| http://purl.uniprot.org/unirules/MF_04084#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:941526 up:source unirule:MF_04084 .
_:941527 up:fullName 'Stable signal peptide' ;
up:shortName 'SSP' ;
rdf:type up:Structured_Name .
_:941528 up:source unirule:MF_04084 .
_:941529 up:fullName 'Glycoprotein G1' ;
up:shortName 'GP1' ;
rdf:type up:Structured_Name .
_:941530 up:source unirule:MF_04084 .
_:941531 up:fullName 'Glycoprotein G2' ;
up:shortName 'GP2' ;
rdf:type up:Structured_Name .
_:941532 up:source unirule:MF_04084 .
_:941533 up:source unirule:MF_04084 .
_:941534 up:source unirule:MF_04084 .
_:941535 up:source unirule:MF_04084 .
_:941536 up:source unirule:MF_04084 .
_:941537 up:source unirule:MF_04084 .
_:941538 up:source unirule:MF_04084 .
_:941539 up:source unirule:MF_04084 .
_:941540 up:source unirule:MF_04084 .
_:941541 up:source unirule:MF_04084 .
_:941542 up:source unirule:MF_04084 .
_:941543 up:source unirule:MF_04084 .
_:941544 up:source unirule:MF_04084 .
_:941545 up:source unirule:MF_04084 .
_:941546 up:source unirule:MF_04084 .
_:941547 up:source unirule:MF_04084 .
_:941548 up:source unirule:MF_04084 .
_:941549 up:source unirule:MF_04084 .
_:941550 up:source unirule:MF_04084 .
_:941551 up:source unirule:MF_04084 .
_:941552 up:source unirule:MF_04084 .
_:941553 up:source unirule:MF_04084 .
_:941554 up:source unirule:MF_04084 .
_:941555 up:source unirule:MF_04084 .
_:941556 up:source unirule:MF_04084 .
_:941557 up:source unirule:MF_04084 .
_:941558 up:source unirule:MF_04084 .
_:941559 up:source unirule:MF_04084 .
_:941560 up:source unirule:MF_04084 .
_:941561 up:source unirule:MF_04084 .
_:941562 up:source unirule:MF_04084 .
_:941563 up:source unirule:MF_04084 .
_:941564 up:source unirule:MF_04084 .
_:941565 up:source unirule:MF_04084 .
_:941566 up:source unirule:MF_04084 .
_:941567 up:source unirule:MF_04084 .
_:941568 up:source unirule:MF_04084 .
_:941569 up:source unirule:MF_04084 .
_:941570 up:source unirule:MF_04084 .
_:941571 up:source unirule:MF_04084 .
_:941572 up:source unirule:MF_04084 .
_:941573 up:source unirule:MF_04084 .
_:941574 up:source unirule:MF_04084 .
_:941575 up:source unirule:MF_04084 .
_:941576 up:source unirule:MF_04084 .
_:941577 up:source unirule:MF_04084 .
_:941578 up:source unirule:MF_04084 .
_:941579 up:source unirule:MF_04084 .
_:941580 up:source unirule:MF_04084 .
_:941581 up:source unirule:MF_04084 .
_:941582 up:source unirule:MF_04084 .
_:941583 up:source unirule:MF_04084 .
_:941584 up:source unirule:MF_04084 .
_:941585 up:source unirule:MF_04084 .
_:941586 up:source unirule:MF_04084 .
_:941587 up:source unirule:MF_04084 .
_:941588 up:source unirule:MF_04084 .
_:941589 up:source unirule:MF_04084 .
_:941590 up:source unirule:MF_04084 .
_:941591 up:source unirule:MF_04084 .
_:941592 up:source unirule:MF_04084 .
_:941593 up:source unirule:MF_04084 .
_:941594 up:source unirule:MF_04084 .
_:941595 up:source unirule:MF_04084 .
_:941596 up:source unirule:MF_04084 .
_:941597 up:source unirule:MF_04084 .
_:941598 up:source unirule:MF_04084 .
_:941599 up:source unirule:MF_04084 .
_:941600 up:source unirule:MF_04084 .
_:941601 up:source unirule:MF_04084 .
_:941602 up:source unirule:MF_04084 .
_:941603 up:source unirule:MF_04084 .
_:941604 up:source unirule:MF_04084 .
_:941605 up:source unirule:MF_04084 .
_:941606 up:source unirule:MF_04084 .
_:941607 up:source unirule:MF_04084 .
_:941608 up:source unirule:MF_04084 .
_:941609 up:source unirule:MF_04084 .
_:941610 up:source unirule:MF_04084 .
_:941611 up:source unirule:MF_04084 .
_:941612 up:source unirule:MF_04084 .
_:941613 up:source unirule:MF_04084 .
_:941614 up:source unirule:MF_04084 .
_:941615 up:source unirule:MF_04084 .
_:941616 up:source unirule:MF_04084 .
_:941617 up:source unirule:MF_04084 .
_:941618 up:source unirule:MF_04084 .
_:941619 up:source unirule:MF_04084 .
_:941620 up:source unirule:MF_04084 .
_:941621 up:source unirule:MF_04084 .
_:941622 up:source unirule:MF_04084 .
?this up:annotation ?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation14 ,
?annotation19 ,
?annotation24 ,
?annotation25 ,
?annotation26 ,
?annotation27 ,
?annotation28 ,
?annotation29 ;
up:classifiedWith GO:0016020 ,
GO:0019031 ,
GO:0019062 ,
GO:0019065 ,
GO:0020002 ,
GO:0039654 ,
GO:0055036 ,
keyword:1015 ,
keyword:1032 ,
keyword:1038 ,
keyword:1040 ,
keyword:1043 ,
keyword:1133 ,
keyword:1160 ,
keyword:1161 ,
keyword:1162 ,
keyword:1164 ,
keyword:1168 ,
keyword:1170 ,
keyword:261 ,
keyword:325 ,
keyword:449 ,
keyword:472 ,
keyword:479 ,
keyword:519 ,
keyword:812 ,
keyword:862 ,
keyword:945 ,
keyword:946 ;
up:component ?namedpart1 ,
?namedpart2 ,
?namedpart3 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Pre-glycoprotein polyprotein GP complex' ;
up:shortName 'Pre-GP-C' ;
rdf:type up:Structured_Name .
?namedpart1 up:recommendedName _:941527 .
?namedpart2 up:recommendedName _:941529 .
?namedpart3 up:recommendedName _:941531 .
?gene4 skos:prefLabel 'GPC' .
?annotation5 a up:Function_Annotation ;
rdfs:comment '[Stable signal peptide]: Functions as a cleaved signal peptide that is retained as the third component of the GP complex (GP-C). Helps to stabilize the spike complex in its native conformation. The SSP is required for efficient glycoprotein expression, post-translational maturation cleavage of G1 and G2, glycoprotein transport to the cell surface plasma membrane, formation of infectious virus particles, and acid pH-dependent glycoprotein-mediated cell fusion.' .
?annotation6 a up:Function_Annotation ;
rdfs:comment '[Glycoprotein G2]: Forms the virion spikes together with glycoprotein G1. The glycoprotein spike trimers are connected to the underlying matrix. Class I viral fusion protein that directs fusion of viral and host endosomal membranes, leading to delivery of the nucleocapsid into the cytoplasm. Membrane fusion is mediated by irreversible conformational changes induced by acidification.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment '[Stable signal peptide]: Interacts with glycoprotein G2. Part of the GP complex (GP-C) together with glycoprotein G1 and glycoprotein G2. The GP-complex interacts with protein Z, which interacts with ribonucleocapsid; these interactions may induce virion budding.' .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment '[Glycoprotein G2]: Homotrimer. Interacts with the stable signal peptide. In pre-fusion state, G2 homotrimers bind G1 homotrimers via ionic interactions. Part of the GP complex (GP-C) together with glycoprotein G1 and the stable signal peptide. Acidification in the endosome triggers rearrangements, which ultimately leads to a 6 helix bundle formed by the two heptad repeat domains (HR1 and HR2) in post-fusion state. The GP-complex interacts with protein Z, which interacts with ribonucleocapsid; these interactions may induce virion budding.' .
?annotation9 a up:Subcellular_Location_Annotation .
?annotation9li10 up:cellularComponent .
?annotation9li11 up:cellularComponent .
?annotation9li12 up:cellularComponent .
?annotation9li13 up:cellularComponent .
?annotation14 a up:Subcellular_Location_Annotation .
?annotation14li15 up:cellularComponent .
?annotation14li16 up:cellularComponent .
?annotation14li17 up:cellularComponent .
?annotation14li18 up:cellularComponent .
?annotation19 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Binding to the stable signal peptide masks endogenous ER localization signals in the cytoplasmic domain of G2 to ensure that only the fully assembled, tripartite GP complex is transported for virion assembly' .
?annotation19li20 up:cellularComponent .
?annotation19li21 up:cellularComponent .
?annotation19li22 up:cellularComponent .
?annotation19li23 up:cellularComponent .
?annotation24 a up:Domain_Annotation ;
rdfs:comment '[Stable signal peptide]: The N-terminus is localized at the extracellular side of the GP-C, with a part embedded in the membrane probably.' .
?annotation25 a up:Domain_Annotation ;
rdfs:comment '[Glycoprotein G2]: Contains 1 fusion peptide at the N-terminus, 2 heptad repeats domains HR1 and HR2 and, at the C-terminus, a cytoplasmic domain that plays a role in ER location. Also contains a zinc-binding domain that allows SSP retention in the GPC complex by accepting a cysteine from SSP as the fourth ligand.' .
?annotation26 a up:PTM_Annotation ;
rdfs:comment '[Pre-glycoprotein polyprotein GP complex]: Specific enzymatic cleavages in vivo yield mature proteins. GP-C polyprotein is cleaved in the endoplasmic reticulum by the host protease MBTPS1. Only cleaved glycoprotein is incorporated into virions.' .
?annotation27 a up:PTM_Annotation ;
rdfs:comment '[Stable signal peptide]: The SSP remains stably associated with the GP complex following cleavage by signal peptidase and plays crucial roles in the trafficking of GP through the secretory pathway.' .
?annotation28 a up:PTM_Annotation ;
rdfs:comment '[Stable signal peptide]: Myristoylation is necessary for GP2-mediated fusion activity.' .
?annotation29 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the arenaviridae GPC protein family.' .
?pfs33 up:annotation ?annotation34 ,
?annotation39 ,
?annotation44 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Binding to the host receptor LAMP1' .
?pfsb35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Binding to the host receptor LAMP1' .
?pfsb40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Binding to the host receptor LAMP1' .
?pfsb45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:29105 .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation .
?pfsb58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf chebi:29105 .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
up:ligand ?ligand67 ;
rdf:type up:Binding_Site_Annotation .
?pfsb65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?ligand67 rdfs:subClassOf chebi:29105 .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
up:ligand ?ligand74 ;
rdf:type up:Binding_Site_Annotation .
?pfsb72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand74 rdfs:subClassOf chebi:29105 .
?pfs77 up:annotation ?annotation78 .
?annotation78 faldo:begin ?pfsb79 ;
faldo:end ?pfse80 ;
up:ligand ?ligand81 ;
rdf:type up:Binding_Site_Annotation .
?pfsb79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfse80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?ligand81 rdfs:subClassOf chebi:29105 .
?pfs84 up:annotation ?annotation85 .
?annotation85 faldo:begin ?pfsb86 ;
faldo:end ?pfse87 ;
up:ligand ?ligand88 ;
rdf:type up:Binding_Site_Annotation .
?pfsb86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?pfse87 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?ligand88 rdfs:subClassOf chebi:29105 .
?pfs91 up:annotation ?annotation92 .
?annotation92 faldo:begin ?pfsb93 ;
faldo:end ?pfse94 ;
up:ligand ?ligand95 ;
rdf:type up:Binding_Site_Annotation .
?pfsb93 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfse94 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?ligand95 rdfs:subClassOf chebi:29105 .
?pfs98 up:annotation ?annotation99 .
?annotation99 faldo:begin ?pfsb100 ;
faldo:end ?pfse101 ;
up:ligand ?ligand102 ;
rdf:type up:Binding_Site_Annotation .
?pfsb100 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfse101 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
?ligand102 rdfs:subClassOf chebi:29105 .
?pfs105 up:annotation ?annotation106 .
?annotation106 faldo:begin ?pfsb107 ;
faldo:end ?pfse108 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Pre-glycoprotein polyprotein GP complex' .
?pfsb107 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?pfse108 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?pfs111 up:annotation ?annotation112 .
?annotation112 faldo:begin ?pfsb113 ;
faldo:end ?pfse114 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Stable signal peptide' .
?pfsb113 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
?pfse114 faldo:position ?thisPositionOn116 ;
rdf:type faldo:ExactPosition .
?pfs117 up:annotation ?annotation118 .
?annotation118 faldo:begin ?pfsb119 ;
faldo:end ?pfse120 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Glycoprotein G1' .
?pfsb119 faldo:position ?thisPositionOn121 ;
rdf:type faldo:ExactPosition .
?pfse120 faldo:position ?thisPositionOn122 ;
rdf:type faldo:ExactPosition .
?pfs123 up:annotation ?annotation124 .
?annotation124 faldo:begin ?pfsb125 ;
faldo:end ?pfse126 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Glycoprotein G2' .
?pfsb125 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?pfse126 faldo:position ?thisPositionOn128 ;
rdf:type faldo:ExactPosition .
?pfs129 up:annotation ?annotation130 .
?annotation130 faldo:begin ?pfsb131 ;
faldo:end ?pfse132 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Extracellular' .
?pfsb131 faldo:position ?thisPositionOn133 ;
rdf:type faldo:ExactPosition .
?pfse132 faldo:position ?thisPositionOn134 ;
rdf:type faldo:ExactPosition .
?pfs135 up:annotation ?annotation136 .
?annotation136 faldo:begin ?pfsb137 ;
faldo:end ?pfse138 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb137 faldo:position ?thisPositionOn139 ;
rdf:type faldo:ExactPosition .
?pfse138 faldo:position ?thisPositionOn140 ;
rdf:type faldo:ExactPosition .
?pfs141 up:annotation ?annotation142 .
?annotation142 faldo:begin ?pfsb143 ;
faldo:end ?pfse144 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb143 faldo:position ?thisPositionOn145 ;
rdf:type faldo:ExactPosition .
?pfse144 faldo:position ?thisPositionOn146 ;
rdf:type faldo:ExactPosition .
?pfs147 up:annotation ?annotation148 .
?annotation148 faldo:begin ?pfsb149 ;
faldo:end ?pfse150 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Extracellular' .
?pfsb149 faldo:position ?thisPositionOn151 ;
rdf:type faldo:ExactPosition .
?pfse150 faldo:position ?thisPositionOn152 ;
rdf:type faldo:ExactPosition .
?pfs153 up:annotation ?annotation154 .
?annotation154 faldo:begin ?pfsb155 ;
faldo:end ?pfse156 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb155 faldo:position ?thisPositionOn157 ;
rdf:type faldo:ExactPosition .
?pfse156 faldo:position ?thisPositionOn158 ;
rdf:type faldo:ExactPosition .
?pfs159 up:annotation ?annotation160 .
?annotation160 faldo:begin ?pfsb161 ;
faldo:end ?pfse162 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb161 faldo:position ?thisPositionOn163 ;
rdf:type faldo:ExactPosition .
?pfse162 faldo:position ?thisPositionOn164 ;
rdf:type faldo:ExactPosition .
?pfs165 up:annotation ?annotation166 .
?annotation166 faldo:begin ?pfsb167 ;
faldo:end ?pfse168 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage; by host signal peptidase' .
?pfsb167 faldo:position ?thisPositionOn169 ;
rdf:type faldo:ExactPosition .
?pfse168 faldo:position ?thisPositionOn170 ;
rdf:type faldo:ExactPosition .
?pfs171 up:annotation ?annotation172 .
?annotation172 faldo:begin ?pfsb173 ;
faldo:end ?pfse174 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage; by host MBTPS1' .
?pfsb173 faldo:position ?thisPositionOn175 ;
rdf:type faldo:ExactPosition .
?pfse174 faldo:position ?thisPositionOn176 ;
rdf:type faldo:ExactPosition .
?pfs177 up:annotation ?annotation178 .
?annotation178 faldo:begin ?pfsb179 ;
faldo:end ?pfse180 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Fusion' .
?pfsb179 faldo:position ?thisPositionOn181 ;
rdf:type faldo:ExactPosition .
?pfse180 faldo:position ?thisPositionOn182 ;
rdf:type faldo:ExactPosition .
?pfs183 up:annotation ?annotation184 .
?annotation184 faldo:begin ?pfsb185 ;
faldo:end ?pfse186 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'HR1' .
?pfsb185 faldo:position ?thisPositionOn187 ;
rdf:type faldo:ExactPosition .
?pfse186 faldo:position ?thisPositionOn188 ;
rdf:type faldo:ExactPosition .
?pfs189 up:annotation ?annotation190 .
?annotation190 faldo:begin ?pfsb191 ;
faldo:end ?pfse192 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'HR2' .
?pfsb191 faldo:position ?thisPositionOn193 ;
rdf:type faldo:ExactPosition .
?pfse192 faldo:position ?thisPositionOn194 ;
rdf:type faldo:ExactPosition .
?pfs195 up:annotation ?annotation196 .
?annotation196 faldo:begin ?pfsb197 ;
faldo:end ?pfse198 ;
rdf:type up:Initiator_Methionine_Annotation ;
rdfs:comment 'Removed; by host' .
?pfsb197 faldo:position ?thisPositionOn199 ;
rdf:type faldo:ExactPosition .
?pfse198 faldo:position ?thisPositionOn200 ;
rdf:type faldo:ExactPosition .
?pfs201 up:annotation ?annotation202 .
?annotation202 faldo:begin ?pfsb203 ;
faldo:end ?pfse204 ;
rdf:type up:Lipidation_Annotation ;
rdfs:comment 'N-myristoyl glycine; by host' .
?pfsb203 faldo:position ?thisPositionOn205 ;
rdf:type faldo:ExactPosition .
?pfse204 faldo:position ?thisPositionOn206 ;
rdf:type faldo:ExactPosition .
?pfs207 up:annotation ?annotation208 .
?annotation208 faldo:begin ?pfsb209 ;
faldo:end ?pfse210 ;
rdf:type up:Glycosylation_Annotation ;
rdfs:comment 'N-linked (GlcNAc...) asparagine; by host' .
?pfsb209 faldo:position ?thisPositionOn211 ;
rdf:type faldo:ExactPosition .
?pfse210 faldo:position ?thisPositionOn212 ;
rdf:type faldo:ExactPosition .
?pfs213 up:annotation ?annotation214 .
?annotation214 faldo:begin ?pfsb215 ;
faldo:end ?pfse216 ;
rdf:type up:Glycosylation_Annotation ;
rdfs:comment 'N-linked (GlcNAc...) asparagine; by host' .
?pfsb215 faldo:position ?thisPositionOn217 ;
rdf:type faldo:ExactPosition .
?pfse216 faldo:position ?thisPositionOn218 ;
rdf:type faldo:ExactPosition .
?pfs219 up:annotation ?annotation220 .
?annotation220 faldo:begin ?pfsb221 ;
faldo:end ?pfse222 ;
rdf:type up:Glycosylation_Annotation ;
rdfs:comment 'N-linked (GlcNAc...) asparagine; by host' .
?pfsb221 faldo:position ?thisPositionOn223 ;
rdf:type faldo:ExactPosition .
?pfse222 faldo:position ?thisPositionOn224 ;
rdf:type faldo:ExactPosition .
?pfs225 up:annotation ?annotation226 .
?annotation226 faldo:begin ?pfsb227 ;
faldo:end ?pfse228 ;
rdf:type up:Glycosylation_Annotation ;
rdfs:comment 'N-linked (GlcNAc...) asparagine; by host' .
?pfsb227 faldo:position ?thisPositionOn229 ;
rdf:type faldo:ExactPosition .
?pfse228 faldo:position ?thisPositionOn230 ;
rdf:type faldo:ExactPosition .
?pfs231 up:annotation ?annotation232 .
?annotation232 faldo:begin ?pfsb233 ;
faldo:end ?pfse234 ;
rdf:type up:Glycosylation_Annotation ;
rdfs:comment 'N-linked (GlcNAc...) asparagine; by host' .
?pfsb233 faldo:position ?thisPositionOn235 ;
rdf:type faldo:ExactPosition .
?pfse234 faldo:position ?thisPositionOn236 ;
rdf:type faldo:ExactPosition .
?pfs237 up:annotation ?annotation238 .
?annotation238 faldo:begin ?pfsb239 ;
faldo:end ?pfse240 ;
rdf:type up:Glycosylation_Annotation ;
rdfs:comment 'N-linked (GlcNAc...) asparagine; by host' .
?pfsb239 faldo:position ?thisPositionOn241 ;
rdf:type faldo:ExactPosition .
?pfse240 faldo:position ?thisPositionOn242 ;
rdf:type faldo:ExactPosition .
?pfs243 up:annotation ?annotation244 .
?annotation244 faldo:begin ?pfsb245 ;
faldo:end ?pfse246 ;
rdf:type up:Glycosylation_Annotation ;
rdfs:comment 'N-linked (GlcNAc...) asparagine; by host' .
?pfsb245 faldo:position ?thisPositionOn247 ;
rdf:type faldo:ExactPosition .
?pfse246 faldo:position ?thisPositionOn248 ;
rdf:type faldo:ExactPosition .
?pfs249 up:annotation ?annotation250 .
?annotation250 faldo:begin ?pfsb251 ;
faldo:end ?pfse252 ;
rdf:type up:Glycosylation_Annotation ;
rdfs:comment 'N-linked (GlcNAc...) asparagine; by host' .
?pfsb251 faldo:position ?thisPositionOn253 ;
rdf:type faldo:ExactPosition .
?pfse252 faldo:position ?thisPositionOn254 ;
rdf:type faldo:ExactPosition .
?pfs255 up:annotation ?annotation256 .
?annotation256 faldo:begin ?pfsb257 ;
faldo:end ?pfse258 ;
rdf:type up:Glycosylation_Annotation ;
rdfs:comment 'N-linked (GlcNAc...) asparagine; by host' .
?pfsb257 faldo:position ?thisPositionOn259 ;
rdf:type faldo:ExactPosition .
?pfse258 faldo:position ?thisPositionOn260 ;
rdf:type faldo:ExactPosition .
?pfs261 up:annotation ?annotation262 .
?annotation262 faldo:begin ?pfsb263 ;
faldo:end ?pfse264 ;
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up:attribution _:941614 ;
rdf:subject ?pfs267 ;
rdf:predicate up:annotation ;
rdf:object ?annotation268 .
_:941748 a rdf:Statement ;
up:source unirule:MF_04084 ;
rdf:subject ?pfs273 ;
rdf:predicate up:annotation ;
rdf:object ?annotation274 .
_:941749 a rdf:Statement ;
up:attribution _:941615 ;
rdf:subject ?pfs273 ;
rdf:predicate up:annotation ;
rdf:object ?annotation274 .
_:941750 a rdf:Statement ;
up:source unirule:MF_04084 ;
rdf:subject ?pfs279 ;
rdf:predicate up:annotation ;
rdf:object ?annotation280 .
_:941751 a rdf:Statement ;
up:attribution _:941616 ;
rdf:subject ?pfs279 ;
rdf:predicate up:annotation ;
rdf:object ?annotation280 .
_:941752 a rdf:Statement ;
up:source unirule:MF_04084 ;
rdf:subject ?pfs285 ;
rdf:predicate up:annotation ;
rdf:object ?annotation286 .
_:941753 a rdf:Statement ;
up:attribution _:941617 ;
rdf:subject ?pfs285 ;
rdf:predicate up:annotation ;
rdf:object ?annotation286 .
_:941754 a rdf:Statement ;
up:source unirule:MF_04084 ;
rdf:subject ?pfs291 ;
rdf:predicate up:annotation ;
rdf:object ?annotation292 .
_:941755 a rdf:Statement ;
up:attribution _:941618 ;
rdf:subject ?pfs291 ;
rdf:predicate up:annotation ;
rdf:object ?annotation292 .
_:941756 a rdf:Statement ;
up:source unirule:MF_04084 ;
rdf:subject ?pfs297 ;
rdf:predicate up:annotation ;
rdf:object ?annotation298 .
_:941757 a rdf:Statement ;
up:attribution _:941619 ;
rdf:subject ?pfs297 ;
rdf:predicate up:annotation ;
rdf:object ?annotation298 .
_:941758 a rdf:Statement ;
up:source unirule:MF_04084 ;
rdf:subject ?pfs303 ;
rdf:predicate up:annotation ;
rdf:object ?annotation304 .
_:941759 a rdf:Statement ;
up:attribution _:941620 ;
rdf:subject ?pfs303 ;
rdf:predicate up:annotation ;
rdf:object ?annotation304 .
_:941760 a rdf:Statement ;
up:source unirule:MF_04084 ;
rdf:subject ?pfs309 ;
rdf:predicate up:annotation ;
rdf:object ?annotation310 .
_:941761 a rdf:Statement ;
up:attribution _:941621 ;
rdf:subject ?pfs309 ;
rdf:predicate up:annotation ;
rdf:object ?annotation310 .
_:941762 a rdf:Statement ;
up:source unirule:MF_04084 ;
rdf:subject ?pfs315 ;
rdf:predicate up:annotation ;
rdf:object ?annotation316 .
_:941763 a rdf:Statement ;
up:attribution _:941622 ;
rdf:subject ?pfs315 ;
rdf:predicate up:annotation ;
rdf:object ?annotation316 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04084
#Rule MF_04084 Created by:? on:2018-01-12 Modified by:Chantal Hulo on:2025-02-11
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04084 .
?thisOrganism rdfs:subClassOf+ taxon:11617 .
BIND(URI(CONCAT(STR(?this), '#MF_04084a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a1')) AS ?namedpart1) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a2')) AS ?namedpart2) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a3')) AS ?namedpart3) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a14')) AS ?annotation14) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a19')) AS ?annotation19) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a24')) AS ?annotation24) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a25')) AS ?annotation25) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a26')) AS ?annotation26) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a27')) AS ?annotation27) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a28')) AS ?annotation28) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a29')) AS ?annotation29) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch327 faldo:location ?templateMotifSequenceMatchRegionP08669328 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669330 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084323 .
?templateMotifSequenceMatchRegionP08669328 faldo:begin ?templateMotifSequenceMatchBeginP08669329 .
?templateMotifSequenceMatchBeginP08669329 faldo:position ?templateMotifSequenceMatchBeginPositionP08669324 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669330 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch331 faldo:location ?targetMotifMatchRegionMatch332 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084334 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084325 .
?targetMotifMatchRegionMatch332 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084333 .
?targetMotifMatchRegionMatchBeginMF_04084333 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084326 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084334 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
?this up:organism ?thisOrganism .
?thisOrganism up:scientificName ?name321 .
FILTER (CONTAINS(?containsName322, ?name321)) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084323, 1, (STRLEN(?templateMotifCigarP08669MF_04084323) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084323, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionP08669324) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1335) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084325, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084325) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1335), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084325, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084325) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1335), '}'), '')))), '[^-]', ''))) AS ?step2336) .
BIND(((?step2336 + ?targetMotifMatchRegionMatchBeginPositionMF_04084326) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t337) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084323, 1, (STRLEN(?templateMotifCigarP08669MF_04084323) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084323, CONCAT('^(?:-*[^-]){', STR(((93 - ?templateMotifSequenceMatchBeginPositionP08669324) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1338) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084325, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084325) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1338), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084325, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084325) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1338), '}'), '')))), '[^-]', ''))) AS ?step2339) .
BIND(((?step2339 + ?targetMotifMatchRegionMatchBeginPositionMF_04084326) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t340) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084323, 1, (STRLEN(?templateMotifCigarP08669MF_04084323) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084323, CONCAT('^(?:-*[^-]){', STR(((230 - ?templateMotifSequenceMatchBeginPositionP08669324) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1341) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084325, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084325) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1341), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084325, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084325) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1341), '}'), '')))), '[^-]', ''))) AS ?step2342) .
BIND(((?step2342 + ?targetMotifMatchRegionMatchBeginPositionMF_04084326) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t343) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'H')) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch348 faldo:location ?templateMotifSequenceMatchRegionP26313349 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26313351 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26313MF_04084344 .
?templateMotifSequenceMatchRegionP26313349 faldo:begin ?templateMotifSequenceMatchBeginP26313350 .
?templateMotifSequenceMatchBeginP26313350 faldo:position ?templateMotifSequenceMatchBeginPositionP26313345 ;
faldo:reference isoform:P26313-1 .
?templateMotifSequenceProfileAlignmentOperationP26313351 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch352 faldo:location ?targetMotifMatchRegionMatch353 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084355 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26313MF_04084346 .
?targetMotifMatchRegionMatch353 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084354 .
?targetMotifMatchRegionMatchBeginMF_04084354 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084347 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084355 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26313MF_04084344, 1, (STRLEN(?templateMotifCigarP26313MF_04084344) - STRLEN(REPLACE(?templateMotifCigarP26313MF_04084344, CONCAT('^(?:-*[^-]){', STR(((57 - ?templateMotifSequenceMatchBeginPositionP26313345) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1356) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26313MF_04084346, 1, (STRLEN(?targetMotifMatchCigarP26313MF_04084346) - STRLEN(REPLACE(?targetMotifMatchCigarP26313MF_04084346, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1356), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26313MF_04084346, 1, (STRLEN(?targetMotifMatchCigarP26313MF_04084346) - STRLEN(REPLACE(?targetMotifMatchCigarP26313MF_04084346, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1356), '}'), '')))), '[^-]', ''))) AS ?step2357) .
BIND(((?step2357 + ?targetMotifMatchRegionMatchBeginPositionMF_04084347) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs2t358) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch363 faldo:location ?templateMotifSequenceMatchRegionP26313364 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26313366 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26313MF_04084359 .
?templateMotifSequenceMatchRegionP26313364 faldo:begin ?templateMotifSequenceMatchBeginP26313365 .
?templateMotifSequenceMatchBeginP26313365 faldo:position ?templateMotifSequenceMatchBeginPositionP26313360 ;
faldo:reference isoform:P26313-1 .
?templateMotifSequenceProfileAlignmentOperationP26313366 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch367 faldo:location ?targetMotifMatchRegionMatch368 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084370 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26313MF_04084361 .
?targetMotifMatchRegionMatch368 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084369 .
?targetMotifMatchRegionMatchBeginMF_04084369 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084362 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084370 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26313MF_04084359, 1, (STRLEN(?templateMotifCigarP26313MF_04084359) - STRLEN(REPLACE(?templateMotifCigarP26313MF_04084359, CONCAT('^(?:-*[^-]){', STR(((447 - ?templateMotifSequenceMatchBeginPositionP26313360) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1371) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26313MF_04084361, 1, (STRLEN(?targetMotifMatchCigarP26313MF_04084361) - STRLEN(REPLACE(?targetMotifMatchCigarP26313MF_04084361, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1371), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26313MF_04084361, 1, (STRLEN(?targetMotifMatchCigarP26313MF_04084361) - STRLEN(REPLACE(?targetMotifMatchCigarP26313MF_04084361, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1371), '}'), '')))), '[^-]', ''))) AS ?step2372) .
BIND(((?step2372 + ?targetMotifMatchRegionMatchBeginPositionMF_04084362) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs2t373) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch378 faldo:location ?templateMotifSequenceMatchRegionP26313379 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26313381 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26313MF_04084374 .
?templateMotifSequenceMatchRegionP26313379 faldo:begin ?templateMotifSequenceMatchBeginP26313380 .
?templateMotifSequenceMatchBeginP26313380 faldo:position ?templateMotifSequenceMatchBeginPositionP26313375 ;
faldo:reference isoform:P26313-1 .
?templateMotifSequenceProfileAlignmentOperationP26313381 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch382 faldo:location ?targetMotifMatchRegionMatch383 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084385 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26313MF_04084376 .
?targetMotifMatchRegionMatch383 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084384 .
?targetMotifMatchRegionMatchBeginMF_04084384 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084377 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084385 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26313MF_04084374, 1, (STRLEN(?templateMotifCigarP26313MF_04084374) - STRLEN(REPLACE(?templateMotifCigarP26313MF_04084374, CONCAT('^(?:-*[^-]){', STR(((449 - ?templateMotifSequenceMatchBeginPositionP26313375) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1386) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26313MF_04084376, 1, (STRLEN(?targetMotifMatchCigarP26313MF_04084376) - STRLEN(REPLACE(?targetMotifMatchCigarP26313MF_04084376, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1386), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26313MF_04084376, 1, (STRLEN(?targetMotifMatchCigarP26313MF_04084376) - STRLEN(REPLACE(?targetMotifMatchCigarP26313MF_04084376, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1386), '}'), '')))), '[^-]', ''))) AS ?step2387) .
BIND(((?step2387 + ?targetMotifMatchRegionMatchBeginPositionMF_04084377) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs2t388) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse66) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch393 faldo:location ?templateMotifSequenceMatchRegionP26313394 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26313396 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26313MF_04084389 .
?templateMotifSequenceMatchRegionP26313394 faldo:begin ?templateMotifSequenceMatchBeginP26313395 .
?templateMotifSequenceMatchBeginP26313395 faldo:position ?templateMotifSequenceMatchBeginPositionP26313390 ;
faldo:reference isoform:P26313-1 .
?templateMotifSequenceProfileAlignmentOperationP26313396 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch397 faldo:location ?targetMotifMatchRegionMatch398 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084400 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26313MF_04084391 .
?targetMotifMatchRegionMatch398 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084399 .
?targetMotifMatchRegionMatchBeginMF_04084399 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084392 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084400 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26313MF_04084389, 1, (STRLEN(?templateMotifCigarP26313MF_04084389) - STRLEN(REPLACE(?templateMotifCigarP26313MF_04084389, CONCAT('^(?:-*[^-]){', STR(((455 - ?templateMotifSequenceMatchBeginPositionP26313390) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1401) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26313MF_04084391, 1, (STRLEN(?targetMotifMatchCigarP26313MF_04084391) - STRLEN(REPLACE(?targetMotifMatchCigarP26313MF_04084391, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1401), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26313MF_04084391, 1, (STRLEN(?targetMotifMatchCigarP26313MF_04084391) - STRLEN(REPLACE(?targetMotifMatchCigarP26313MF_04084391, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1401), '}'), '')))), '[^-]', ''))) AS ?step2402) .
BIND(((?step2402 + ?targetMotifMatchRegionMatchBeginPositionMF_04084392) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs2t403) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch408 faldo:location ?templateMotifSequenceMatchRegionP26313409 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26313411 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26313MF_04084404 .
?templateMotifSequenceMatchRegionP26313409 faldo:begin ?templateMotifSequenceMatchBeginP26313410 .
?templateMotifSequenceMatchBeginP26313410 faldo:position ?templateMotifSequenceMatchBeginPositionP26313405 ;
faldo:reference isoform:P26313-1 .
?templateMotifSequenceProfileAlignmentOperationP26313411 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch412 faldo:location ?targetMotifMatchRegionMatch413 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084415 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26313MF_04084406 .
?targetMotifMatchRegionMatch413 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084414 .
?targetMotifMatchRegionMatchBeginMF_04084414 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084407 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084415 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26313MF_04084404, 1, (STRLEN(?templateMotifCigarP26313MF_04084404) - STRLEN(REPLACE(?templateMotifCigarP26313MF_04084404, CONCAT('^(?:-*[^-]){', STR(((459 - ?templateMotifSequenceMatchBeginPositionP26313405) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1416) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26313MF_04084406, 1, (STRLEN(?targetMotifMatchCigarP26313MF_04084406) - STRLEN(REPLACE(?targetMotifMatchCigarP26313MF_04084406, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1416), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26313MF_04084406, 1, (STRLEN(?targetMotifMatchCigarP26313MF_04084406) - STRLEN(REPLACE(?targetMotifMatchCigarP26313MF_04084406, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1416), '}'), '')))), '[^-]', ''))) AS ?step2417) .
BIND(((?step2417 + ?targetMotifMatchRegionMatchBeginPositionMF_04084407) - 1) AS ?thisPositionOn82) .
BIND(?thisPositionOn82 AS ?thisPositionOn83) .
BIND(?this AS ?pfs2t418) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse80) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a78')) AS ?annotation78) .
BIND(?this AS ?pfs77) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch423 faldo:location ?templateMotifSequenceMatchRegionP26313424 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26313426 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26313MF_04084419 .
?templateMotifSequenceMatchRegionP26313424 faldo:begin ?templateMotifSequenceMatchBeginP26313425 .
?templateMotifSequenceMatchBeginP26313425 faldo:position ?templateMotifSequenceMatchBeginPositionP26313420 ;
faldo:reference isoform:P26313-1 .
?templateMotifSequenceProfileAlignmentOperationP26313426 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch427 faldo:location ?targetMotifMatchRegionMatch428 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084430 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26313MF_04084421 .
?targetMotifMatchRegionMatch428 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084429 .
?targetMotifMatchRegionMatchBeginMF_04084429 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084422 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084430 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26313MF_04084419, 1, (STRLEN(?templateMotifCigarP26313MF_04084419) - STRLEN(REPLACE(?templateMotifCigarP26313MF_04084419, CONCAT('^(?:-*[^-]){', STR(((467 - ?templateMotifSequenceMatchBeginPositionP26313420) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1431) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26313MF_04084421, 1, (STRLEN(?targetMotifMatchCigarP26313MF_04084421) - STRLEN(REPLACE(?targetMotifMatchCigarP26313MF_04084421, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1431), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26313MF_04084421, 1, (STRLEN(?targetMotifMatchCigarP26313MF_04084421) - STRLEN(REPLACE(?targetMotifMatchCigarP26313MF_04084421, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1431), '}'), '')))), '[^-]', ''))) AS ?step2432) .
BIND(((?step2432 + ?targetMotifMatchRegionMatchBeginPositionMF_04084422) - 1) AS ?thisPositionOn89) .
BIND(?thisPositionOn89 AS ?thisPositionOn90) .
BIND(?this AS ?pfs2t433) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse87) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn89, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a85')) AS ?annotation85) .
BIND(?this AS ?pfs84) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch438 faldo:location ?templateMotifSequenceMatchRegionP26313439 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26313441 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26313MF_04084434 .
?templateMotifSequenceMatchRegionP26313439 faldo:begin ?templateMotifSequenceMatchBeginP26313440 .
?templateMotifSequenceMatchBeginP26313440 faldo:position ?templateMotifSequenceMatchBeginPositionP26313435 ;
faldo:reference isoform:P26313-1 .
?templateMotifSequenceProfileAlignmentOperationP26313441 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch442 faldo:location ?targetMotifMatchRegionMatch443 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084445 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26313MF_04084436 .
?targetMotifMatchRegionMatch443 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084444 .
?targetMotifMatchRegionMatchBeginMF_04084444 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084437 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084445 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26313MF_04084434, 1, (STRLEN(?templateMotifCigarP26313MF_04084434) - STRLEN(REPLACE(?templateMotifCigarP26313MF_04084434, CONCAT('^(?:-*[^-]){', STR(((469 - ?templateMotifSequenceMatchBeginPositionP26313435) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1446) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26313MF_04084436, 1, (STRLEN(?targetMotifMatchCigarP26313MF_04084436) - STRLEN(REPLACE(?targetMotifMatchCigarP26313MF_04084436, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1446), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26313MF_04084436, 1, (STRLEN(?targetMotifMatchCigarP26313MF_04084436) - STRLEN(REPLACE(?targetMotifMatchCigarP26313MF_04084436, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1446), '}'), '')))), '[^-]', ''))) AS ?step2447) .
BIND(((?step2447 + ?targetMotifMatchRegionMatchBeginPositionMF_04084437) - 1) AS ?thisPositionOn96) .
BIND(?thisPositionOn96 AS ?thisPositionOn97) .
BIND(?this AS ?pfs2t448) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse94) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn96, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a92')) AS ?annotation92) .
BIND(?this AS ?pfs91) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch453 faldo:location ?templateMotifSequenceMatchRegionP26313454 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26313456 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26313MF_04084449 .
?templateMotifSequenceMatchRegionP26313454 faldo:begin ?templateMotifSequenceMatchBeginP26313455 .
?templateMotifSequenceMatchBeginP26313455 faldo:position ?templateMotifSequenceMatchBeginPositionP26313450 ;
faldo:reference isoform:P26313-1 .
?templateMotifSequenceProfileAlignmentOperationP26313456 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch457 faldo:location ?targetMotifMatchRegionMatch458 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084460 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26313MF_04084451 .
?targetMotifMatchRegionMatch458 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084459 .
?targetMotifMatchRegionMatchBeginMF_04084459 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084452 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084460 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26313MF_04084449, 1, (STRLEN(?templateMotifCigarP26313MF_04084449) - STRLEN(REPLACE(?templateMotifCigarP26313MF_04084449, CONCAT('^(?:-*[^-]){', STR(((485 - ?templateMotifSequenceMatchBeginPositionP26313450) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1461) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26313MF_04084451, 1, (STRLEN(?targetMotifMatchCigarP26313MF_04084451) - STRLEN(REPLACE(?targetMotifMatchCigarP26313MF_04084451, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1461), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26313MF_04084451, 1, (STRLEN(?targetMotifMatchCigarP26313MF_04084451) - STRLEN(REPLACE(?targetMotifMatchCigarP26313MF_04084451, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1461), '}'), '')))), '[^-]', ''))) AS ?step2462) .
BIND(((?step2462 + ?targetMotifMatchRegionMatchBeginPositionMF_04084452) - 1) AS ?thisPositionOn103) .
BIND(?thisPositionOn103 AS ?thisPositionOn104) .
BIND(?this AS ?pfs2t463) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse101) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn103, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a99')) AS ?annotation99) .
BIND(?this AS ?pfs98) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch468 faldo:location ?templateMotifSequenceMatchRegionP08669469 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669471 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084464 .
?templateMotifSequenceMatchRegionP08669469 faldo:begin ?templateMotifSequenceMatchBeginP08669470 .
?templateMotifSequenceMatchBeginP08669470 faldo:position ?templateMotifSequenceMatchBeginPositionP08669465 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669471 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch472 faldo:location ?targetMotifMatchRegionMatch473 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084475 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084466 .
?targetMotifMatchRegionMatch473 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084474 .
?targetMotifMatchRegionMatchBeginMF_04084474 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084467 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084475 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084464, 1, (STRLEN(?templateMotifCigarP08669MF_04084464) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084464, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP08669465) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1476) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084466, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084466) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084466, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1476), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084466, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084466) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084466, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1476), '}'), '')))), '[^-]', ''))) AS ?step2477) .
BIND(((?step2477 + ?targetMotifMatchRegionMatchBeginPositionMF_04084467) - 1) AS ?thisPositionOn109) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn110) .
BIND(?this AS ?pfs3t478) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfsb107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfse108) .
FILTER ((BOUND(?thisPositionOn109) && BOUND(?thisPositionOn110))) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a106')) AS ?annotation106) .
BIND(?this AS ?pfs105) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch483 faldo:location ?templateMotifSequenceMatchRegionP08669484 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669486 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084479 .
?templateMotifSequenceMatchRegionP08669484 faldo:begin ?templateMotifSequenceMatchBeginP08669485 .
?templateMotifSequenceMatchBeginP08669485 faldo:position ?templateMotifSequenceMatchBeginPositionP08669480 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669486 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch487 faldo:location ?targetMotifMatchRegionMatch488 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084490 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084481 .
?targetMotifMatchRegionMatch488 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084489 .
?targetMotifMatchRegionMatchBeginMF_04084489 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084482 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084490 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084479, 1, (STRLEN(?templateMotifCigarP08669MF_04084479) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084479, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP08669480) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1491) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084481, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084481) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084481, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1491), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084481, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084481) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084481, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1491), '}'), '')))), '[^-]', ''))) AS ?step2492) .
BIND(((?step2492 + ?targetMotifMatchRegionMatchBeginPositionMF_04084482) - 1) AS ?thisPositionOn115) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084479, 1, (STRLEN(?templateMotifCigarP08669MF_04084479) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084479, CONCAT('^(?:-*[^-]){', STR(((58 - ?templateMotifSequenceMatchBeginPositionP08669480) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1493) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084481, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084481) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084481, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1493), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084481, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084481) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084481, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1493), '}'), '')))), '[^-]', ''))) AS ?step2494) .
BIND(((?step2494 + ?targetMotifMatchRegionMatchBeginPositionMF_04084482) - 1) AS ?thisPositionOn116) .
BIND(?this AS ?pfs3t495) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfsb113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfse114) .
FILTER ((BOUND(?thisPositionOn115) && BOUND(?thisPositionOn116))) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a112')) AS ?annotation112) .
BIND(?this AS ?pfs111) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch500 faldo:location ?templateMotifSequenceMatchRegionP08669501 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669503 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084496 .
?templateMotifSequenceMatchRegionP08669501 faldo:begin ?templateMotifSequenceMatchBeginP08669502 .
?templateMotifSequenceMatchBeginP08669502 faldo:position ?templateMotifSequenceMatchBeginPositionP08669497 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669503 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch504 faldo:location ?targetMotifMatchRegionMatch505 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084507 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084498 .
?targetMotifMatchRegionMatch505 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084506 .
?targetMotifMatchRegionMatchBeginMF_04084506 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084499 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084507 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084496, 1, (STRLEN(?templateMotifCigarP08669MF_04084496) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084496, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionP08669497) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1508) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084498, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084498) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084498, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1508), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084498, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084498) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084498, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1508), '}'), '')))), '[^-]', ''))) AS ?step2509) .
BIND(((?step2509 + ?targetMotifMatchRegionMatchBeginPositionMF_04084499) - 1) AS ?thisPositionOn121) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084496, 1, (STRLEN(?templateMotifCigarP08669MF_04084496) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084496, CONCAT('^(?:-*[^-]){', STR(((259 - ?templateMotifSequenceMatchBeginPositionP08669497) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1510) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084498, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084498) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084498, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1510), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084498, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084498) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084498, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1510), '}'), '')))), '[^-]', ''))) AS ?step2511) .
BIND(((?step2511 + ?targetMotifMatchRegionMatchBeginPositionMF_04084499) - 1) AS ?thisPositionOn122) .
BIND(?this AS ?pfs3t512) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfsb119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn122))) AS ?pfse120) .
FILTER ((BOUND(?thisPositionOn121) && BOUND(?thisPositionOn122))) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a118')) AS ?annotation118) .
BIND(?this AS ?pfs117) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch517 faldo:location ?templateMotifSequenceMatchRegionP08669518 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669520 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084513 .
?templateMotifSequenceMatchRegionP08669518 faldo:begin ?templateMotifSequenceMatchBeginP08669519 .
?templateMotifSequenceMatchBeginP08669519 faldo:position ?templateMotifSequenceMatchBeginPositionP08669514 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669520 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch521 faldo:location ?targetMotifMatchRegionMatch522 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084524 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084515 .
?targetMotifMatchRegionMatch522 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084523 .
?targetMotifMatchRegionMatchBeginMF_04084523 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084516 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084524 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084513, 1, (STRLEN(?templateMotifCigarP08669MF_04084513) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084513, CONCAT('^(?:-*[^-]){', STR(((260 - ?templateMotifSequenceMatchBeginPositionP08669514) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1525) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084515, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084515) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084515, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1525), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084515, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084515) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084515, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1525), '}'), '')))), '[^-]', ''))) AS ?step2526) .
BIND(((?step2526 + ?targetMotifMatchRegionMatchBeginPositionMF_04084516) - 1) AS ?thisPositionOn127) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn128) .
BIND(?this AS ?pfs3t527) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfsb125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfse126) .
FILTER ((BOUND(?thisPositionOn127) && BOUND(?thisPositionOn128))) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a124')) AS ?annotation124) .
BIND(?this AS ?pfs123) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch532 faldo:location ?templateMotifSequenceMatchRegionP08669533 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669535 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084528 .
?templateMotifSequenceMatchRegionP08669533 faldo:begin ?templateMotifSequenceMatchBeginP08669534 .
?templateMotifSequenceMatchBeginP08669534 faldo:position ?templateMotifSequenceMatchBeginPositionP08669529 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669535 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch536 faldo:location ?targetMotifMatchRegionMatch537 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084539 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084530 .
?targetMotifMatchRegionMatch537 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084538 .
?targetMotifMatchRegionMatchBeginMF_04084538 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084531 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084539 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084528, 1, (STRLEN(?templateMotifCigarP08669MF_04084528) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084528, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP08669529) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1540) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084530, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084530) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084530, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1540), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084530, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084530) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084530, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1540), '}'), '')))), '[^-]', ''))) AS ?step2541) .
BIND(((?step2541 + ?targetMotifMatchRegionMatchBeginPositionMF_04084531) - 1) AS ?thisPositionOn133) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084528, 1, (STRLEN(?templateMotifCigarP08669MF_04084528) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084528, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP08669529) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1542) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084530, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084530) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084530, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1542), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084530, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084530) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084530, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1542), '}'), '')))), '[^-]', ''))) AS ?step2543) .
BIND(((?step2543 + ?targetMotifMatchRegionMatchBeginPositionMF_04084531) - 1) AS ?thisPositionOn134) .
BIND(?this AS ?pfs3t544) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn133))) AS ?pfsb131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfse132) .
FILTER ((BOUND(?thisPositionOn133) && BOUND(?thisPositionOn134))) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a130')) AS ?annotation130) .
BIND(?this AS ?pfs129) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch549 faldo:location ?templateMotifSequenceMatchRegionP08669550 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669552 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084545 .
?templateMotifSequenceMatchRegionP08669550 faldo:begin ?templateMotifSequenceMatchBeginP08669551 .
?templateMotifSequenceMatchBeginP08669551 faldo:position ?templateMotifSequenceMatchBeginPositionP08669546 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669552 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch553 faldo:location ?targetMotifMatchRegionMatch554 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084556 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084547 .
?targetMotifMatchRegionMatch554 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084555 .
?targetMotifMatchRegionMatchBeginMF_04084555 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084548 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084556 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084545, 1, (STRLEN(?templateMotifCigarP08669MF_04084545) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084545, CONCAT('^(?:-*[^-]){', STR(((18 - ?templateMotifSequenceMatchBeginPositionP08669546) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1557) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084547, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084547) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084547, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1557), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084547, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084547) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084547, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1557), '}'), '')))), '[^-]', ''))) AS ?step2558) .
BIND(((?step2558 + ?targetMotifMatchRegionMatchBeginPositionMF_04084548) - 1) AS ?thisPositionOn139) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084545, 1, (STRLEN(?templateMotifCigarP08669MF_04084545) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084545, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionP08669546) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1559) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084547, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084547) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084547, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1559), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084547, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084547) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084547, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1559), '}'), '')))), '[^-]', ''))) AS ?step2560) .
BIND(((?step2560 + ?targetMotifMatchRegionMatchBeginPositionMF_04084548) - 1) AS ?thisPositionOn140) .
BIND(?this AS ?pfs3t561) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn139))) AS ?pfsb137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn140))) AS ?pfse138) .
FILTER ((BOUND(?thisPositionOn139) && BOUND(?thisPositionOn140))) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a136')) AS ?annotation136) .
BIND(?this AS ?pfs135) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch566 faldo:location ?templateMotifSequenceMatchRegionP08669567 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669569 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084562 .
?templateMotifSequenceMatchRegionP08669567 faldo:begin ?templateMotifSequenceMatchBeginP08669568 .
?templateMotifSequenceMatchBeginP08669568 faldo:position ?templateMotifSequenceMatchBeginPositionP08669563 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669569 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch570 faldo:location ?targetMotifMatchRegionMatch571 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084573 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084564 .
?targetMotifMatchRegionMatch571 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084572 .
?targetMotifMatchRegionMatchBeginMF_04084572 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084565 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084573 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084562, 1, (STRLEN(?templateMotifCigarP08669MF_04084562) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084562, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionP08669563) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1574) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084564, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084564) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084564, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1574), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084564, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084564) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084564, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1574), '}'), '')))), '[^-]', ''))) AS ?step2575) .
BIND(((?step2575 + ?targetMotifMatchRegionMatchBeginPositionMF_04084565) - 1) AS ?thisPositionOn145) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084562, 1, (STRLEN(?templateMotifCigarP08669MF_04084562) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084562, CONCAT('^(?:-*[^-]){', STR(((58 - ?templateMotifSequenceMatchBeginPositionP08669563) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1576) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084564, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084564) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084564, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1576), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084564, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084564) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084564, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1576), '}'), '')))), '[^-]', ''))) AS ?step2577) .
BIND(((?step2577 + ?targetMotifMatchRegionMatchBeginPositionMF_04084565) - 1) AS ?thisPositionOn146) .
BIND(?this AS ?pfs3t578) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn145))) AS ?pfsb143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn146))) AS ?pfse144) .
FILTER ((BOUND(?thisPositionOn145) && BOUND(?thisPositionOn146))) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a142')) AS ?annotation142) .
BIND(?this AS ?pfs141) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch583 faldo:location ?templateMotifSequenceMatchRegionP08669584 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669586 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084579 .
?templateMotifSequenceMatchRegionP08669584 faldo:begin ?templateMotifSequenceMatchBeginP08669585 .
?templateMotifSequenceMatchBeginP08669585 faldo:position ?templateMotifSequenceMatchBeginPositionP08669580 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669586 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch587 faldo:location ?targetMotifMatchRegionMatch588 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084590 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084581 .
?targetMotifMatchRegionMatch588 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084589 .
?targetMotifMatchRegionMatchBeginMF_04084589 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084582 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084590 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084579, 1, (STRLEN(?templateMotifCigarP08669MF_04084579) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084579, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionP08669580) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1591) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084581, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084581) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084581, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1591), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084581, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084581) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084581, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1591), '}'), '')))), '[^-]', ''))) AS ?step2592) .
BIND(((?step2592 + ?targetMotifMatchRegionMatchBeginPositionMF_04084582) - 1) AS ?thisPositionOn151) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084579, 1, (STRLEN(?templateMotifCigarP08669MF_04084579) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084579, CONCAT('^(?:-*[^-]){', STR(((432 - ?templateMotifSequenceMatchBeginPositionP08669580) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1593) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084581, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084581) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084581, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1593), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084581, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084581) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084581, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1593), '}'), '')))), '[^-]', ''))) AS ?step2594) .
BIND(((?step2594 + ?targetMotifMatchRegionMatchBeginPositionMF_04084582) - 1) AS ?thisPositionOn152) .
BIND(?this AS ?pfs3t595) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn151))) AS ?pfsb149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn152))) AS ?pfse150) .
FILTER ((BOUND(?thisPositionOn151) && BOUND(?thisPositionOn152))) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a148')) AS ?annotation148) .
BIND(?this AS ?pfs147) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch600 faldo:location ?templateMotifSequenceMatchRegionP08669601 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669603 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084596 .
?templateMotifSequenceMatchRegionP08669601 faldo:begin ?templateMotifSequenceMatchBeginP08669602 .
?templateMotifSequenceMatchBeginP08669602 faldo:position ?templateMotifSequenceMatchBeginPositionP08669597 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669603 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch604 faldo:location ?targetMotifMatchRegionMatch605 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084607 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084598 .
?targetMotifMatchRegionMatch605 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084606 .
?targetMotifMatchRegionMatchBeginMF_04084606 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084599 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084607 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084596, 1, (STRLEN(?templateMotifCigarP08669MF_04084596) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084596, CONCAT('^(?:-*[^-]){', STR(((433 - ?templateMotifSequenceMatchBeginPositionP08669597) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1608) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084598, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084598) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084598, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1608), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084598, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084598) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084598, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1608), '}'), '')))), '[^-]', ''))) AS ?step2609) .
BIND(((?step2609 + ?targetMotifMatchRegionMatchBeginPositionMF_04084599) - 1) AS ?thisPositionOn157) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084596, 1, (STRLEN(?templateMotifCigarP08669MF_04084596) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084596, CONCAT('^(?:-*[^-]){', STR(((453 - ?templateMotifSequenceMatchBeginPositionP08669597) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1610) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084598, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084598) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084598, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1610), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084598, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084598) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084598, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1610), '}'), '')))), '[^-]', ''))) AS ?step2611) .
BIND(((?step2611 + ?targetMotifMatchRegionMatchBeginPositionMF_04084599) - 1) AS ?thisPositionOn158) .
BIND(?this AS ?pfs3t612) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn157))) AS ?pfsb155) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn158))) AS ?pfse156) .
FILTER ((BOUND(?thisPositionOn157) && BOUND(?thisPositionOn158))) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a154')) AS ?annotation154) .
BIND(?this AS ?pfs153) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch617 faldo:location ?templateMotifSequenceMatchRegionP08669618 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669620 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084613 .
?templateMotifSequenceMatchRegionP08669618 faldo:begin ?templateMotifSequenceMatchBeginP08669619 .
?templateMotifSequenceMatchBeginP08669619 faldo:position ?templateMotifSequenceMatchBeginPositionP08669614 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669620 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch621 faldo:location ?targetMotifMatchRegionMatch622 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084624 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084615 .
?targetMotifMatchRegionMatch622 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084623 .
?targetMotifMatchRegionMatchBeginMF_04084623 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084616 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084624 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084613, 1, (STRLEN(?templateMotifCigarP08669MF_04084613) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084613, CONCAT('^(?:-*[^-]){', STR(((454 - ?templateMotifSequenceMatchBeginPositionP08669614) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1625) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084615, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084615) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084615, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1625), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084615, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084615) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084615, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1625), '}'), '')))), '[^-]', ''))) AS ?step2626) .
BIND(((?step2626 + ?targetMotifMatchRegionMatchBeginPositionMF_04084616) - 1) AS ?thisPositionOn163) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn164) .
BIND(?this AS ?pfs3t627) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn163))) AS ?pfsb161) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn164))) AS ?pfse162) .
FILTER ((BOUND(?thisPositionOn163) && BOUND(?thisPositionOn164))) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a160')) AS ?annotation160) .
BIND(?this AS ?pfs159) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch632 faldo:location ?templateMotifSequenceMatchRegionP08669633 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669635 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084628 .
?templateMotifSequenceMatchRegionP08669633 faldo:begin ?templateMotifSequenceMatchBeginP08669634 .
?templateMotifSequenceMatchBeginP08669634 faldo:position ?templateMotifSequenceMatchBeginPositionP08669629 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669635 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch636 faldo:location ?targetMotifMatchRegionMatch637 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084639 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084630 .
?targetMotifMatchRegionMatch637 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084638 .
?targetMotifMatchRegionMatchBeginMF_04084638 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084631 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084639 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084628, 1, (STRLEN(?templateMotifCigarP08669MF_04084628) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084628, CONCAT('^(?:-*[^-]){', STR(((58 - ?templateMotifSequenceMatchBeginPositionP08669629) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1640) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084630, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084630) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084630, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1640), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084630, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084630) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084630, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1640), '}'), '')))), '[^-]', ''))) AS ?step2641) .
BIND(((?step2641 + ?targetMotifMatchRegionMatchBeginPositionMF_04084631) - 1) AS ?thisPositionOn169) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084628, 1, (STRLEN(?templateMotifCigarP08669MF_04084628) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084628, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionP08669629) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1642) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084630, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084630) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084630, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1642), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084630, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084630) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084630, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1642), '}'), '')))), '[^-]', ''))) AS ?step2643) .
BIND(((?step2643 + ?targetMotifMatchRegionMatchBeginPositionMF_04084631) - 1) AS ?thisPositionOn170) .
BIND(?this AS ?pfs3t644) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn169))) AS ?pfsb167) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn170))) AS ?pfse168) .
FILTER ((BOUND(?thisPositionOn169) && BOUND(?thisPositionOn170))) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a166')) AS ?annotation166) .
BIND(?this AS ?pfs165) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch649 faldo:location ?templateMotifSequenceMatchRegionP08669650 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669652 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084645 .
?templateMotifSequenceMatchRegionP08669650 faldo:begin ?templateMotifSequenceMatchBeginP08669651 .
?templateMotifSequenceMatchBeginP08669651 faldo:position ?templateMotifSequenceMatchBeginPositionP08669646 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669652 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch653 faldo:location ?targetMotifMatchRegionMatch654 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084656 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084647 .
?targetMotifMatchRegionMatch654 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084655 .
?targetMotifMatchRegionMatchBeginMF_04084655 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084648 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084656 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084645, 1, (STRLEN(?templateMotifCigarP08669MF_04084645) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084645, CONCAT('^(?:-*[^-]){', STR(((259 - ?templateMotifSequenceMatchBeginPositionP08669646) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1657) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084647, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084647) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084647, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1657), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084647, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084647) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084647, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1657), '}'), '')))), '[^-]', ''))) AS ?step2658) .
BIND(((?step2658 + ?targetMotifMatchRegionMatchBeginPositionMF_04084648) - 1) AS ?thisPositionOn175) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084645, 1, (STRLEN(?templateMotifCigarP08669MF_04084645) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084645, CONCAT('^(?:-*[^-]){', STR(((260 - ?templateMotifSequenceMatchBeginPositionP08669646) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1659) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084647, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084647) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084647, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1659), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084647, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084647) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084647, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1659), '}'), '')))), '[^-]', ''))) AS ?step2660) .
BIND(((?step2660 + ?targetMotifMatchRegionMatchBeginPositionMF_04084648) - 1) AS ?thisPositionOn176) .
BIND(?this AS ?pfs3t661) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn175))) AS ?pfsb173) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn176))) AS ?pfse174) .
FILTER ((BOUND(?thisPositionOn175) && BOUND(?thisPositionOn176))) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a172')) AS ?annotation172) .
BIND(?this AS ?pfs171) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch666 faldo:location ?templateMotifSequenceMatchRegionP08669667 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669669 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084662 .
?templateMotifSequenceMatchRegionP08669667 faldo:begin ?templateMotifSequenceMatchBeginP08669668 .
?templateMotifSequenceMatchBeginP08669668 faldo:position ?templateMotifSequenceMatchBeginPositionP08669663 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669669 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch670 faldo:location ?targetMotifMatchRegionMatch671 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084673 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084664 .
?targetMotifMatchRegionMatch671 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084672 .
?targetMotifMatchRegionMatchBeginMF_04084672 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084665 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084673 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084662, 1, (STRLEN(?templateMotifCigarP08669MF_04084662) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084662, CONCAT('^(?:-*[^-]){', STR(((258 - ?templateMotifSequenceMatchBeginPositionP08669663) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1674) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084664, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084664) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084664, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1674), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084664, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084664) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084664, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1674), '}'), '')))), '[^-]', ''))) AS ?step2675) .
BIND(((?step2675 + ?targetMotifMatchRegionMatchBeginPositionMF_04084665) - 1) AS ?thisPositionOn181) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084662, 1, (STRLEN(?templateMotifCigarP08669MF_04084662) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084662, CONCAT('^(?:-*[^-]){', STR(((294 - ?templateMotifSequenceMatchBeginPositionP08669663) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1676) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084664, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084664) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084664, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1676), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084664, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084664) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084664, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1676), '}'), '')))), '[^-]', ''))) AS ?step2677) .
BIND(((?step2677 + ?targetMotifMatchRegionMatchBeginPositionMF_04084665) - 1) AS ?thisPositionOn182) .
BIND(?this AS ?pfs3t678) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn181))) AS ?pfsb179) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn182))) AS ?pfse180) .
FILTER ((BOUND(?thisPositionOn181) && BOUND(?thisPositionOn182))) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a178')) AS ?annotation178) .
BIND(?this AS ?pfs177) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch683 faldo:location ?templateMotifSequenceMatchRegionP08669684 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669686 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084679 .
?templateMotifSequenceMatchRegionP08669684 faldo:begin ?templateMotifSequenceMatchBeginP08669685 .
?templateMotifSequenceMatchBeginP08669685 faldo:position ?templateMotifSequenceMatchBeginPositionP08669680 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669686 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch687 faldo:location ?targetMotifMatchRegionMatch688 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084690 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084681 .
?targetMotifMatchRegionMatch688 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084689 .
?targetMotifMatchRegionMatchBeginMF_04084689 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084682 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084690 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084679, 1, (STRLEN(?templateMotifCigarP08669MF_04084679) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084679, CONCAT('^(?:-*[^-]){', STR(((295 - ?templateMotifSequenceMatchBeginPositionP08669680) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1691) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084681, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084681) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084681, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1691), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084681, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084681) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084681, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1691), '}'), '')))), '[^-]', ''))) AS ?step2692) .
BIND(((?step2692 + ?targetMotifMatchRegionMatchBeginPositionMF_04084682) - 1) AS ?thisPositionOn187) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084679, 1, (STRLEN(?templateMotifCigarP08669MF_04084679) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084679, CONCAT('^(?:-*[^-]){', STR(((363 - ?templateMotifSequenceMatchBeginPositionP08669680) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1693) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084681, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084681) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084681, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1693), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084681, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084681) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084681, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1693), '}'), '')))), '[^-]', ''))) AS ?step2694) .
BIND(((?step2694 + ?targetMotifMatchRegionMatchBeginPositionMF_04084682) - 1) AS ?thisPositionOn188) .
BIND(?this AS ?pfs3t695) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn187))) AS ?pfsb185) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn188))) AS ?pfse186) .
FILTER ((BOUND(?thisPositionOn187) && BOUND(?thisPositionOn188))) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a184')) AS ?annotation184) .
BIND(?this AS ?pfs183) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch700 faldo:location ?templateMotifSequenceMatchRegionP08669701 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669703 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084696 .
?templateMotifSequenceMatchRegionP08669701 faldo:begin ?templateMotifSequenceMatchBeginP08669702 .
?templateMotifSequenceMatchBeginP08669702 faldo:position ?templateMotifSequenceMatchBeginPositionP08669697 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669703 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch704 faldo:location ?targetMotifMatchRegionMatch705 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084707 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084698 .
?targetMotifMatchRegionMatch705 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084706 .
?targetMotifMatchRegionMatchBeginMF_04084706 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084699 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084707 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084696, 1, (STRLEN(?templateMotifCigarP08669MF_04084696) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084696, CONCAT('^(?:-*[^-]){', STR(((368 - ?templateMotifSequenceMatchBeginPositionP08669697) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1708) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084698, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084698) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084698, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1708), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084698, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084698) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084698, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1708), '}'), '')))), '[^-]', ''))) AS ?step2709) .
BIND(((?step2709 + ?targetMotifMatchRegionMatchBeginPositionMF_04084699) - 1) AS ?thisPositionOn193) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084696, 1, (STRLEN(?templateMotifCigarP08669MF_04084696) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084696, CONCAT('^(?:-*[^-]){', STR(((431 - ?templateMotifSequenceMatchBeginPositionP08669697) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1710) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084698, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084698) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084698, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1710), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084698, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084698) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084698, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1710), '}'), '')))), '[^-]', ''))) AS ?step2711) .
BIND(((?step2711 + ?targetMotifMatchRegionMatchBeginPositionMF_04084699) - 1) AS ?thisPositionOn194) .
BIND(?this AS ?pfs3t712) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn193))) AS ?pfsb191) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn194))) AS ?pfse192) .
FILTER ((BOUND(?thisPositionOn193) && BOUND(?thisPositionOn194))) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a190')) AS ?annotation190) .
BIND(?this AS ?pfs189) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch717 faldo:location ?templateMotifSequenceMatchRegionP08669718 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669720 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084713 .
?templateMotifSequenceMatchRegionP08669718 faldo:begin ?templateMotifSequenceMatchBeginP08669719 .
?templateMotifSequenceMatchBeginP08669719 faldo:position ?templateMotifSequenceMatchBeginPositionP08669714 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669720 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch721 faldo:location ?targetMotifMatchRegionMatch722 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084724 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084715 .
?targetMotifMatchRegionMatch722 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084723 .
?targetMotifMatchRegionMatchBeginMF_04084723 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084716 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084724 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084713, 1, (STRLEN(?templateMotifCigarP08669MF_04084713) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084713, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP08669714) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1725) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084715, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084715) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084715, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1725), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084715, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084715) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084715, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1725), '}'), '')))), '[^-]', ''))) AS ?step2726) .
BIND(((?step2726 + ?targetMotifMatchRegionMatchBeginPositionMF_04084716) - 1) AS ?thisPositionOn199) .
BIND(?thisPositionOn199 AS ?thisPositionOn200) .
BIND(?this AS ?pfs3t727) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn199))) AS ?pfsb197) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn200))) AS ?pfse198) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn199, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a196')) AS ?annotation196) .
BIND(?this AS ?pfs195) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch732 faldo:location ?templateMotifSequenceMatchRegionP08669733 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669735 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084728 .
?templateMotifSequenceMatchRegionP08669733 faldo:begin ?templateMotifSequenceMatchBeginP08669734 .
?templateMotifSequenceMatchBeginP08669734 faldo:position ?templateMotifSequenceMatchBeginPositionP08669729 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669735 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch736 faldo:location ?targetMotifMatchRegionMatch737 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084739 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084730 .
?targetMotifMatchRegionMatch737 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084738 .
?targetMotifMatchRegionMatchBeginMF_04084738 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084731 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084739 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084728, 1, (STRLEN(?templateMotifCigarP08669MF_04084728) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084728, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP08669729) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1740) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084730, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084730) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084730, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1740), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084730, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084730) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084730, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1740), '}'), '')))), '[^-]', ''))) AS ?step2741) .
BIND(((?step2741 + ?targetMotifMatchRegionMatchBeginPositionMF_04084731) - 1) AS ?thisPositionOn205) .
BIND(?thisPositionOn205 AS ?thisPositionOn206) .
BIND(?this AS ?pfs3t742) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn205))) AS ?pfsb203) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn206))) AS ?pfse204) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn205, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a202')) AS ?annotation202) .
BIND(?this AS ?pfs201) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch747 faldo:location ?templateMotifSequenceMatchRegionP08669748 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669750 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084743 .
?templateMotifSequenceMatchRegionP08669748 faldo:begin ?templateMotifSequenceMatchBeginP08669749 .
?templateMotifSequenceMatchBeginP08669749 faldo:position ?templateMotifSequenceMatchBeginPositionP08669744 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669750 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch751 faldo:location ?targetMotifMatchRegionMatch752 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084754 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084745 .
?targetMotifMatchRegionMatch752 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084753 .
?targetMotifMatchRegionMatchBeginMF_04084753 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084746 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084754 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084743, 1, (STRLEN(?templateMotifCigarP08669MF_04084743) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084743, CONCAT('^(?:-*[^-]){', STR(((79 - ?templateMotifSequenceMatchBeginPositionP08669744) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1755) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084745, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084745) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084745, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1755), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084745, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084745) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084745, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1755), '}'), '')))), '[^-]', ''))) AS ?step2756) .
BIND(((?step2756 + ?targetMotifMatchRegionMatchBeginPositionMF_04084746) - 1) AS ?thisPositionOn211) .
BIND(?thisPositionOn211 AS ?thisPositionOn212) .
BIND(?this AS ?pfs3t757) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn211))) AS ?pfsb209) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn212))) AS ?pfse210) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn211, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a208')) AS ?annotation208) .
BIND(?this AS ?pfs207) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch762 faldo:location ?templateMotifSequenceMatchRegionP08669763 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669765 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084758 .
?templateMotifSequenceMatchRegionP08669763 faldo:begin ?templateMotifSequenceMatchBeginP08669764 .
?templateMotifSequenceMatchBeginP08669764 faldo:position ?templateMotifSequenceMatchBeginPositionP08669759 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669765 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch766 faldo:location ?targetMotifMatchRegionMatch767 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084769 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084760 .
?targetMotifMatchRegionMatch767 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084768 .
?targetMotifMatchRegionMatchBeginMF_04084768 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084761 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084769 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084758, 1, (STRLEN(?templateMotifCigarP08669MF_04084758) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084758, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP08669759) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1770) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084760, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084760) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084760, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1770), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084760, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084760) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084760, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1770), '}'), '')))), '[^-]', ''))) AS ?step2771) .
BIND(((?step2771 + ?targetMotifMatchRegionMatchBeginPositionMF_04084761) - 1) AS ?thisPositionOn217) .
BIND(?thisPositionOn217 AS ?thisPositionOn218) .
BIND(?this AS ?pfs3t772) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn217))) AS ?pfsb215) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn218))) AS ?pfse216) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn217, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a214')) AS ?annotation214) .
BIND(?this AS ?pfs213) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch777 faldo:location ?templateMotifSequenceMatchRegionP08669778 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669780 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084773 .
?templateMotifSequenceMatchRegionP08669778 faldo:begin ?templateMotifSequenceMatchBeginP08669779 .
?templateMotifSequenceMatchBeginP08669779 faldo:position ?templateMotifSequenceMatchBeginPositionP08669774 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669780 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch781 faldo:location ?targetMotifMatchRegionMatch782 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084784 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084775 .
?targetMotifMatchRegionMatch782 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084783 .
?targetMotifMatchRegionMatchBeginMF_04084783 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084776 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084784 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084773, 1, (STRLEN(?templateMotifCigarP08669MF_04084773) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084773, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionP08669774) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1785) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084775, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084775) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084775, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1785), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084775, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084775) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084775, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1785), '}'), '')))), '[^-]', ''))) AS ?step2786) .
BIND(((?step2786 + ?targetMotifMatchRegionMatchBeginPositionMF_04084776) - 1) AS ?thisPositionOn223) .
BIND(?thisPositionOn223 AS ?thisPositionOn224) .
BIND(?this AS ?pfs3t787) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn223))) AS ?pfsb221) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn224))) AS ?pfse222) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn223, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a220')) AS ?annotation220) .
BIND(?this AS ?pfs219) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch792 faldo:location ?templateMotifSequenceMatchRegionP08669793 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669795 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084788 .
?templateMotifSequenceMatchRegionP08669793 faldo:begin ?templateMotifSequenceMatchBeginP08669794 .
?templateMotifSequenceMatchBeginP08669794 faldo:position ?templateMotifSequenceMatchBeginPositionP08669789 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669795 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch796 faldo:location ?targetMotifMatchRegionMatch797 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084799 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084790 .
?targetMotifMatchRegionMatch797 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084798 .
?targetMotifMatchRegionMatchBeginMF_04084798 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084791 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084799 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084788, 1, (STRLEN(?templateMotifCigarP08669MF_04084788) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084788, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionP08669789) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1800) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084790, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084790) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084790, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1800), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084790, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084790) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084790, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1800), '}'), '')))), '[^-]', ''))) AS ?step2801) .
BIND(((?step2801 + ?targetMotifMatchRegionMatchBeginPositionMF_04084791) - 1) AS ?thisPositionOn229) .
BIND(?thisPositionOn229 AS ?thisPositionOn230) .
BIND(?this AS ?pfs3t802) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn229))) AS ?pfsb227) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn230))) AS ?pfse228) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn229, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a226')) AS ?annotation226) .
BIND(?this AS ?pfs225) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch807 faldo:location ?templateMotifSequenceMatchRegionP08669808 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669810 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084803 .
?templateMotifSequenceMatchRegionP08669808 faldo:begin ?templateMotifSequenceMatchBeginP08669809 .
?templateMotifSequenceMatchBeginP08669809 faldo:position ?templateMotifSequenceMatchBeginPositionP08669804 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669810 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch811 faldo:location ?targetMotifMatchRegionMatch812 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084814 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084805 .
?targetMotifMatchRegionMatch812 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084813 .
?targetMotifMatchRegionMatchBeginMF_04084813 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084806 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084814 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084803, 1, (STRLEN(?templateMotifCigarP08669MF_04084803) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084803, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionP08669804) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1815) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084805, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084805) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084805, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1815), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084805, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084805) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084805, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1815), '}'), '')))), '[^-]', ''))) AS ?step2816) .
BIND(((?step2816 + ?targetMotifMatchRegionMatchBeginPositionMF_04084806) - 1) AS ?thisPositionOn235) .
BIND(?thisPositionOn235 AS ?thisPositionOn236) .
BIND(?this AS ?pfs3t817) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn235))) AS ?pfsb233) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn236))) AS ?pfse234) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn235, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a232')) AS ?annotation232) .
BIND(?this AS ?pfs231) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch822 faldo:location ?templateMotifSequenceMatchRegionP08669823 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669825 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084818 .
?templateMotifSequenceMatchRegionP08669823 faldo:begin ?templateMotifSequenceMatchBeginP08669824 .
?templateMotifSequenceMatchBeginP08669824 faldo:position ?templateMotifSequenceMatchBeginPositionP08669819 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669825 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch826 faldo:location ?targetMotifMatchRegionMatch827 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084829 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084820 .
?targetMotifMatchRegionMatch827 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084828 .
?targetMotifMatchRegionMatchBeginMF_04084828 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084821 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084829 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084818, 1, (STRLEN(?templateMotifCigarP08669MF_04084818) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084818, CONCAT('^(?:-*[^-]){', STR(((167 - ?templateMotifSequenceMatchBeginPositionP08669819) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1830) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084820, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084820) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084820, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1830), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084820, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084820) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084820, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1830), '}'), '')))), '[^-]', ''))) AS ?step2831) .
BIND(((?step2831 + ?targetMotifMatchRegionMatchBeginPositionMF_04084821) - 1) AS ?thisPositionOn241) .
BIND(?thisPositionOn241 AS ?thisPositionOn242) .
BIND(?this AS ?pfs3t832) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn241))) AS ?pfsb239) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn242))) AS ?pfse240) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn241, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a238')) AS ?annotation238) .
BIND(?this AS ?pfs237) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch837 faldo:location ?templateMotifSequenceMatchRegionP08669838 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669840 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084833 .
?templateMotifSequenceMatchRegionP08669838 faldo:begin ?templateMotifSequenceMatchBeginP08669839 .
?templateMotifSequenceMatchBeginP08669839 faldo:position ?templateMotifSequenceMatchBeginPositionP08669834 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669840 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch841 faldo:location ?targetMotifMatchRegionMatch842 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084844 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084835 .
?targetMotifMatchRegionMatch842 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084843 .
?targetMotifMatchRegionMatchBeginMF_04084843 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084836 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084844 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084833, 1, (STRLEN(?templateMotifCigarP08669MF_04084833) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084833, CONCAT('^(?:-*[^-]){', STR(((224 - ?templateMotifSequenceMatchBeginPositionP08669834) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1845) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084835, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084835) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084835, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1845), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084835, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084835) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084835, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1845), '}'), '')))), '[^-]', ''))) AS ?step2846) .
BIND(((?step2846 + ?targetMotifMatchRegionMatchBeginPositionMF_04084836) - 1) AS ?thisPositionOn247) .
BIND(?thisPositionOn247 AS ?thisPositionOn248) .
BIND(?this AS ?pfs3t847) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn247))) AS ?pfsb245) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn248))) AS ?pfse246) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn247, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a244')) AS ?annotation244) .
BIND(?this AS ?pfs243) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch852 faldo:location ?templateMotifSequenceMatchRegionP08669853 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669855 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084848 .
?templateMotifSequenceMatchRegionP08669853 faldo:begin ?templateMotifSequenceMatchBeginP08669854 .
?templateMotifSequenceMatchBeginP08669854 faldo:position ?templateMotifSequenceMatchBeginPositionP08669849 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669855 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch856 faldo:location ?targetMotifMatchRegionMatch857 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084859 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084850 .
?targetMotifMatchRegionMatch857 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084858 .
?targetMotifMatchRegionMatchBeginMF_04084858 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084851 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084859 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084848, 1, (STRLEN(?templateMotifCigarP08669MF_04084848) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084848, CONCAT('^(?:-*[^-]){', STR(((365 - ?templateMotifSequenceMatchBeginPositionP08669849) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1860) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084850, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084850) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084850, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1860), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084850, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084850) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084850, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1860), '}'), '')))), '[^-]', ''))) AS ?step2861) .
BIND(((?step2861 + ?targetMotifMatchRegionMatchBeginPositionMF_04084851) - 1) AS ?thisPositionOn253) .
BIND(?thisPositionOn253 AS ?thisPositionOn254) .
BIND(?this AS ?pfs3t862) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn253))) AS ?pfsb251) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn254))) AS ?pfse252) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn253, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a250')) AS ?annotation250) .
BIND(?this AS ?pfs249) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch867 faldo:location ?templateMotifSequenceMatchRegionP08669868 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669870 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084863 .
?templateMotifSequenceMatchRegionP08669868 faldo:begin ?templateMotifSequenceMatchBeginP08669869 .
?templateMotifSequenceMatchBeginP08669869 faldo:position ?templateMotifSequenceMatchBeginPositionP08669864 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669870 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch871 faldo:location ?targetMotifMatchRegionMatch872 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084874 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084865 .
?targetMotifMatchRegionMatch872 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084873 .
?targetMotifMatchRegionMatchBeginMF_04084873 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084866 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084874 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084863, 1, (STRLEN(?templateMotifCigarP08669MF_04084863) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084863, CONCAT('^(?:-*[^-]){', STR(((373 - ?templateMotifSequenceMatchBeginPositionP08669864) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1875) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084865, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084865) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084865, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1875), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084865, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084865) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084865, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1875), '}'), '')))), '[^-]', ''))) AS ?step2876) .
BIND(((?step2876 + ?targetMotifMatchRegionMatchBeginPositionMF_04084866) - 1) AS ?thisPositionOn259) .
BIND(?thisPositionOn259 AS ?thisPositionOn260) .
BIND(?this AS ?pfs3t877) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn259))) AS ?pfsb257) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn260))) AS ?pfse258) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn259, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a256')) AS ?annotation256) .
BIND(?this AS ?pfs255) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch882 faldo:location ?templateMotifSequenceMatchRegionP08669883 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669885 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084878 .
?templateMotifSequenceMatchRegionP08669883 faldo:begin ?templateMotifSequenceMatchBeginP08669884 .
?templateMotifSequenceMatchBeginP08669884 faldo:position ?templateMotifSequenceMatchBeginPositionP08669879 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669885 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch886 faldo:location ?targetMotifMatchRegionMatch887 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084889 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084880 .
?targetMotifMatchRegionMatch887 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084888 .
?targetMotifMatchRegionMatchBeginMF_04084888 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084881 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084889 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084878, 1, (STRLEN(?templateMotifCigarP08669MF_04084878) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084878, CONCAT('^(?:-*[^-]){', STR(((390 - ?templateMotifSequenceMatchBeginPositionP08669879) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1890) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084880, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084880) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084880, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1890), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084880, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084880) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084880, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1890), '}'), '')))), '[^-]', ''))) AS ?step2891) .
BIND(((?step2891 + ?targetMotifMatchRegionMatchBeginPositionMF_04084881) - 1) AS ?thisPositionOn265) .
BIND(?thisPositionOn265 AS ?thisPositionOn266) .
BIND(?this AS ?pfs3t892) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn265))) AS ?pfsb263) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn266))) AS ?pfse264) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn265, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a262')) AS ?annotation262) .
BIND(?this AS ?pfs261) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch897 faldo:location ?templateMotifSequenceMatchRegionP08669898 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669900 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084893 .
?templateMotifSequenceMatchRegionP08669898 faldo:begin ?templateMotifSequenceMatchBeginP08669899 .
?templateMotifSequenceMatchBeginP08669899 faldo:position ?templateMotifSequenceMatchBeginPositionP08669894 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669900 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch901 faldo:location ?targetMotifMatchRegionMatch902 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084904 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084895 .
?targetMotifMatchRegionMatch902 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084903 .
?targetMotifMatchRegionMatchBeginMF_04084903 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084896 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084904 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084893, 1, (STRLEN(?templateMotifCigarP08669MF_04084893) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084893, CONCAT('^(?:-*[^-]){', STR(((395 - ?templateMotifSequenceMatchBeginPositionP08669894) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1905) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084895, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084895) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084895, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1905), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084895, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084895) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084895, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1905), '}'), '')))), '[^-]', ''))) AS ?step2906) .
BIND(((?step2906 + ?targetMotifMatchRegionMatchBeginPositionMF_04084896) - 1) AS ?thisPositionOn271) .
BIND(?thisPositionOn271 AS ?thisPositionOn272) .
BIND(?this AS ?pfs3t907) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn271))) AS ?pfsb269) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn272))) AS ?pfse270) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn271, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a268')) AS ?annotation268) .
BIND(?this AS ?pfs267) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch912 faldo:location ?templateMotifSequenceMatchRegionP08669913 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669915 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084908 .
?templateMotifSequenceMatchRegionP08669913 faldo:begin ?templateMotifSequenceMatchBeginP08669914 .
?templateMotifSequenceMatchBeginP08669914 faldo:position ?templateMotifSequenceMatchBeginPositionP08669909 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669915 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch916 faldo:location ?targetMotifMatchRegionMatch917 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084919 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084910 .
?targetMotifMatchRegionMatch917 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084918 .
?targetMotifMatchRegionMatchBeginMF_04084918 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084911 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084919 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084908, 1, (STRLEN(?templateMotifCigarP08669MF_04084908) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084908, CONCAT('^(?:-*[^-]){', STR(((86 - ?templateMotifSequenceMatchBeginPositionP08669909) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1920) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084910, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084910) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084910, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1920), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084910, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084910) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084910, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1920), '}'), '')))), '[^-]', ''))) AS ?step2921) .
BIND(((?step2921 + ?targetMotifMatchRegionMatchBeginPositionMF_04084911) - 1) AS ?thisPositionOn277) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084908, 1, (STRLEN(?templateMotifCigarP08669MF_04084908) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084908, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionP08669909) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1922) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084910, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084910) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084910, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1922), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084910, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084910) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084910, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1922), '}'), '')))), '[^-]', ''))) AS ?step2923) .
BIND(((?step2923 + ?targetMotifMatchRegionMatchBeginPositionMF_04084911) - 1) AS ?thisPositionOn278) .
BIND(?this AS ?pfs3t924) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn277))) AS ?pfsb275) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn278))) AS ?pfse276) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn277, (?thisPositionOn278 - ?thisPositionOn277)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a274')) AS ?annotation274) .
BIND(?this AS ?pfs273) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch929 faldo:location ?templateMotifSequenceMatchRegionP08669930 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669932 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084925 .
?templateMotifSequenceMatchRegionP08669930 faldo:begin ?templateMotifSequenceMatchBeginP08669931 .
?templateMotifSequenceMatchBeginP08669931 faldo:position ?templateMotifSequenceMatchBeginPositionP08669926 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669932 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch933 faldo:location ?targetMotifMatchRegionMatch934 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084936 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084927 .
?targetMotifMatchRegionMatch934 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084935 .
?targetMotifMatchRegionMatchBeginMF_04084935 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084928 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084936 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084925, 1, (STRLEN(?templateMotifCigarP08669MF_04084925) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084925, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionP08669926) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1937) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084927, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084927) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084927, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1937), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084927, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084927) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084927, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1937), '}'), '')))), '[^-]', ''))) AS ?step2938) .
BIND(((?step2938 + ?targetMotifMatchRegionMatchBeginPositionMF_04084928) - 1) AS ?thisPositionOn283) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084925, 1, (STRLEN(?templateMotifCigarP08669MF_04084925) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084925, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionP08669926) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1939) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084927, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084927) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084927, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1939), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084927, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084927) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084927, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1939), '}'), '')))), '[^-]', ''))) AS ?step2940) .
BIND(((?step2940 + ?targetMotifMatchRegionMatchBeginPositionMF_04084928) - 1) AS ?thisPositionOn284) .
BIND(?this AS ?pfs3t941) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn283))) AS ?pfsb281) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn284))) AS ?pfse282) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn283, (?thisPositionOn284 - ?thisPositionOn283)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a280')) AS ?annotation280) .
BIND(?this AS ?pfs279) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch946 faldo:location ?templateMotifSequenceMatchRegionP08669947 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669949 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084942 .
?templateMotifSequenceMatchRegionP08669947 faldo:begin ?templateMotifSequenceMatchBeginP08669948 .
?templateMotifSequenceMatchBeginP08669948 faldo:position ?templateMotifSequenceMatchBeginPositionP08669943 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669949 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch950 faldo:location ?targetMotifMatchRegionMatch951 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084953 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084944 .
?targetMotifMatchRegionMatch951 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084952 .
?targetMotifMatchRegionMatchBeginMF_04084952 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084945 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084953 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084942, 1, (STRLEN(?templateMotifCigarP08669MF_04084942) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084942, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionP08669943) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1954) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084944, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084944) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084944, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1954), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084944, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084944) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084944, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1954), '}'), '')))), '[^-]', ''))) AS ?step2955) .
BIND(((?step2955 + ?targetMotifMatchRegionMatchBeginPositionMF_04084945) - 1) AS ?thisPositionOn289) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084942, 1, (STRLEN(?templateMotifCigarP08669MF_04084942) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084942, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP08669943) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1956) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084944, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084944) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084944, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1956), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084944, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084944) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084944, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1956), '}'), '')))), '[^-]', ''))) AS ?step2957) .
BIND(((?step2957 + ?targetMotifMatchRegionMatchBeginPositionMF_04084945) - 1) AS ?thisPositionOn290) .
BIND(?this AS ?pfs3t958) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn289))) AS ?pfsb287) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn290))) AS ?pfse288) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn289, (?thisPositionOn290 - ?thisPositionOn289)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a286')) AS ?annotation286) .
BIND(?this AS ?pfs285) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch963 faldo:location ?templateMotifSequenceMatchRegionP08669964 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669966 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084959 .
?templateMotifSequenceMatchRegionP08669964 faldo:begin ?templateMotifSequenceMatchBeginP08669965 .
?templateMotifSequenceMatchBeginP08669965 faldo:position ?templateMotifSequenceMatchBeginPositionP08669960 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669966 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch967 faldo:location ?targetMotifMatchRegionMatch968 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084970 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084961 .
?targetMotifMatchRegionMatch968 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084969 .
?targetMotifMatchRegionMatchBeginMF_04084969 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084962 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084970 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084959, 1, (STRLEN(?templateMotifCigarP08669MF_04084959) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084959, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionP08669960) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1971) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084961, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084961) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084961, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1971), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084961, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084961) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084961, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1971), '}'), '')))), '[^-]', ''))) AS ?step2972) .
BIND(((?step2972 + ?targetMotifMatchRegionMatchBeginPositionMF_04084962) - 1) AS ?thisPositionOn295) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084959, 1, (STRLEN(?templateMotifCigarP08669MF_04084959) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084959, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP08669960) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1973) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084961, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084961) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084961, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1973), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084961, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084961) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084961, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1973), '}'), '')))), '[^-]', ''))) AS ?step2974) .
BIND(((?step2974 + ?targetMotifMatchRegionMatchBeginPositionMF_04084962) - 1) AS ?thisPositionOn296) .
BIND(?this AS ?pfs3t975) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn295))) AS ?pfsb293) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn296))) AS ?pfse294) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn295, (?thisPositionOn296 - ?thisPositionOn295)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a292')) AS ?annotation292) .
BIND(?this AS ?pfs291) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch980 faldo:location ?templateMotifSequenceMatchRegionP08669981 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08669983 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084976 .
?templateMotifSequenceMatchRegionP08669981 faldo:begin ?templateMotifSequenceMatchBeginP08669982 .
?templateMotifSequenceMatchBeginP08669982 faldo:position ?templateMotifSequenceMatchBeginPositionP08669977 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP08669983 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch984 faldo:location ?targetMotifMatchRegionMatch985 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04084987 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084978 .
?targetMotifMatchRegionMatch985 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04084986 .
?targetMotifMatchRegionMatchBeginMF_04084986 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084979 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04084987 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084976, 1, (STRLEN(?templateMotifCigarP08669MF_04084976) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084976, CONCAT('^(?:-*[^-]){', STR(((279 - ?templateMotifSequenceMatchBeginPositionP08669977) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1988) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084978, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084978) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084978, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1988), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084978, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084978) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084978, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1988), '}'), '')))), '[^-]', ''))) AS ?step2989) .
BIND(((?step2989 + ?targetMotifMatchRegionMatchBeginPositionMF_04084979) - 1) AS ?thisPositionOn301) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084976, 1, (STRLEN(?templateMotifCigarP08669MF_04084976) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084976, CONCAT('^(?:-*[^-]){', STR(((292 - ?templateMotifSequenceMatchBeginPositionP08669977) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1990) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084978, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084978) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084978, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1990), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084978, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084978) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084978, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1990), '}'), '')))), '[^-]', ''))) AS ?step2991) .
BIND(((?step2991 + ?targetMotifMatchRegionMatchBeginPositionMF_04084979) - 1) AS ?thisPositionOn302) .
BIND(?this AS ?pfs3t992) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn301))) AS ?pfsb299) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn302))) AS ?pfse300) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn301, (?thisPositionOn302 - ?thisPositionOn301)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a298')) AS ?annotation298) .
BIND(?this AS ?pfs297) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch997 faldo:location ?templateMotifSequenceMatchRegionP08669998 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP086691000 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_04084993 .
?templateMotifSequenceMatchRegionP08669998 faldo:begin ?templateMotifSequenceMatchBeginP08669999 .
?templateMotifSequenceMatchBeginP08669999 faldo:position ?templateMotifSequenceMatchBeginPositionP08669994 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP086691000 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch1001 faldo:location ?targetMotifMatchRegionMatch1002 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_040841004 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_04084995 .
?targetMotifMatchRegionMatch1002 faldo:begin ?targetMotifMatchRegionMatchBeginMF_040841003 .
?targetMotifMatchRegionMatchBeginMF_040841003 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04084996 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_040841004 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084993, 1, (STRLEN(?templateMotifCigarP08669MF_04084993) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084993, CONCAT('^(?:-*[^-]){', STR(((301 - ?templateMotifSequenceMatchBeginPositionP08669994) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11005) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084995, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084995) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084995, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11005), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084995, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084995) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084995, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11005), '}'), '')))), '[^-]', ''))) AS ?step21006) .
BIND(((?step21006 + ?targetMotifMatchRegionMatchBeginPositionMF_04084996) - 1) AS ?thisPositionOn307) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_04084993, 1, (STRLEN(?templateMotifCigarP08669MF_04084993) - STRLEN(REPLACE(?templateMotifCigarP08669MF_04084993, CONCAT('^(?:-*[^-]){', STR(((310 - ?templateMotifSequenceMatchBeginPositionP08669994) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11007) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_04084995, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084995) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084995, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11007), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_04084995, 1, (STRLEN(?targetMotifMatchCigarP08669MF_04084995) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_04084995, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11007), '}'), '')))), '[^-]', ''))) AS ?step21008) .
BIND(((?step21008 + ?targetMotifMatchRegionMatchBeginPositionMF_04084996) - 1) AS ?thisPositionOn308) .
BIND(?this AS ?pfs3t1009) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn307))) AS ?pfsb305) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn308))) AS ?pfse306) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn307, (?thisPositionOn308 - ?thisPositionOn307)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a304')) AS ?annotation304) .
BIND(?this AS ?pfs303) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1014 faldo:location ?templateMotifSequenceMatchRegionP086691015 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP086691017 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_040841010 .
?templateMotifSequenceMatchRegionP086691015 faldo:begin ?templateMotifSequenceMatchBeginP086691016 .
?templateMotifSequenceMatchBeginP086691016 faldo:position ?templateMotifSequenceMatchBeginPositionP086691011 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP086691017 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch1018 faldo:location ?targetMotifMatchRegionMatch1019 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_040841021 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_040841012 .
?targetMotifMatchRegionMatch1019 faldo:begin ?targetMotifMatchRegionMatchBeginMF_040841020 .
?targetMotifMatchRegionMatchBeginMF_040841020 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_040841013 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_040841021 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_040841010, 1, (STRLEN(?templateMotifCigarP08669MF_040841010) - STRLEN(REPLACE(?templateMotifCigarP08669MF_040841010, CONCAT('^(?:-*[^-]){', STR(((364 - ?templateMotifSequenceMatchBeginPositionP086691011) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11022) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_040841012, 1, (STRLEN(?targetMotifMatchCigarP08669MF_040841012) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_040841012, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11022), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_040841012, 1, (STRLEN(?targetMotifMatchCigarP08669MF_040841012) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_040841012, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11022), '}'), '')))), '[^-]', ''))) AS ?step21023) .
BIND(((?step21023 + ?targetMotifMatchRegionMatchBeginPositionMF_040841013) - 1) AS ?thisPositionOn313) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_040841010, 1, (STRLEN(?templateMotifCigarP08669MF_040841010) - STRLEN(REPLACE(?templateMotifCigarP08669MF_040841010, CONCAT('^(?:-*[^-]){', STR(((385 - ?templateMotifSequenceMatchBeginPositionP086691011) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11024) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_040841012, 1, (STRLEN(?targetMotifMatchCigarP08669MF_040841012) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_040841012, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11024), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_040841012, 1, (STRLEN(?targetMotifMatchCigarP08669MF_040841012) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_040841012, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11024), '}'), '')))), '[^-]', ''))) AS ?step21025) .
BIND(((?step21025 + ?targetMotifMatchRegionMatchBeginPositionMF_040841013) - 1) AS ?thisPositionOn314) .
BIND(?this AS ?pfs3t1026) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn313))) AS ?pfsb311) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn314))) AS ?pfse312) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn313, (?thisPositionOn314 - ?thisPositionOn313)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a310')) AS ?annotation310) .
BIND(?this AS ?pfs309) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1033 faldo:location ?templateMotifSequenceMatchRegionP086691034 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP086691036 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08669MF_040841029 .
?templateMotifSequenceMatchRegionP086691034 faldo:begin ?templateMotifSequenceMatchBeginP086691035 .
?templateMotifSequenceMatchBeginP086691035 faldo:position ?templateMotifSequenceMatchBeginPositionP086691030 ;
faldo:reference isoform:P08669-1 .
?templateMotifSequenceProfileAlignmentOperationP086691036 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch1037 faldo:location ?targetMotifMatchRegionMatch1038 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_040841040 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08669MF_040841031 .
?targetMotifMatchRegionMatch1038 faldo:begin ?targetMotifMatchRegionMatchBeginMF_040841039 .
?targetMotifMatchRegionMatchBeginMF_040841039 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_040841032 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_040841040 edam:has_input signature:MF_04084 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism up:scientificName ?name1027 .
FILTER (CONTAINS(?containsName1028, ?name1027)) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_040841029, 1, (STRLEN(?templateMotifCigarP08669MF_040841029) - STRLEN(REPLACE(?templateMotifCigarP08669MF_040841029, CONCAT('^(?:-*[^-]){', STR(((188 - ?templateMotifSequenceMatchBeginPositionP086691030) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11041) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_040841031, 1, (STRLEN(?targetMotifMatchCigarP08669MF_040841031) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_040841031, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11041), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_040841031, 1, (STRLEN(?targetMotifMatchCigarP08669MF_040841031) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_040841031, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11041), '}'), '')))), '[^-]', ''))) AS ?step21042) .
BIND(((?step21042 + ?targetMotifMatchRegionMatchBeginPositionMF_040841032) - 1) AS ?thisPositionOn319) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08669MF_040841029, 1, (STRLEN(?templateMotifCigarP08669MF_040841029) - STRLEN(REPLACE(?templateMotifCigarP08669MF_040841029, CONCAT('^(?:-*[^-]){', STR(((216 - ?templateMotifSequenceMatchBeginPositionP086691030) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11043) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08669MF_040841031, 1, (STRLEN(?targetMotifMatchCigarP08669MF_040841031) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_040841031, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11043), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08669MF_040841031, 1, (STRLEN(?targetMotifMatchCigarP08669MF_040841031) - STRLEN(REPLACE(?targetMotifMatchCigarP08669MF_040841031, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11043), '}'), '')))), '[^-]', ''))) AS ?step21044) .
BIND(((?step21044 + ?targetMotifMatchRegionMatchBeginPositionMF_040841032) - 1) AS ?thisPositionOn320) .
BIND(?this AS ?pfs4t1045) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn319))) AS ?pfsb317) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn320))) AS ?pfse318) .
FILTER ((BOUND(?thisPositionOn319) && BOUND(?thisPositionOn320))) .
BIND(URI(CONCAT(STR(?this), '#MF_04084a316')) AS ?annotation316) .
BIND(?this AS ?pfs315) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism up:scientificName ?name1046 .
FILTER (CONTAINS(?containsName1047, ?name1046)) .
BIND(?this AS ?case30) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism up:scientificName ?name1048 .
FILTER (! (CONTAINS(?containsName1049, ?name1048))) .
BIND(?this AS ?case31) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism up:scientificName ?name1050 .
FILTER (CONTAINS(?containsName1051, ?name1050)) .
BIND(?this AS ?caseWithTag1052) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag1052, ?UNBOUND_VARIABLE) AS ?case32) .
}
"xsd:string |
