HAMAP-Scan

only find matches (or) scan and Annotate

Scan (a) sequence(s) against HAMAP profiles
Enter your sequence(s) or a UniProtKB (Swiss-Prot or TrEMBL) ID(s) or AC(s)
max. 10 sequences:
You will get the list of profiles that match your sequence(s).


This form should be used to submit several protein sequences (max 99'999) to HAMAP-Scan Annotate. Your sequence(s) will be scanned against the HAMAP profile collection. Sequences, selected on the base of their match score, will be processed by our automatic annotation system to be partly or completely annotated in the UniProtKB format by profile-associated annotation rules. To get more information about our automatic annotation system please consult the [UniRule format document].

You will receive an e-mail when your HAMAP-Scan results are available, even if no matches have been found. Your results will be available for one month on our server (see HAMAP-Scan results).
Note: Text boxes labeled with a * are obligatory.

Note: If you use the results of this server please cite: HAMAP in 2013, new developments in the protein family classification and annotation system. Nucleic Acids Res. 2013 Jan;41(Database issue):D584-9.
Submit sequence(s) to HAMAP-Scan Annotate
Enter a valid numeric TaxID from the NCBI or the NEWT taxonomy database.

This TaxID must represent the organism from which the sequences originate. If this organism is not yet listed in the taxonomy database, please enter the TaxID of a very similar species, or the TaxID of a more general taxonomic node (e.g. for Actinobacteria). HAMAP profiles currently cover mainly bacteria and archaea, but you may try to scan sequences from any species.
NCBI TaxID: *
A file in FASTA format containing the PROTEIN sequence(s) to be scanned.

File name: *
Enter a password (or leave blank). If you enter a password, then the same password will be requested before you can download your results.

Password:
Enter your e-mail address. You will be notified by e-mail once the job you requested is completed.

E-mail: *