo:location ?targetMotifMatchRegionMatch30 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0414232 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39423MF_0414223 .
?targetMotifMatchRegionMatch30 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0414231 .
?targetMotifMatchRegionMatchBeginMF_0414231 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0414224 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0414232 edam:has_input signature:MF_04142 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39423MF_0414221, 1, (STRLEN(?templateMotifCigarP39423MF_0414221) - STRLEN(REPLACE(?templateMotifCigarP39423MF_0414221, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionP3942322) + 1)), '}'), '')))), '[a-z]', '')) AS ?step133) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39423MF_0414223, 1, (STRLEN(?targetMotifMatchCigarP39423MF_0414223) - STRLEN(REPLACE(?targetMotifMatchCigarP39423MF_0414223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39423MF_0414223, 1, (STRLEN(?targetMotifMatchCigarP39423MF_0414223) - STRLEN(REPLACE(?targetMotifMatchCigarP39423MF_0414223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step133), '}'), '')))), '[^-]', ''))) AS ?step234) .
BIND(((?step234 + ?targetMotifMatchRegionMatchBeginPositionMF_0414224) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_04142a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch40 faldo:location ?templateMotifSequenceMatchRegionP3942341 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3942343 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39423MF_0414236 .
?templateMotifSequenceMatchRegionP3942341 faldo:begin ?templateMotifSequenceMatchBeginP3942342 .
?templateMotifSequenceMatchBeginP3942342 faldo:position ?templateMotifSequenceMatchBeginPositionP3942337 ;
faldo:reference isoform:P39423-1 .
?templateMotifSequenceProfileAlignmentOperationP3942343 edam:has_input signature:MF_04142 ;
rdf:type edam:operation_0300 .
?targetMotifMatch44 faldo:location ?targetMotifMatchRegionMatch45 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0414247 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39423MF_0414238 .
?targetMotifMatchRegionMatch45 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0414246 .
?targetMotifMatchRegionMatchBeginMF_0414246 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0414239 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0414247 edam:has_input signature:MF_04142 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39423MF_0414236, 1, (STRLEN(?templateMotifCigarP39423MF_0414236) - STRLEN(REPLACE(?templateMotifCigarP39423MF_0414236, CONCAT('^(?:-*[^-]){', STR(((73 - ?templateMotifSequenceMatchBeginPositionP3942337) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39423MF_0414238, 1, (STRLEN(?targetMotifMatchCigarP39423MF_0414238) - STRLEN(REPLACE(?targetMotifMatchCigarP39423MF_0414238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39423MF_0414238, 1, (STRLEN(?targetMotifMatchCigarP39423MF_0414238) - STRLEN(REPLACE(?targetMotifMatchCigarP39423MF_0414238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0414239) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_04142a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
}
"xsd:string |
