HAMAP proteomes: Bacteria

Proteomes by kingdom: [Summary] Bacteria Archaea Plastids

The UniProt Knowledgebase currently contains 1481 complete proteomes of the kingdom Bacteria that are covered by the HAMAP project. Whole-genome shotgun (WGS) and draft sequences are not covered by the HAMAP project. Only closed genomes are entered into the HAMAP database and are considered for annotation.

To retrieve information from a particular organism (description, genome reference paper(s), taxonomy or a file containing all the UniProt Knowledgebase entries)
or to perform a BLAST search against all potential proteins from this organism, click on the species code.

Uniprot release 2012_01 of 25-Jan-2012

Statistics
Species
Species code

Total number
of entries
Number of UniProtKB/
Swiss-Prot entries
Number of UniProtKB/
TrEMBL entries
Status in UniProtKB/
Swiss-Prot






Acaryochloris marina (strain MBIC 11017) ACAM1 8172 322 7850
   3%
Accumulibacter phosphatis (strain UW-1) ACCPU 4438 0 4438
0%
Acetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153) ACEP3 2906 4 2902
0%
Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) ACEAZ 2276 1 2275
0%
Acholeplasma laidlawii (strain PG-8A) ACHLI 1380 146 1234
   10%
Achromobacter xylosoxidans (strain A8) ACHXA 6798 1 6797
0%
Acidaminococcus fermentans (strain ATCC 25085 / DSM 20731 / VR4) ACIFV 2016 12 2004
0%
Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) ACIFD 1935 8 1927
0%
Acidiphilium cryptum (strain JF-5) ACICJ 3521 262 3259
   7%
Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) ACIMA 3856 0 3856
0%
Acidithiobacillus caldus (strain SM-1) ACICS 3062 0 3062
0%
Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) ACIF2 3120 209 2911
   6%
Acidithiobacillus ferrooxidans (strain ATCC 53993) ACIF5 2747 207 2540
   7%
Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) ACIC5 3363 143 3220
   4%
Acidobacterium sp. (strain MP5ACTX9) ACISM 4514 0 4514
0%
Acidothermus cellulolyticus (strain ATCC 43068 / 11B) ACIC1 2157 210 1947
   9%
Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) ACIAP 4718 0 4718
0%
Acidovorax citrulli (strain AAC00-1) ACIAC 4602 314 4288
   6%
Acidovorax ebreus (strain TPSY) ACIET 3461 248 3213
   7%
Acidovorax sp. (strain JS42) ACISJ 4045 305 3740
   7%
Acinetobacter baumannii (strain 1656-2) ACIB1 3744 0 3744
0%
Acinetobacter baumannii (strain AB0057) ACIB5 3732 288 3444
   7%
Acinetobacter baumannii (strain AB307-0294) ACIB3 3452 292 3160
   8%
Acinetobacter baumannii (strain ACICU) ACIBC 3745 293 3452
   7%
Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) ACIBT 3798 306 3492
   8%
Acinetobacter baumannii (strain AYE) ACIBY 3652 309 3343
   8%
Acinetobacter baumannii (strain SDF) ACIBS 2767 303 2464
   10%
Acinetobacter baumannii (strain TCDC-AB0715) ACIBD 3712 0 3712
0%
Acinetobacter calcoaceticus (strain PHEA-2) ACICP 3598 2 3596
0%
Acinetobacter sp. (strain ADP1) ACIAD 3293 480 2813
   14%
Acinetobacter sp. (strain JCM 1667 / KCTC 23045 / DR1) ACISD 3873 1 3872
0%
Actinobacillus pleuropneumoniae serotype 3 (strain JL03) ACTPJ 2026 379 1647
   18%
Actinobacillus pleuropneumoniae serotype 5b (strain L20) ACTP2 2004 425 1579
   21%
Actinobacillus pleuropneumoniae serotype 7 (strain AP76) ACTP7 2113 381 1732
   18%
Actinobacillus succinogenes (strain ATCC 55618 / 130Z) ACTSZ 2077 400 1677
   19%
Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) ACTMD 6912 9 6903
0%
Aerococcus urinae (strain ACS-120-V-Col10a) AERUA 1684 1 1683
0%
Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) AERHH 4121 463 3658
   11%
Aeromonas salmonicida (strain A449) AERS4 4327 451 3876
   10%
Aeromonas veronii (strain B565) AERVB 4009 0 4009
0%
Aggregatibacter actinomycetemcomitans serotype C (strain D11S-1) AGGAD 2126 1 2125
0%
Aggregatibacter aphrophilus (strain NJ8700) AGGAN 2223 7 2216
0%
Agrobacterium radiobacter (strain K84 / ATCC BAA-868) AGRRK 6675 280 6395
   4%
Agrobacterium sp. (strain H13-3) AGRSH 5329 0 5329
0%
Agrobacterium tumefaciens (strain C58 / ATCC 33970) AGRT5 5344 629 4715
   11%
Agrobacterium vitis (strain S4 / ATCC BAA-846) AGRVS 5353 282 5071
   5%
Akkermansia muciniphila (strain ATCC BAA-835) AKKM8 2137 133 2004
   6%
Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) ALCBS 2752 377 2375
   13%
Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) ALIDK 4620 0 4620
0%
Alicycliphilus denitrificans (strain JCM 14587 / BC) ALIDB 4484 0 4484
0%
Alicyclobacillus acidocaldarius (strain Tc-4-1) ALIAT 3170 0 3170
0%
Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) ALIAD 3059 5 3054
0%
Aliivibrio salmonicida (strain LFI1238) ALISL 3513 424 3089
   12%
Alkalilimnicola ehrlichei (strain MLHE-1) ALHEH 2862 368 2494
   12%
Alkaliphilus metalliredigens (strain QYMF) ALKMQ 4467 307 4160
   6%
Alkaliphilus oremlandii (strain OhILAs) ALKOO 2828 267 2561
   9%
Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) ALLVD 3211 42 3169
   1%
Alteromonas macleodii (strain DSM 17117 / Deep ecotype) ALTMD 3729 221 3508
   5%
Alteromonas sp. (strain SN2) ALTSS 4342 2 4340
0%
Aminobacterium colombiense (strain DSM 12261 / ALA-1) AMICL 1872 1 1871
0%
Ammonifex degensii (strain DSM 10501 / KC4) AMMDK 2049 0 2049
0%
Amoebophilus asiaticus (strain 5a2) AMOA5 1253 113 1140
   9%
Amycolatopsis mediterranei (strain U-32) AMYMU 9204 3 9201
0%
Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1) AMYSD 4703 0 4703
0%
Anabaena variabilis (strain ATCC 29413 / PCC 7937) ANAVT 5634 462 5172
   8%
Anaerocellum thermophilum (strain DSM 6725 / Z-1320) ANATD 2652 210 2442
   7%
Anaerococcus prevotii (strain ATCC 9321 / DSM 20548 / JCM 6508 / PC1) ANAPD 1795 0 1795
0%
Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) ANATU 3110 2 3108
0%
Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) ANAD2 4460 233 4227
   5%
Anaeromyxobacter dehalogenans (strain 2CP-C) ANADE 4345 311 4034
   7%
Anaeromyxobacter sp. (strain Fw109-5) ANADF 4461 249 4212
   5%
Anaeromyxobacter sp. (strain K) ANASK 4444 245 4199
   5%
Anaplasma centrale (strain Israel) ANACI 919 0 919
0%
Anaplasma marginale (strain Florida) ANAMF 939 110 829
   11%
Anaplasma marginale (strain St. Maries) ANAMM 945 192 753
   20%
Anaplasma phagocytophilum (strain HZ) ANAPZ 1330 160 1170
   12%
Anoxybacillus flavithermus (strain DSM 21510 / WK1) ANOFW 2819 228 2591
   8%
Aquifex aeolicus (strain VF5) AQUAE 776 776 0
Complete
Arcanobacterium haemolyticum (strain ATCC 9345 / DSM 20595 / NBRC 15585 / NCTC 8452 / 11018) ARCHD 1717 2 1715
0%
Arcobacter butzleri (strain RM4018) ARCB4 2254 226 2028
   10%
Arcobacter nitrofigilis (strain ATCC 33309 / DSM 7299 / LMG 7604 / NCTC 12251 / CI) ARCNC 3125 2 3123
0%
Aromatoleum aromaticum (strain EbN1) AROAE 4483 407 4076
   9%
Arthrobacter arilaitensis (strain DSM 16368 / CIP 108037 / JCM 13566 / Re117) ARTAR 3380 0 3380
0%
Arthrobacter aurescens (strain TC1) ARTAT 4565 209 4356
   4%
Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) ARTCA 4587 176 4411
   3%
Arthrobacter phenanthrenivorans (strain DSM 18606 / JCM 16027 / LMG 23796 / Sphe3) ARTPP 4081 0 4081
0%
Arthrobacter sp. (strain FB24) ARTS2 4453 222 4231
   4%
Arthromitus sp. (strain SFB-mouse-Japan) ARTSS 1487 0 1487
0%
Aster yellows witches'-broom phytoplasma (strain AYWB) AYWBP 690 126 564
   18%
Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 / CB 48) ASTEC 0 0 0
Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) ATOPD 1353 2 1351
0%
Azoarcus sp. (strain BH72) AZOSB 3981 371 3610
   9%
Azobacteroides pseudotrichonymphae genomovar. CFP2 AZOPC 847 138 709
   16%
Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) AZOC5 4708 301 4407
   6%
Azospirillum sp. (strain B510) AZOS1 6092 2 6090
0%
Azotobacter vinelandii (strain DJ / ATCC BAA-1303) AZOVD 4990 363 4627
   7%
Bacillus amyloliquefaciens (strain ATCC 23350 / DSM 7 / BCRC 11601 / NBRC 15535 / NRRL B-14393) BACAS 3901 1 3900
0%
Bacillus amyloliquefaciens (strain FZB42) BACA2 3693 492 3201
   13%
Bacillus anthracis BACAN 6614 728 5886
   11%
Bacillus anthracis (strain A0248) BACAA 5291 405 4886
   7%
Bacillus anthracis (strain CDC 684 / NRRL 3495) BACAC 5895 410 5485
   6%
Bacillus atrophaeus (strain 1942) BACA1 4186 1 4185
0%
Bacillus cellulosilyticus (strain ATCC 21833 / DSM 2522 / FERM P-1141 / JCM 9156 / N-4) BACCJ 4253 2 4251
0%
Bacillus cereus (strain 03BB102) BACC3 5598 410 5188
   7%
Bacillus cereus (strain AH187) BACC7 5747 412 5335
   7%
Bacillus cereus (strain AH820) BACC0 5798 402 5396
   6%
Bacillus cereus (strain ATCC 10987) BACC1 5821 590 5231
   10%
Bacillus cereus (strain ATCC 14579 / DSM 31) BACCR 5240 646 4594
   12%
Bacillus cereus (strain B4264) BACC4 5384 413 4971
   7%
Bacillus cereus (strain G9842) BACC2 5844 409 5435
   6%
Bacillus cereus (strain Q1) BACCQ 5459 381 5078
   6%
Bacillus cereus (strain ZK / E33L) BACCZ 5638 560 5078
   9%
Bacillus cereus subsp. cytotoxis (strain NVH 391-98) BACCN 3840 434 3406
   11%
Bacillus cereus var. anthracis (strain CI) BACAI 5522 0 5522
0%
Bacillus clausii (strain KSM-K16) BACSK 4082 496 3586
   12%
Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) BACHD 734 734 0
Complete
Bacillus licheniformis (strain DSM 13 / ATCC 14580) BACLD 4676 562 4114
   12%
Bacillus megaterium (strain ATCC 12872 / QMB1551) BACMQ 5606 16 5590
0%
Bacillus megaterium (strain DSM 319) BACMD 5100 16 5084
0%
Bacillus pseudofirmus (strain OF4) BACPE 4310 53 4257
   1%
Bacillus pumilus (strain SAFR-032) BACP2 3675 425 3250
   11%
Bacillus selenitireducens (strain ATCC 700615 / DSM 15326 / MLS10) BACIE 3231 2 3229
0%
Bacillus subtilis BACSU 4188 4188 0
Complete
Bacillus subtilis (strain BSn5) BACST 4145 1 4144
0%
Bacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 / W23) BACPZ 4053 25 4028
0%
Bacillus thuringiensis (strain Al Hakam) BACAH 4792 393 4399
   8%
Bacillus thuringiensis (strain BMB171) BACT1 5324 0 5324
0%
Bacillus thuringiensis subsp. finitimus (strain YBT-020) BACT0 5739 0 5739
0%
Bacillus thuringiensis subsp. konkukian (strain 97-27) BACHK 567 567 0
Complete
Bacillus tusciae (strain DSM 2912 / NBRC 15312 / T2) BACT2 3135 3 3132
0%
Bacillus weihenstephanensis (strain KBAB4) BACWK 5650 434 5216
   7%
Bacteriovorax marinus (strain ATCC BAA-682 / DSM 15412 / SJ) BACMS 3229 1 3228
0%
Bacteroides fragilis (strain 638R) BACF6 4284 5 4279
0%
Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) BACFN 4234 309 3925
   7%
Bacteroides fragilis (strain YCH46) BACFR 334 334 0
Complete
Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108) BACT6 3240 2 3238
0%
Bacteroides salanitronis (strain DSM 18170 / JCM 13567 / BL78) BACSH 3608 0 3608
0%
Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) BACTN 355 355 0
Complete
Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) BACV8 3982 259 3723
   6%
Bartonella bacilliformis (strain ATCC 35685 / KC583) BARBK 1255 258 997
   20%
Bartonella clarridgeiae (strain CIP 104772 / 73) BARC7 1307 0 1307
0%
Bartonella grahamii (strain as4aup) BARGA 1709 3 1706
0%
Bartonella henselae (strain ATCC 49882 / Houston 1) BARHE 323 323 0
Complete
Bartonella quintana (strain Toulouse) BARQU 312 312 0
Complete
Bartonella tribocorum (strain CIP 105476 / IBS 506) BART1 1962 259 1703
   13%
Baumannia cicadellinicola subsp. Homalodisca coagulata BAUCH 595 266 329
   44%
Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) BDEBA 277 277 0
Complete
Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) BEII9 3774 226 3548
   5%
Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) BEUC1 4195 132 4063
   3%
Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) BIFAA 1629 186 1443
   11%
Bifidobacterium animalis subsp. lactis (strain AD011) BIFA0 1525 143 1382
   9%
Bifidobacterium animalis subsp. lactis (strain BB-12) BIFAB 1640 1 1639
0%
Bifidobacterium animalis subsp. lactis (strain Bl-04 / DGCC2908 / RB 4825 / SD5219) BIFLB 1566 4 1562
0%
Bifidobacterium animalis subsp. lactis (strain DSM 10140 / JCM 10602 / LMG 18314) BIFAS 1565 5 1560
0%
Bifidobacterium animalis subsp. lactis (strain V9) BIFAV 1569 0 1569
0%
Bifidobacterium bifidum (strain PRL2010) BIFBP 1707 0 1707
0%
Bifidobacterium bifidum (strain S17) BIFBS 1783 0 1783
0%
Bifidobacterium breve (strain ACS-071-V-Sch8b) BIFBA 1821 0 1821
0%
Bifidobacterium breve (strain NCIMB 8807 / UCC2003) BIFBU 1826 1 1825
0%
Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) BIFDB 2121 3 2118
0%
Bifidobacterium longum (strain DJO10A) BIFLD 1980 192 1788
   9%
Bifidobacterium longum (strain NCC 2705) BIFLO 298 298 0
Complete
Bifidobacterium longum subsp. infantis (strain 157F) BIFL1 1975 0 1975
0%
Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) BIFLS 3196 188 3008
   5%
Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 / JCM 1217 / NCTC 11818 / E194b) BIFL2 1907 2 1905
0%
Bifidobacterium longum subsp. longum (strain BBMN68) BIFLM 1795 0 1795
0%
Bifidobacterium longum subsp. longum (strain JDM301) BIFLJ 1944 0 1944
0%
Blattabacterium sp. subsp. Blattella germanica (strain Bge) BLASB 586 0 586
0%
Blattabacterium sp. subsp. Periplaneta americana (strain BPLAN) BLASP 581 1 580
0%
Blochmannia floridanus BLOFL 583 284 299
   48%
Blochmannia pennsylvanicus (strain BPEN) BLOPB 610 274 336
   44%
Blochmannia vafer (strain BVAF) BLOVB 587 0 587
0%
Bordetella avium (strain 197N) BORA1 3372 363 3009
   10%
Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) BORBR 520 520 0
Complete
Bordetella parapertussis BORPA 4161 507 3654
   12%
Bordetella pertussis BORPE 3261 511 2750
   15%
Bordetella pertussis (strain CS) BORPC 3274 1 3273
0%
Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) BORPD 4912 306 4606
   6%
Borrelia afzelii (strain PKo) BORAP 1262 191 1071
   15%
Borrelia bissettii (strain DN127) BORBD 817 1 816
0%
Borrelia burgdorferi (Lyme disease spirochete) BORBU 1556 421 1135
   27%
Borrelia burgdorferi (strain JD1) BORBJ 1358 1 1357
0%
Borrelia burgdorferi (strain N40) BORBN 1233 6 1227
0%
Borrelia burgdorferi (strain ZS7) BORBZ 1223 160 1063
   13%
Borrelia duttonii (strain Ly) BORDL 1287 120 1167
   9%
Borrelia garinii BORGA 1262 203 1059
   16%
Borrelia hermsii (strain DAH) BORHD 819 126 693
   15%
Borrelia recurrentis (strain A1) BORRA 977 116 861
   11%
Borrelia turicatae (strain 91E135) BORT9 818 115 703
   14%
Brachybacterium faecium (strain ATCC 43885 / DSM 4810 / NCIB 9860) BRAFD 3062 6 3056
0%
Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) BRAHW 2642 111 2531
   4%
Brachyspira intermedia (strain ATCC 51140 / PWS/A) BRAIP 2869 0 2869
0%
Brachyspira murdochii (strain ATCC 51284 / DSM 12563 / 56-150) BRAM5 2751 0 2751
0%
Brachyspira pilosicoli (strain ATCC BAA-1826 / 95/1000) BRAP9 2301 0 2301
0%
Bradyrhizobium japonicum BRAJA 8253 653 7600
   7%
Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) BRASB 7567 339 7228
   4%
Bradyrhizobium sp. (strain ORS278) BRASO 6701 324 6377
   4%
Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) BREBN 5887 250 5637
   4%
Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) BRESC 3326 0 3326
0%
Brucella abortus (strain 2308) BRUA2 3022 473 2549
   15%
Brucella abortus (strain S19) BRUA1 2993 320 2673
   10%
Brucella abortus biovar 1 (strain 9-941) BRUAB 3077 499 2578
   16%
Brucella canis (strain ATCC 23365 / NCTC 10854) BRUC2 3238 364 2874
   11%
Brucella melitensis (strain M28) BRUMM 3351 0 3351
0%
Brucella melitensis (strain M5-90) BRUM5 2162 0 2162
0%
Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) BRUME 4966 572 4394
   11%
Brucella melitensis biotype 2 (strain ATCC 23457) BRUMB 3125 317 2808
   10%
Brucella microti (strain CCM 4915) BRUMC 3270 0 3270
0%
Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) BRUO2 2820 336 2484
   11%
Brucella suis (strain ATCC 23445 / NCTC 10510) BRUSI 3214 361 2853
   11%
Brucella suis biovar 1 (strain 1330) BRUSU 3256 576 2680
   17%
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) BUCA5 555 249 306
   44%
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) BUCAI 572 572 0
Complete
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain JF98) BUCAJ 477 0 477
0%
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain JF99) BUCAF 590 0 590
0%
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain LL01) BUCA0 577 0 577
0%
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain TLW03) BUCA3 573 0 573
0%
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) BUCAT 553 247 306
   44%
Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) BUCBP 507 507 0
Complete
Buchnera aphidicola subsp. Cinara cedri (strain Cc) BUCCC 362 148 214
   40%
Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) BUCAP 562 562 0
Complete
Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) BURCM 6600 391 6209
   5%
Burkholderia ambifaria (strain MC40-6) BURA4 6690 354 6336
   5%
Burkholderia cenocepacia (strain AU 1054) BURCA 6450 419 6031
   6%
Burkholderia cenocepacia (strain HI2424) BURCH 6898 402 6496
   5%
Burkholderia cenocepacia (strain MC0-3) BURCC 6986 359 6627
   5%
Burkholderia cepacia (strain J2315 / LMG 16656) BURCJ 6993 336 6657
   4%
Burkholderia gladioli (strain BSR3) BURGS 3755 0 3755
0%
Burkholderia glumae (strain BGR1) BURGB 5610 0 5610
0%
Burkholderia mallei (Pseudomonas mallei) BURMA 4797 461 4336
   9%
Burkholderia mallei (strain NCTC 10229) BURM9 4943 353 4590
   7%
Burkholderia mallei (strain NCTC 10247) BURM7 5182 356 4826
   6%
Burkholderia mallei (strain SAVP1) BURMS 4981 346 4635
   6%
Burkholderia multivorans (strain ATCC 17616 / 249) BURM1 7212 332 6880
   4%
Burkholderia phymatum (strain DSM 17167 / STM815) BURP8 7461 333 7128
   4%
Burkholderia phytofirmans (strain DSM 17436 / PsJN) BURPP 7197 338 6859
   4%
Burkholderia pseudomallei (Pseudomonas pseudomallei) BURPS 5717 492 5225
   8%
Burkholderia pseudomallei (strain 1106a) BURP0 7145 374 6771
   5%
Burkholderia pseudomallei (strain 1710b) BURP1 6329 416 5913
   6%
Burkholderia pseudomallei (strain 668) BURP6 7102 362 6740
   5%
Burkholderia rhizoxinica (strain DSM 19002 / CIP 109453 / HKI 454) BURRH 3859 0 3859
0%
Burkholderia sp. (strain 383) BURS3 7715 474 7241
   6%
Burkholderia sp. (strain CCGE1002) BURSC 6866 1 6865
0%
Burkholderia sp. (strain CCGE1003) BURSG 5983 0 5983
0%
Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) BURTA 5561 416 5145
   7%
Burkholderia vietnamiensis (strain G4 / LMG 22486) BURVG 7409 377 7032
   5%
Burkholderia xenovorans (strain LB400) BURXL 8591 438 8153
   5%
Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316) BUTPB 3799 0 3799
0%
Caldicellulosiruptor hydrothermalis (strain DSM 18901 / VKM B-2411 / 108) CALH1 2521 0 2521
0%
Caldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 / I77R1B) CALKI 2463 0 2463
0%
Caldicellulosiruptor kronotskyensis (strain DSM 18902 / VKM B-2412 / 2002) CALK2 2461 0 2461
0%
Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47) CALOO 2184 0 2184
0%
Caldicellulosiruptor owensensis (strain ATCC 700167 / DSM 13100 / OL) CALOW 2133 0 2133
0%
Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) CALS8 2394 251 2143
   10%
Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) CALNY 2089 3 2086
0%
Campylobacter concisus (strain 13826) CAMC1 2063 229 1834
   11%
Campylobacter curvus (strain 525.92) CAMC5 1928 215 1713
   11%
Campylobacter fetus subsp. fetus (strain 82-40) CAMFF 1715 235 1480
   13%
Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) CAMHC 1687 230 1457
   13%
Campylobacter jejuni CAMJE 1623 433 1190
   26%
Campylobacter jejuni (strain RM1221) CAMJR 1836 333 1503
   18%
Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) CAMJD 1712 283 1429
   16%
Campylobacter jejuni subsp. jejuni (strain IA3902) CAMJI 1665 0 1665
0%
Campylobacter jejuni subsp. jejuni (strain S3) CAMJS 1783 0 1783
0%
Campylobacter jejuni subsp. jejuni serotype HS21 (strain M1 / 99/308) CAMJM 1618 0 1618
0%
Campylobacter jejuni subsp. jejuni serotype HS:41 (strain ICDCCJ07001) CAMJC 1531 0 1531
0%
Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) CAMJJ 1748 308 1440
   17%
Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) CAMJ8 1622 307 1315
   18%
Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) CAMLR 1545 191 1354
   12%
Capnocytophaga canimorsus (strain 5) CAPCC 2394 0 2394
0%
Capnocytophaga ochracea (strain ATCC 27872 / DSM 7271 / JCM 12966 / VPI 2845) CAPOD 2171 0 2171
0%
Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) CARHZ 2615 350 2265
   13%
Carnobacterium sp. (strain 17-4) CARS1 2474 0 2474
0%
Carsonella ruddii (strain PV) CARRP 182 29 153
   15%
Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) CATAD 8909 12 8897
0%
Caulobacter crescentus (Caulobacter vibrioides) CAUCR 3720 562 3158
   15%
Caulobacter crescentus (strain NA1000 / CB15N) CAUCN 3824 318 3506
   8%
Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) CAUST 4136 4 4132
0%
Caulobacter sp. (strain K31) CAUSK 5373 277 5096
   5%
Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) CELFA 3760 3 3757
0%
Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) CELFN 3673 3 3670
0%
Cellulophaga algicola (strain DSM 14237 / IC166 / ACAM 630) CELAD 4114 0 4114
0%
Cellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20) CELLC 3281 0 3281
0%
Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) CELLD 4150 0 4150
0%
Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078) CELGA 3153 0 3153
0%
Cellvibrio japonicus (strain Ueda107) CELJU 3711 257 3454
   6%
Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) CHIPD 7179 2 7177
0%
Chlamydia muridarum CHLMU 915 412 503
   45%
Chlamydia pneumoniae (Chlamydophila pneumoniae) CHLPN 1570 425 1145
   27%
Chlamydia trachomatis CHLTR 895 414 481
   46%
Chlamydia trachomatis (strain L2c) CHLTC 954 0 954
0%
Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B) CHLTA 917 239 678
   26%
Chlamydia trachomatis serovar B (strain Jali20/OT) CHLTJ 883 4 879
0%
Chlamydia trachomatis serovar B (strain TZ1A828/OT) CHLTZ 888 2 886
0%
Chlamydia trachomatis serovar D (strain D-EC) CHLTD 878 0 878
0%
Chlamydia trachomatis serovar D (strain D-LC) CHLTL 878 0 878
0%
Chlamydia trachomatis serovar E (strain E/11023) CHLT1 926 0 926
0%
Chlamydia trachomatis serovar E (strain E/150) CHLT5 927 0 927
0%
Chlamydia trachomatis serovar E (strain Sweden2) CHLTS 882 2 880
0%
Chlamydia trachomatis serovar G (strain G/11074) CHLTG 919 0 919
0%
Chlamydia trachomatis serovar G (strain G/11222) CHLT0 927 0 927
0%
Chlamydia trachomatis serovar G (strain G/9301) CHLT9 921 1 920
0%
Chlamydia trachomatis serovar G (strain G/9768) CHLT7 920 0 920
0%
Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) CHLT2 884 229 655
   25%
Chlamydia trachomatis serovar L2b (strain UCH-1/proctitis) CHLTB 883 211 672
   23%
Chlamydophila abortus CHLAB 932 235 697
   25%
Chlamydophila caviae CHLCV 1005 268 737
   26%
Chlamydophila felis (strain Fe/C-56) CHLFF 1013 225 788
   22%
Chlamydophila pecorum (strain ATCC VR-628 / E58) CHLPE 988 0 988
0%
Chlamydophila pneumoniae (strain LPCoLN) CHLPP 1105 0 1105
0%
Chlamydophila psittaci (strain ATCC VR-125 / 6BC) CHLP6 975 7 968
0%
Chlamydophila psittaci (strain RD1) CHLP1 951 0 951
0%
Chlorobaculum parvum (strain NCIB 8327) CHLP8 2044 263 1781
   12%
Chlorobium chlorochromatii (strain CaD3) CHLCH 1986 295 1691
   14%
Chlorobium limicola (strain DSM 245 / NBRC 103803) CHLL2 2419 238 2181
   9%
Chlorobium phaeobacteroides (strain BS1) CHLPB 2434 222 2212
   9%
Chlorobium phaeobacteroides (strain DSM 266) CHLPD 2579 276 2303
   10%
Chlorobium tepidum CHLTE 2250 416 1834
   18%
Chloroflexus aggregans (strain MD-66 / DSM 9485) CHLAD 3725 185 3540
   4%
Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) CHLSY 4153 181 3972
   4%
Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) CHLAA 3850 232 3618
   6%
Chloroherpeton thalassium (strain ATCC 35110 / GB-78) CHLT3 2708 207 2501
   7%
Chromobacterium violaceum CHRVO 4397 514 3883
   11%
Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) CHRSD 3298 399 2899
   12%
Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) CITK8 5019 677 4342
   13%
Citrobacter rodentium (strain ICC168) CITRI 4792 13 4779
0%
Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) CLAM3 3078 192 2886
   6%
Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) CLAMS 3057 170 2887
   5%
Cloacamonas acidaminovorans CLOAI 1813 0 1813
0%
Clostridiales genomosp. BVAB3 (strain UPII9-5) CLOB3 1566 0 1566
0%
Clostridium acetobutylicum CLOAB 3847 554 3293
   14%
Clostridium acetobutylicum (strain EA 2018) CLOAE 3912 0 3912
0%
Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) CLOB8 5003 321 4682
   6%
Clostridium botulinum (strain 230613 / Type F) CLOB2 3525 0 3525
0%
Clostridium botulinum (strain 657 / Type Ba4) CLOB6 3977 254 3723
   6%
Clostridium botulinum (strain Alaska E43 / Type E3) CLOBA 3254 290 2964
   8%
Clostridium botulinum (strain ATCC 19397 / Type A) CLOB1 3546 310 3236
   8%
Clostridium botulinum (strain Eklund 17B / Type B) CLOBB 3473 284 3189
   8%
Clostridium botulinum (strain H04402 065 / Type A5) CLOB0 3688 0 3688
0%
Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) CLOBH 4237 289 3948
   6%
Clostridium botulinum (strain Kyoto / Type A2) CLOBJ 3860 258 3602
   6%
Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) CLOBL 3653 311 3342
   8%
Clostridium botulinum (strain Loch Maree / Type A3) CLOBM 3981 285 3696
   7%
Clostridium botulinum (strain Okra / Type B1) CLOBK 3844 287 3557
   7%
Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) CLOCE 3287 208 3079
   6%
Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) CLOC7 4211 4 4207
0%
Clostridium difficile (strain 630) CLOD6 3784 291 3493
   7%
Clostridium difficile (strain CD196) CLODC 3453 3 3450
0%
Clostridium difficile (strain QCD-32g58) CLODQ 0 0 0
Clostridium difficile (strain R20291) CLODR 3505 4 3501
0%
Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) CLOK5 3828 284 3544
   7%
Clostridium kluyveri (strain NBRC 12016) CLOK1 3496 213 3283
   6%
Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC) CLOLD 4149 0 4149
0%
Clostridium novyi (strain NT) CLONN 2305 308 1997
   13%
Clostridium perfringens CLOPE 2721 467 2254
   17%
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) CLOP1 2873 358 2515
   12%
Clostridium perfringens (strain SM101 / Type A) CLOPS 2558 338 2220
   13%
Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) CLOPH 3891 259 3632
   6%
Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) CLOSW 4133 2 4131
0%
Clostridium sp. (strain SY8519) CLOSS 2601 0 2601
0%
Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) CLOSD 2572 12 2560
0%
Clostridium tetani CLOTE 2415 332 2083
   13%
Clostridium thermocellum (strain ATCC 27405 / DSM 1237) CLOTH 3012 295 2717
   9%
Clostridium thermocellum (strain DSM 1313 / LMG 6656 / LQ8) CLOTL 2881 0 2881
0%
Collimonas fungivorans (strain Ter331) COLFT 4429 0 4429
0%
Colwellia psychrerythraea (strain 34H / ATCC BAA-681) COLP3 4872 438 4434
   8%
Comamonas testosteroni (strain CNB-2) COMT2 4781 0 4781
0%
Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) CONWI 5912 4 5908
0%
Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) COPPD 1481 102 1379
   6%
Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) CORAD 3110 0 3110
0%
Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 / PW2) CORGP 1768 0 1768
0%
Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) CORA7 2508 159 2349
   6%
Corynebacterium diphtheriae CORDI 2264 334 1930
   14%
Corynebacterium efficiens COREF 2945 409 2536
   13%
Corynebacterium glutamicum (Brevibacterium flavum) CORGL 3931 494 3437
   12%
Corynebacterium glutamicum (strain R) CORGB 3078 295 2783
   9%
Corynebacterium jeikeium (strain K411) CORJK 2064 274 1790
   13%
Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) CORK4 2018 127 1891
   6%
Corynebacterium pseudotuberculosis (strain 1002) CORP1 2090 1 2089
0%
Corynebacterium pseudotuberculosis (strain C231) CORP2 2090 3 2087
0%
Corynebacterium pseudotuberculosis (strain FRC41) CORPF 2110 1 2109
0%
Corynebacterium pseudotuberculosis (strain I19) CORP9 2041 0 2041
0%
Corynebacterium resistens (strain DSM 45100 / JCM 12819 / GTC 2026) CORRG 2142 0 2142
0%
Corynebacterium ulcerans (strain BR-AD22) CORUB 2333 0 2333
0%
Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) CORU7 2011 151 1860
   7%
Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131) CORVD 2972 0 2972
0%
Coxiella burnetii COXBU 1815 395 1420
   21%
Coxiella burnetii (strain CbuG_Q212) COXB2 1831 221 1610
   12%
Coxiella burnetii (strain CbuK_Q154) COXB1 1915 221 1694
   11%
Coxiella burnetii (strain Dugway 5J108-111) COXBN 2029 290 1739
   14%
Coxiella burnetii (strain RSA 331 / Henzerling II) COXBR 1891 283 1608
   14%
Croceibacter atlanticus (strain ATCC BAA-628 / HTCC2559 / KCTC 12090) CROAH 2702 0 2702
0%
Cronobacter sakazakii (strain ATCC BAA-894) CROS8 4421 621 3800
   14%
Cronobacter turicensis (strain DSM 18703 / LMG 23827 / z3032) CROTZ 4450 16 4434
0%
Cryptobacterium curtum (strain ATCC 700683 / DSM 15641 / 12-3) CRYCD 1355 0 1355
0%
Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) CUPNH 6614 462 6152
   6%
Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) CUPPJ 6433 458 5975
   7%
Cupriavidus taiwanensis (strain R1 / LMG 19424) CUPTR 5838 316 5522
   5%
cyanobacterium UCYN-A UCYNA 1198 0 1198
0%
Cyanothece sp. (strain ATCC 51142) CYAA5 5239 237 5002
   4%
Cyanothece sp. (strain PCC 7424) CYAP7 5656 271 5385
   4%
Cyanothece sp. (strain PCC 7425 / ATCC 29141) CYAP4 5232 234 4998
   4%
Cyanothece sp. (strain PCC 7822) CYAP2 6559 0 6559
0%
Cyanothece sp. (strain PCC 8801) CYAP8 4335 261 4074
   6%
Cyanothece sp. (strain PCC 8802) CYAP0 4405 0 4405
0%
Cyclobacterium marinum (strain ATCC 25205 / DSM 745) CYCMS 4983 0 4983
0%
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) CYTH3 3771 246 3525
   6%
Dechloromonas aromatica (strain RCB) DECAR 4155 445 3710
   10%
Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) DEFDS 2338 0 2338
0%
Dehalococcoides ethenogenes (strain 195) DEHE1 1502 238 1264
   15%
Dehalococcoides sp. (strain BAV1) DEHSB 1355 200 1155
   14%
Dehalococcoides sp. (strain CBDB1) DEHSC 1454 238 1216
   16%
Dehalococcoides sp. (strain GT) DEHSG 1378 0 1378
0%
Dehalococcoides sp. (strain VS) DEHSV 1426 2 1424
0%
Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) DEHLB 1619 1 1618
0%
Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) DEIDV 3452 166 3286
   4%
Deinococcus geothermalis (strain DSM 11300) DEIGD 2813 261 2552
   9%
Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34) DEIML 3262 0 3262
0%
Deinococcus proteolyticus (strain ATCC 35074 / DSM 20540 / JCM 6276 / NBRC 101906 / NCIMB 13154 / VKM Ac-1939 / CCM 2703) DEIPM 2652 2 2650
0%
Deinococcus radiodurans DEIRA 3085 500 2585
   16%
Delftia acidovorans (strain DSM 14801 / SPH-1) DELAS 5968 246 5722
   4%
Delftia sp. (strain Cs1-4) DELSC 5855 0 5855
0%
Denitrovibrio acetiphilus (strain DSM 12809 / N2460) DENA2 2901 1 2900
0%
Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) DESB2 3268 1 3267
0%
Desulfatibacillum alkenivorans (strain AK-01) DESAA 5198 177 5021
   3%
Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) DESHD 4852 244 4608
   5%
Desulfitobacterium hafniense (strain Y51) DESHY 5014 312 4702
   6%
Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) DESAR 2859 0 2859
0%
Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) DESAH 4782 157 4625
   3%
Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) DESPD 3259 0 3259
0%
Desulfococcus oleovorans (strain DSM 6200 / Hxd3) DESOH 3255 190 3065
   5%
Desulfohalobium retbaense (strain DSM 5692) DESRD 2455 0 2455
0%
Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) DESBD 3421 1 3420
0%
Desulforudis audaxviator (strain MP104C) DESAP 2136 202 1934
   9%
Desulfotalea psychrophila DESPS 3233 320 2913
   9%
Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) DESAS 4016 0 4016
0%
Desulfotomaculum carboxydivorans (strain DSM 14880 / VKM B-2319 / CO-1-SRB) DESCC 2620 0 2620
0%
Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) DESK7 3385 0 3385
0%
Desulfotomaculum reducens (strain MI-1) DESRM 3220 283 2937
   8%
Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) DESRL 3763 0 3763
0%
Desulfovibrio aespoeensis (strain ATCC 700646 / DSM 10631 / Aspo-2) DESAO 3269 0 3269
0%
Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) DESDA 2345 194 2151
   8%
Desulfovibrio desulfuricans (strain G20) DESDG 3220 295 2925
   9%
Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) DESMR 4663 164 4499
   3%
Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) DESAD 3807 194 3613
   5%
Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) DESVH 3517 370 3147
   10%
Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) DESVM 3178 220 2958
   6%
Desulfovibrio vulgaris (strain RCH1) DESVR 3214 0 3214
0%
Desulfovibrio vulgaris subsp. vulgaris (strain DP4) DESVV 3085 276 2809
   8%
Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) DESIS 2551 2 2549
0%
Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) DESAT 2595 0 2595
0%
Desulfurobacterium thermolithotrophum (strain DSM 11699 / BSA) DESTD 1496 0 1496
0%
Dichelobacter nodosus (strain VCS1703A) DICNV 1273 230 1043
   18%
Dickeya dadantii (strain 3937) DICD3 4532 62 4470
   1%
Dickeya dadantii (strain Ech586) DICD5 4141 7 4134
0%
Dickeya dadantii (strain Ech703) DICDC 3961 16 3945
0%
Dickeya zeae (strain Ech1591) DICZE 4131 12 4119
0%
Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) DICT6 1913 155 1758
   8%
Dictyoglomus turgidum (strain Z-1310 / DSM 6724) DICTD 1743 150 1593
   8%
Dinoroseobacter shibae (strain DFL 12) DINSH 4086 275 3811
   6%
Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) DYAFD 5703 1 5702
0%
Edwardsiella ictaluri (strain 93-146) EDWI9 3725 420 3305
   11%
Edwardsiella tarda (strain EIB202) EDWTE 3568 15 3553
0%
Edwardsiella tarda (strain FL6-60) EDWTF 3251 5 3246
0%
Eggerthella lenta (strain ATCC 25559 / DSM 2243 / JCM 9979 / NCTC 11813 / VPI 0255) EGGLE 3054 0 3054
0%
Eggerthella sp. (strain YY7918) EEGSY 2674 0 2674
0%
Ehrlichia canis (strain Jake) EHRCJ 921 189 732
   20%
Ehrlichia chaffeensis (strain Arkansas) EHRCR 1100 187 913
   17%
Ehrlichia ruminantium (strain Gardel) EHRRG 948 186 762
   19%
Ehrlichia ruminantium (strain Welgevonden) EHRRW 1122 184 938
   16%
Elusimicrobium minutum (strain Pei191) ELUMP 1528 117 1411
   7%
Enterobacter aerogenes (strain ATCC 13048 / DSM 30053 / JCM 1235 / KCTC 2190 / NBRC 13534 / NCIMB 10102 / NCTC 10006) ENTAK 4909 12 4897
0%
Enterobacter asburiae (strain LF7a) ENTAL 0 0 0
Enterobacter cloacae (strain SCF1) ENTCS 4393 11 4382
0%
Enterobacter cloacae subsp. cloacae (strain ATCC 13047 / DSM 30054 / NBRC 13535 / NCDC 279-56) ENTCC 5411 11 5400
0%
Enterobacter sp. (strain 638) ENT38 4236 713 3523
   16%
Enterococcus faecalis (strain 62) ENTF6 3010 1 3009
0%
Enterococcus faecalis (strain ATCC 47077 / OG1RF) ENTFO 2579 7 2572
0%
Enterococcus faecalis (Streptococcus faecalis) ENTFA 3240 454 2786
   14%
Enterococcus faecium (Streptococcus faecium) ENTFC 0 0 0
Erwinia amylovora (strain ATCC 49946 / CCPPB 0273 / Ea273 / 27-3) ERWAE 3563 4 3559
0%
Erwinia amylovora (strain CFBP1430) ERWAC 3733 4 3729
0%
Erwinia billingiae (strain Eb661) ERWBE 4915 6 4909
0%
Erwinia carotovora subsp. atroseptica (Pectobacterium atrosepticum) ERWCT 4459 782 3677
   17%
Erwinia pyrifoliae (strain DSM 12163 / CIP 106111 / Ep16/96) ERWP6 3938 5 3933
0%
Erwinia pyrifoliae (strain Ep1/96) ERWPE 3619 3 3616
0%
Erwinia sp. (strain Ejp617) ERWSE 3632 1 3631
0%
Erwinia tasmaniensis (strain DSM 17950 / Et1/99) ERWT9 3618 531 3087
   14%
Erysipelothrix rhusiopathiae (strain Fujisawa) ERYRF 1679 1 1678
0%
Erythrobacter litoralis (strain HTCC2594) ERYLH 2999 231 2768
   7%
Escherichia coli (strain 55989 / EAEC) ECO55 4797 762 4035
   15%
Escherichia coli (strain ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1) ECOD1 4124 5 4119
0%
Escherichia coli (strain ATCC 55124 / KO11) ECOKO 4637 1 4636
0%
Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) ECOLC 4173 819 3354
   19%
Escherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / NCIMB 8666 / NRRL B-766 / W) ECOLW 4585 6 4579
0%
Escherichia coli (strain B / BL21-DE3) ECOBD 4842 16 4826
0%
Escherichia coli (strain B / REL606) ECOBR 4142 14 4128
0%
Escherichia coli (strain K12 / DH10B) ECODH 3990 771 3219
   19%
Escherichia coli (strain K12 / MC4100 / BW2952) ECOBW 4042 765 3277
   18%
Escherichia coli (strain K12) ECOLI 4304 4302 2
   99%
Escherichia coli (strain SE11) ECOSE 4979 756 4223
   15%
Escherichia coli (strain SMS-3-5 / SECEC) ECOSM 4876 791 4085
   16%
Escherichia coli (strain UM146) ECOUM 4779 0 4779
0%
Escherichia coli (strain UTI89 / UPEC) ECOUT 5192 824 4368
   15%
Escherichia coli O103:H2 (strain 12009 / EHEC) ECO10 4964 5 4959
0%
Escherichia coli O111:H- (strain 11128 / EHEC) ECO1A 5238 6 5232
0%
Escherichia coli O127:H6 (strain E2348/69 / EPEC) ECO27 4594 765 3829
   16%
Escherichia coli O139:H28 (strain E24377A / ETEC) ECO24 4915 834 4081
   16%
Escherichia coli O150:H5 (strain SE15) ECOS5 4461 5 4456
0%
Escherichia coli O157:H7 ECO57 6500 2009 4491
   30%
Escherichia coli O157:H7 (strain EC4115 / EHEC) ECO5E 5279 748 4531
   14%
Escherichia coli O157:H7 (strain TW14359 / EHEC) ECO5T 5255 12 5243
0%
Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) ECOLU 4975 764 4211
   15%
Escherichia coli O18:K1:H7 (strain IHE3034 / ExPEC) ECOKI 4748 8 4740
0%
Escherichia coli O1:K1 / APEC ECOK1 4870 713 4157
   14%
Escherichia coli O26:H11 (strain 11368 / EHEC) ECO26 5326 5 5321
0%
Escherichia coli O44:H18 (strain 042 / EAEC) ECO44 4884 7 4877
0%
Escherichia coli O45:K1 (strain S88 / ExPEC) ECO45 4805 756 4049
   15%
Escherichia coli O55:H7 (strain CB9615 / EPEC) ECOCB 5085 7 5078
0%
Escherichia coli O6 ECOL6 5335 1674 3661
   31%
Escherichia coli O6:K15:H31 (strain 536 / UPEC) ECOL5 4605 888 3717
   19%
Escherichia coli O78:H11 (strain H10407 / ETEC) ECOH1 4778 7 4771
0%
Escherichia coli O7:K1 (strain IAI39 / ExPEC) ECO7I 4554 753 3801
   16%
Escherichia coli O8 (strain IAI1) ECO8A 4330 761 3569
   17%
Escherichia coli O81 (strain ED1a) ECO81 4940 731 4209
   14%
Escherichia coli O83:H1 (strain NRG 857C / AIEC) ECO8N 4575 1 4574
0%
Escherichia coli O9:H4 (strain HS) ECOHS 4308 841 3467
   19%
Escherichia coli OR:K5:H- (strain ABU 83972) ECOAB 4786 0 4786
0%
Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) ESCF3 4309 693 3616
   16%
Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) ETHHY 2663 0 2663
0%
Eubacterium eligens (strain ATCC 27750 / VPI C15-48) EUBE2 2761 117 2644
   4%
Eubacterium limosum (strain KIST612) EUBLK 4496 0 4496
0%
Eubacterium rectale (strain ATCC 33656 / VPI 0990) EUBR3 3545 121 3424
   3%
Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) EXIS2 3005 290 2715
   9%
Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) EXISA 3020 220 2800
   7%
Ferrimonas balearica (strain DSM 9799 / CCM 4581 / PAT) FERBD 3781 4 3777
0%
Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) FERNB 1725 176 1549
   10%
Fibrobacter succinogenes (strain ATCC 19169 / S85) FIBSS 3796 9 3787
0%
Filifactor alocis (strain ATCC 35896 / D40 B5) FILAD 1615 0 1615
0%
Finegoldia magna (strain ATCC 29328) FINM2 1813 170 1643
   9%
Flavobacteria bacterium (strain BBFL7) FLABB 0 0 0
Flavobacteriaceae bacterium (strain 3519-10) FLAB3 2533 2 2531
0%
Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) FLAJ1 5016 234 4782
   4%
Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) FLAPJ 2408 215 2193
   8%
Flexistipes sinusarabici (strain DSM 4947 / MAS 10) FLESM 2185 0 2185
0%
Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) FLUTR 4016 0 4016
0%
Francisella cf. novicida (strain 3523) FRACN 1854 0 1854
0%
Francisella cf. novicida (strain Fx1) FRACF 1810 0 1810
0%
Francisella philomiragia subsp. philomiragia (strain ATCC 25017) FRAP2 1875 250 1625
   13%
Francisella sp. (strain TX077308) FRAST 1975 1 1974
0%
Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) FRATF 1515 258 1257
   17%
Francisella tularensis subsp. holarctica (strain LVS) FRATH 1678 287 1391
   17%
Francisella tularensis subsp. holarctica (strain OSU18) FRATO 1510 270 1240
   17%
Francisella tularensis subsp. mediasiatica (strain FSC147) FRATM 1388 238 1150
   17%
Francisella tularensis subsp. novicida (strain U112) FRATN 1719 275 1444
   15%
Francisella tularensis subsp. tularensis (strain FSC 198) FRAT1 1528 271 1257
   17%
Francisella tularensis subsp. tularensis (strain NE061598) FRATE 1709 0 1709
0%
Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4) FRATT 1528 294 1234
   19%
Francisella tularensis subsp. tularensis (strain WY96-3418) FRATW 1573 258 1315
   16%
Frankia alni (strain ACN14a) FRAAA 6710 207 6503
   3%
Frankia sp. (strain CcI3) FRASC 4441 261 4180
   5%
Frankia sp. (strain EAN1pec) FRASN 7133 175 6958
   2%
Frankia sp. (strain EuI1c) FRASU 7079 1 7078
0%
Frankia symbiont subsp. Datisca glomerata FRADG 4063 0 4063
0%
Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) FUSNN 2046 344 1702
   16%
Gallibacterium anatis (strain UMN179) GALAU 2476 0 2476
0%
Gallionella capsiferriformans (strain ES-2) GALCS 2853 2 2851
0%
Gardnerella vaginalis (strain 409-05) GARV4 1257 0 1257
0%
Gardnerella vaginalis (strain ATCC 14019 / 317) GARV3 1365 0 1365
0%
Gardnerella vaginalis (strain HMP9231) GARVH 1313 0 1313
0%
Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GEMAT 3932 95 3837
   2%
Geobacillus kaustophilus (strain HTA426) GEOKA 3516 507 3009
   14%
Geobacillus sp. (strain C56-T3) GEOSC 3315 0 3315
0%
Geobacillus sp. (strain WCH70) GEOSW 3048 346