HAMAP proteomes: Bacteria


UniProtKB currently contains 1657 complete bacterial proteomes, including 69 reference proteomes [more...].

To retrieve information from a particular organism (description, genome reference paper(s), taxonomy or a file containing all UniProtKB entries)
or to perform a BLAST search against all potential proteins from this organism, click on the species code.


HAMAP release for UniProt release 2013_05 of 01-May-2013
Statistics
Number of entries

Species Species code UniProtKB UniProtKB/Swiss-Prot UniProtKB/TrEMBL Status in UniProtKB/Swiss-Prot HAMAP coverage







Acaryochloris marina (strain MBIC 11017) ACAM1 8172 322 7850
   3%
   6%
Accumulibacter phosphatis (strain UW-1) ACCPU 4438 1 4437
0%
   13%
Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) ACEAZ 2276 1 2275
0%
   19%
Acetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153) ACEP3 2906 4 2902
0%
   15%
Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) ACEWD 3445 4 3441
0%
   11%
Acholeplasma laidlawii (strain PG-8A) ACHLI 1380 147 1233
   10%
   18%
Achromobacter xylosoxidans (strain A8) ACHXA 6798 2 6796
0%
   8%
Acidovorax citrulli (strain AAC00-1) ACIAC 4602 314 4288
   6%
   11%
Acinetobacter sp. (strain ADP1) ACIAD 3293 480 2813
   14%
   16%
Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) ACIAP 4718 1 4717
0%
   11%
Acinetobacter baumannii (strain 1656-2) ACIB1 3744 0 3744
0%
   14%
Acinetobacter baumannii (strain AB307-0294) ACIB3 3452 293 3159
   8%
   15%
Acinetobacter baumannii (strain AB0057) ACIB5 3732 288 3444
   7%
   14%
Acinetobacter baumannii (strain ACICU) ACIBC 3745 293 3452
   7%
   14%
Acinetobacter baumannii (strain TCDC-AB0715) ACIBD 3819 0 3819
0%
   13%
Acinetobacter baumannii (strain SDF) ACIBS 2767 303 2464
   10%
   18%
Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) ACIBT 3798 306 3492
   8%
   13%
Acinetobacter baumannii (strain AYE) ACIBY 3652 309 3343
   8%
   14%
Acidothermus cellulolyticus (strain ATCC 43068 / 11B) ACIC1 2157 210 1947
   9%
   19%
Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) ACIC5 3363 143 3220
   4%
   12%
Acidiphilium cryptum (strain JF-5) ACICJ 3521 262 3259
   7%
   13%
Acinetobacter calcoaceticus (strain PHEA-2) ACICP 3598 4 3594
0%
   14%
Acidithiobacillus caldus (strain SM-1) ACICS 3062 0 3062
0%
   15%
Acidovorax ebreus (strain TPSY) ACIET 3461 249 3212
   7%
   14%
Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) ACIF2 3120 209 2911
   6%
   16%
Acidithiobacillus ferrooxidans (strain ATCC 53993) ACIF5 2747 207 2540
   7%
   18%
Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) ACIFD 1935 8 1927
0%
   16%
Acidaminococcus fermentans (strain ATCC 25085 / DSM 20731 / VR4) ACIFV 2016 12 2004
0%
   19%
Acidaminococcus intestini (strain RyC-MR95) ACIIR 2386 0 2386
0%
   15%
Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) ACIMA 3856 0 3856
0%
   12%
Acinetobacter sp. (strain JCM 1667 / KCTC 23045 / DR1) ACISD 3873 1 3872
0%
   13%
Acidovorax sp. (strain JS42) ACISJ 4045 305 3740
   7%
   13%
Acidobacterium sp. (strain MP5ACTX9) ACISM 4514 0 4514
0%
   9%
Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) ACTM4 8113 2 8111
0%
   6%
Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) ACTMD 6912 9 6903
0%
   7%
Actinobacillus pleuropneumoniae serotype 5b (strain L20) ACTP2 2004 425 1579
   21%
   28%
Actinobacillus pleuropneumoniae serotype 7 (strain AP76) ACTP7 2113 381 1732
   18%
   27%
Actinobacillus pleuropneumoniae serotype 3 (strain JL03) ACTPJ 2026 380 1646
   18%
   28%
Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) ACTS5 8240 3 8237
0%
   6%
Actinobacillus succinogenes (strain ATCC 55618 / 130Z) ACTSZ 2077 402 1675
   19%
   27%
Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) AEQSU 3128 0 3128
0%
   10%
Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) AERHH 4121 464 3657
   11%
   17%
Aeromonas salmonicida (strain A449) AERS4 4327 451 3876
   10%
   16%
Aerococcus urinae (strain ACS-120-V-Col10a) AERUA 1684 1 1683
0%
   19%
Aeromonas veronii (strain B565) AERVB 4009 1 4008
0%
   16%
Aggregatibacter actinomycetemcomitans serotype C (strain D11S-1) AGGAD 2276 1 2275
0%
   22%
Aggregatibacter aphrophilus (strain NJ8700) AGGAN 2223 8 2215
0%
   25%
Agrobacterium radiobacter (strain K84 / ATCC BAA-868) AGRRK 6675 280 6395
   4%
   8%
Agrobacterium sp. (strain H13-3) AGRSH 5329 0 5329
0%
   10%
Agrobacterium tumefaciens (strain C58 / ATCC 33970) AGRT5 5344 632 4712
   11%
   10%
Agrobacterium vitis (strain S4 / ATCC BAA-846) AGRVS 5353 282 5071
   5%
   10%
Akkermansia muciniphila (strain ATCC BAA-835) AKKM8 2137 133 2004
   6%
   16%
Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) ALCBS 2752 378 2374
   13%
   19%
Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5) ALCDB 4381 0 4381
0%
   12%
Alkalilimnicola ehrlichei (strain MLHE-1) ALHEH 2862 369 2493
   12%
   19%
Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) ALIAD 3059 5 3054
0%
   15%
Alicyclobacillus acidocaldarius (strain Tc-4-1) ALIAT 3170 0 3170
0%
   14%
Alicycliphilus denitrificans (strain JCM 14587 / BC) ALIDB 4484 0 4484
0%
   11%
Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) ALIDK 4620 1 4619
0%
   11%
Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG 46020 / CIP 107999) ALIFI 3054 0 3054
0%
   10%
Aliivibrio salmonicida (strain LFI1238) ALISL 3513 425 3088
   12%
   18%
Alkaliphilus metalliredigens (strain QYMF) ALKMQ 4467 307 4160
   6%
   11%
Alkaliphilus oremlandii (strain OhILAs) ALKOO 2828 267 2561
   9%
   14%
Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) ALLVD 3211 43 3168
   1%
   17%
Alteromonas macleodii (strain Balearic Sea AD45) ALTMB 3948 0 3948
0%
   14%
Alteromonas macleodii (strain DSM 17117 / Deep ecotype) ALTMD 3729 221 3508
   5%
   13%
Alteromonas macleodii (strain English Channel 673) ALTME 3875 0 3875
0%
   15%
Alteromonas macleodii (strain Black Sea 11) ALTMS 3750 0 3750
0%
   15%
Alteromonas sp. (strain SN2) ALTSS 4342 4 4338
0%
   13%
Aminobacterium colombiense (strain DSM 12261 / ALA-1) AMICL 1872 1 1871
0%
   18%
Ammonifex degensii (strain DSM 10501 / KC4) AMMDK 2077 0 2077
0%
   19%
Amoebophilus asiaticus (strain 5a2) AMOA5 1253 113 1140
   9%
   16%
Amycolatopsis mediterranei (strain U-32) AMYMU 9204 3 9201
0%
   5%
Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1) AMYSD 4703 0 4703
0%
   9%
Anabaena cylindrica (strain ATCC 27899 / PCC 7122) ANACC 5796 0 5796
0%
   9%
Anaplasma centrale (strain Israel) ANACI 919 0 919
0%
   28%
Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) ANAD2 4460 233 4227
   5%
   11%
Anaeromyxobacter dehalogenans (strain 2CP-C) ANADE 4345 311 4034
   7%
   11%
Anaeromyxobacter sp. (strain Fw109-5) ANADF 4461 251 4210
   5%
   11%
Anaerobaculum mobile (strain ATCC BAA-54 / DSM 13181 / NGA) ANAMD 1999 0 1999
0%
   18%
Anaplasma marginale (strain Florida) ANAMF 939 110 829
   11%
   27%
Anaplasma marginale (strain St. Maries) ANAMM 945 192 753
   20%
   27%
Anaerococcus prevotii (strain ATCC 9321 / DSM 20548 / JCM 6508 / PC1) ANAPD 1795 1 1794
0%
   17%
Anaplasma phagocytophilum (strain HZ) ANAPZ 1330 160 1170
   12%
   18%
Anaeromyxobacter sp. (strain K) ANASK 4444 245 4199
   5%
   11%
Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) ANATU 3110 2 3108
0%
   11%
Anabaena variabilis (strain ATCC 29413 / PCC 7937) ANAVT 5634 462 5172
   8%
   10%
Anoxybacillus flavithermus (strain DSM 21510 / WK1) ANOFW 2819 228 2591
   8%
   19%
Aquifex aeolicus (strain VF5) AQUAE 1553 782 771
   50%
   28%
Arcobacter butzleri (strain RM4018) ARCB4 2254 226 2028
   10%
   16%
Arcanobacterium haemolyticum (strain ATCC 9345 / DSM 20595 / NBRC 15585 / NCTC 8452 / 11018) ARCHD 1717 2 1715
0%
   17%
Arcobacter nitrofigilis (strain ATCC 33309 / DSM 7299 / LMG 7604 / NCTC 12251 / CI) ARCNC 3125 2 3123
0%
   12%
Aromatoleum aromaticum (strain EbN1) AROAE 4483 413 4070
   9%
   12%
Arthrobacter arilaitensis (strain DSM 16368 / CIP 108037 / JCM 13566 / Re117) ARTAR 3380 0 3380
0%
   11%
Arthrobacter aurescens (strain TC1) ARTAT 4565 209 4356
   4%
   9%
Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) ARTCA 4587 176 4411
   3%
   9%
Arthrobacter phenanthrenivorans (strain DSM 18606 / JCM 16027 / LMG 23796 / Sphe3) ARTPP 4081 0 4081
0%
   10%
Arthrobacter sp. (strain FB24) ARTS2 4453 222 4231
   4%
   9%
Arthromitus sp. (strain SFB-mouse-Japan) ARTSS 1487 0 1487
0%
   19%
Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 / CB 48) ASTEC 3743 0 3743
0%
   11%
Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) ATOPD 1353 2 1351
0%
   21%
Aster yellows witches'-broom phytoplasma (strain AYWB) AYWBP 690 126 564
   18%
   22%
Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) AZOC5 4708 301 4407
   6%
   11%
Azospirillum lipoferum (strain 4B) AZOL4 6062 1 6061
0%
   9%
Azobacteroides pseudotrichonymphae genomovar. CFP2 AZOPC 847 138 709
   16%
   31%
Azospirillum sp. (strain B510) AZOS1 6092 2 6090
0%
   9%
Azoarcus sp. (strain BH72) AZOSB 3981 371 3610
   9%
   14%
Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) AZOSU 3432 0 3432
0%
   16%
Azotobacter vinelandii (strain DJ / ATCC BAA-1303) AZOVD 4990 363 4627
   7%
   13%
Bacillus atrophaeus (strain 1942) BACA1 4186 1 4185
0%
   15%
Bacillus amyloliquefaciens (strain FZB42) BACA2 3693 492 3201
   13%
   16%
Bacillus anthracis (strain A0248) BACAA 5291 405 4886
   7%
   12%
Bacillus anthracis (strain CDC 684 / NRRL 3495) BACAC 5895 410 5485
   6%
   10%
Bacillus thuringiensis (strain Al Hakam) BACAH 4792 393 4399
   8%
   13%
Bacillus cereus var. anthracis (strain CI) BACAI 5522 0 5522
0%
   11%
Bacillus anthracis BACAN 6614 734 5880
   11%
   10%
Bacillus amyloliquefaciens (strain ATCC 23350 / DSM 7 / BCRC 11601 / NBRC 15535 / NRRL B-14393) BACAS 3901 1 3900
0%
   15%
Bacillus cereus (strain AH820) BACC0 5798 402 5396
   6%
   11%
Bacillus cereus (strain ATCC 10987) BACC1 5821 590 5231
   10%
   11%
Bacillus cereus (strain G9842) BACC2 5844 409 5435
   6%
   11%
Bacillus cereus (strain 03BB102) BACC3 5598 410 5188
   7%
   11%
Bacillus cereus (strain B4264) BACC4 5384 413 4971
   7%
   11%
Bacillus coagulans (strain 2-6) BACC6 2940 0 2940
0%
   17%
Bacillus cereus (strain AH187) BACC7 5747 412 5335
   7%
   11%
Bacillus cellulosilyticus (strain ATCC 21833 / DSM 2522 / FERM P-1141 / JCM 9156 / N-4) BACCJ 4253 2 4251
0%
   13%
Bacillus cereus subsp. cytotoxis (strain NVH 391-98) BACCN 3840 434 3406
   11%
   15%
Bacillus cereus (strain Q1) BACCQ 5459 381 5078
   6%
   11%
Bacillus cereus (strain ATCC 14579 / DSM 31) BACCR 5240 652 4588
   12%
   12%
Bacillus cereus (strain ZK / E33L) BACCZ 5638 561 5077
   9%
   11%
Bacteroides fragilis (strain 638R) BACF6 4284 5 4279
0%
   8%
Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) BACFN 4234 312 3922
   7%
   9%
Bacteroides fragilis (strain YCH46) BACFR 4597 334 4263
   7%
   8%
Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) BACHD 4006 736 3270
   18%
   15%
Bacillus thuringiensis subsp. konkukian (strain 97-27) BACHK 5169 567 4602
   10%
   12%
Bacillus selenitireducens (strain ATCC 700615 / DSM 15326 / MLS10) BACIE 3231 2 3229
0%
   16%
Bacillus licheniformis (strain DSM 13 / ATCC 14580) BACLD 4621 562 4059
   12%
   14%
Bacillus megaterium (strain DSM 319) BACMD 5100 16 5084
0%
   13%
Bacillus megaterium (strain ATCC 12872 / QMB1551) BACMQ 5606 16 5590
0%
   11%
Bacteriovorax marinus (strain ATCC BAA-682 / DSM 15412 / SJ) BACMS 3230 1 3229
0%
   9%
Bacillus pumilus (strain SAFR-032) BACP2 3675 425 3250
   11%
   15%
Bacillus pseudofirmus (strain OF4) BACPE 4310 53 4257
   1%
   13%
Bacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 / W23) BACPZ 4053 25 4028
0%
   15%
Bacteroides salanitronis (strain DSM 18170 / JCM 13567 / BL78) BACSH 3608 0 3608
0%
   9%
Bacillus clausii (strain KSM-K16) BACSK 4082 496 3586
   12%
   14%
Bacillus subtilis (strain BSn5) BACST 4145 1 4144
0%
   15%
Bacillus subtilis (strain 168) BACSU 4199 4188 11
   99%
   16%
Bacillus thuringiensis subsp. finitimus (strain YBT-020) BACT0 5739 0 5739
0%
   11%
Bacillus thuringiensis (strain BMB171) BACT1 5324 0 5324
0%
   11%
Bacillus tusciae (strain DSM 2912 / NBRC 15312 / T2) BACT2 3135 3 3132
0%
   15%
Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108) BACT6 3240 2 3238
0%
   11%
Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) BACTN 4782 357 4425
   7%
   8%
Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) BACV8 3982 259 3723
   6%
   9%
Bacillus weihenstephanensis (strain KBAB4) BACWK 5650 434 5216
   7%
   11%
Bartonella bacilliformis (strain ATCC 35685 / KC583) BARBK 1255 258 997
   20%
   28%
Bartonella clarridgeiae (strain CIP 104772 / 73) BARC7 1307 0 1307
0%
   27%
Bartonella grahamii (strain as4aup) BARGA 1709 3 1706
0%
   21%
Bartonella henselae (strain ATCC 49882 / Houston 1) BARHE 1466 324 1142
   22%
   24%
Bartonella quintana (strain Toulouse) BARQU 1139 312 827
   27%
   30%
Bartonella tribocorum (strain CIP 105476 / IBS 506) BART1 1962 259 1703
   13%
   18%
Baumannia cicadellinicola subsp. Homalodisca coagulata BAUCH 595 266 329
   44%
   57%
Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) BDEBA 3583 277 3306
   7%
   10%
Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) BEII9 3774 226 3548
   5%
   13%
Belliella baltica (strain DSM 15883 / CIP 108006 / LMG 21964 / BA134) BELBD 3607 0 3607
0%
   10%
Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) BEUC1 4195 132 4063
   3%
   9%
Bifidobacterium animalis subsp. lactis (strain AD011) BIFA0 1525 143 1382
   9%
   20%
Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) BIFAA 1629 186 1443
   11%
   19%
Bifidobacterium animalis subsp. lactis (strain BB-12) BIFAB 1640 1 1639
0%
   18%
Bifidobacterium asteroides (strain PRL2011) BIFAP 1654 0 1654
0%
   18%
Bifidobacterium animalis subsp. animalis (strain ATCC 25527 / DSM 20104 / JCM 1190 / R101-8) BIFAR 1534 0 1534
0%
   20%
Bifidobacterium animalis subsp. lactis (strain DSM 10140 / JCM 10602 / LMG 18314) BIFAS 1565 5 1560
0%
   20%
Bifidobacterium animalis subsp. lactis (strain V9) BIFAV 1569 0 1569
0%
   20%
Bifidobacterium breve (strain ACS-071-V-Sch8b) BIFBA 1821 1 1820
0%
   18%
Bifidobacterium bifidum (strain PRL2010) BIFBP 1707 0 1707
0%
   18%
Bifidobacterium bifidum (strain S17) BIFBS 1783 0 1783
0%
   18%
Bifidobacterium breve (strain NCIMB 8807 / UCC2003) BIFBU 1826 1 1825
0%
   18%
Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) BIFDB 2121 3 2118
0%
   14%
Bifidobacterium longum subsp. infantis (strain 157F) BIFL1 1975 0 1975
0%
   16%
Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 / JCM 1217 / NCTC 11818 / E194b) BIFL2 1907 2 1905
0%
   17%
Bifidobacterium animalis subsp. lactis (strain Bl-04 / DGCC2908 / RB 4825 / SD5219) BIFLB 1566 4 1562
0%
   20%
Bifidobacterium longum (strain DJO10A) BIFLD 1980 192 1788
   9%
   16%
Bifidobacterium longum subsp. longum (strain JDM301) BIFLJ 1944 0 1944
0%
   16%
Bifidobacterium longum subsp. longum (strain BBMN68) BIFLM 1795 0 1795
0%
   18%
Bifidobacterium longum (strain NCC 2705) BIFLO 1725 302 1423
   17%
   19%
Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) BIFLS 3196 188 3008
   5%
   11%
Blattabacterium sp. subsp. Blattella germanica (strain Bge) BLASB 590 0 590
0%
   36%
Blastococcus saxobsidens (strain DD2) BLASD 4793 0 4793
0%
   9%
Blattabacterium sp. subsp. Periplaneta americana (strain BPLAN) BLASP 581 1 580
0%
   39%
Blochmannia floridanus BLOFL 583 284 299
   48%
   54%
Blochmannia pennsylvanicus (strain BPEN) BLOPB 610 274 336
   44%
   53%
Blochmannia vafer (strain BVAF) BLOVB 587 0 587
0%
   50%
Bordetella avium (strain 197N) BORA1 3372 363 3009
   10%
   16%
Borrelia afzelii (strain PKo) BORAP 1695 191 1504
   11%
   13%
Borrelia bissettii (strain DN127) BORBD 1403 1 1402
0%
   15%
Borrelia burgdorferi (strain JD1) BORBJ 1358 1 1357
0%
   16%
Bordetella bronchiseptica (strain MO149) BORBM 4601 0 4601
0%
   12%
Borrelia burgdorferi (strain N40) BORBN 1233 6 1227
0%
   18%
Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) BORBR 4961 522 4439
   10%
   11%
Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) BORBU 1289 394 895
   30%
   18%
Borrelia burgdorferi (strain ZS7) BORBZ 1223 160 1063
   13%
   18%
Borrelia crocidurae (strain Achema) BORCA 1467 0 1467
0%
   13%
Borrelia duttonii (strain Ly) BORDL 1287 120 1167
   9%
   16%
Borrelia garinii (strain PBi) BORGA 1262 203 1059
   16%
   17%
Borrelia hermsii (strain DAH) BORHD 819 126 693
   15%
   26%
Bordetella pertussis (strain ATCC 9797 / DSM 5571 / NCTC 10739 / 18323) BORP1 3159 5 3154
0%
   16%
Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) BORPA 4161 508 3653
   12%
   13%
Bordetella parapertussis (strain Bpp5) BORPB 4143 0 4143
0%
   12%
Bordetella pertussis (strain CS) BORPC 3274 2 3272
0%
   16%
Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) BORPD 4912 307 4605
   6%
   11%
Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) BORPE 3261 515 2746
   15%
   16%
Borrelia recurrentis (strain A1) BORRA 977 116 861
   11%
   21%
Borrelia turicatae (strain 91E135) BORT9 818 115 703
   14%
   26%
Brachybacterium faecium (strain ATCC 43885 / DSM 4810 / NCIB 9860) BRAFD 3062 6 3056
0%
   12%
Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) BRAHW 2642 111 2531
   4%
   12%
Brachyspira intermedia (strain ATCC 51140 / PWS/A) BRAIP 2872 0 2872
0%
   11%
Bradyrhizobium japonicum (strain USDA 110) BRAJA 8253 656 7597
   7%
   7%
Brachyspira murdochii (strain ATCC 51284 / DSM 12563 / 56-150) BRAM5 2751 0 2751
0%
   12%
Brachyspira pilosicoli (strain ATCC BAA-1826 / 95/1000) BRAP9 2301 0 2301
0%
   13%
Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) BRASB 7567 339 7228
   4%
   8%
Bradyrhizobium sp. (strain ORS278) BRASO 6701 324 6377
   4%
   8%
Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) BREBN 5887 251 5636
   4%
   9%
Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) BRESC 3326 0 3326
0%
   13%
Brucella abortus (strain S19) BRUA1 2993 320 2673
   10%
   16%
Brucella abortus (strain 2308) BRUA2 3022 474 2548
   15%
   16%
Brucella abortus biovar 1 (strain 9-941) BRUAB 3077 499 2578
   16%
   16%
Brucella canis (strain ATCC 23365 / NCTC 10854) BRUC2 3238 364 2874
   11%
   15%
Brucella melitensis (strain M5-90) BRUM5 3347 0 3347
0%
   14%
Brucella melitensis biotype 2 (strain ATCC 23457) BRUMB 3125 317 2808
   10%
   15%
Brucella microti (strain CCM 4915) BRUMC 3270 0 3270
0%
   15%
Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) BRUME 3178 572 2606
   17%
   30%
Brucella melitensis (strain M28) BRUMM 3351 0 3351
0%
   14%
Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) BRUO2 2820 336 2484
   11%
   17%
Brucella pinnipedialis (strain NCTC 12890 / BCCN 94-73 / B2/94) BRUPB 3271 0 3271
0%
   17%
Brucella suis (strain ATCC 23445 / NCTC 10510) BRUSI 3214 361 2853
   11%
   15%
Brucella suis biovar 1 (strain 1330) BRUSU 3277 576 2701
   17%
   15%
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain LL01) BUCA0 577 0 577
0%
   57%
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain TLW03) BUCA3 573 0 573
0%
   56%
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) BUCA5 555 249 306
   44%
   63%
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain JF99) BUCAF 590 0 590
0%
   57%
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) BUCAI 572 572 0
Complete
   65%
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain JF98) BUCAJ 477 0 477
0%
   54%
Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) BUCAP 562 562 0
Complete
   65%
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) BUCAT 553 247 306
   44%
   63%
Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) BUCBP 507 507 0
Complete
   65%
Buchnera aphidicola subsp. Cinara cedri (strain Cc) BUCCC 362 148 214
   40%
   55%
Burkholderia ambifaria (strain MC40-6) BURA4 6690 354 6336
   5%
   9%
Burkholderia cenocepacia (strain AU 1054) BURCA 6450 419 6031
   6%
   10%
Burkholderia cenocepacia (strain MC0-3) BURCC 6986 359 6627
   5%
   9%
Burkholderia cenocepacia (strain HI2424) BURCH 6898 402 6496
   5%
   9%
Burkholderia cepacia (strain J2315 / LMG 16656) BURCJ 6993 336 6657
   4%
   9%
Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) BURCM 6600 391 6209
   5%
   9%
Burkholderia glumae (strain BGR1) BURGB 5660 0 5660
0%
   11%
Burkholderia gladioli (strain BSR3) BURGS 7351 0 7351
0%
   8%
Burkholderia multivorans (strain ATCC 17616 / 249) BURM1 7212 332 6880
   4%
   9%
Burkholderia mallei (strain NCTC 10247) BURM7 5182 356 4826
   6%
   11%
Burkholderia mallei (strain NCTC 10229) BURM9 4943 353 4590
   7%
   11%
Burkholderia mallei (strain ATCC 23344) BURMA 4797 462 4335
   9%
   12%
Burkholderia mallei (strain SAVP1) BURMS 4981 346 4635
   6%
   12%
Burkholderia pseudomallei (strain 1106a) BURP0 7145 374 6771
   5%
   8%
Burkholderia pseudomallei (strain 1710b) BURP1 6329 416 5913
   6%
   9%
Burkholderia pseudomallei (strain 668) BURP6 7102 362 6740
   5%
   9%
Burkholderia phymatum (strain DSM 17167 / STM815) BURP8 7461 333 7128
   4%
   9%
Burkholderia phytofirmans (strain DSM 17436 / PsJN) BURPP 7197 338 6859
   4%
   9%
Burkholderia pseudomallei (strain K96243) BURPS 5717 495 5222
   8%
   11%
Burkholderia rhizoxinica (strain DSM 19002 / CIP 109453 / HKI 454) BURRH 3859 0 3859
0%
   13%
Burkholderia sp. (strain 383) BURS3 7715 474 7241
   6%
   8%
Burkholderia sp. (strain CCGE1002) BURSC 6866 1 6865
0%
   9%
Burkholderia sp. (strain CCGE1003) BURSG 5983 0 5983
0%
   10%
Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) BURTA 5561 416 5145
   7%
   11%
Burkholderia vietnamiensis (strain G4 / LMG 22486) BURVG 7409 377 7032
   5%
   8%
Burkholderia xenovorans (strain LB400) BURXL 8591 438 8153
   5%
   8%
Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316) BUTPB 3799 0 3799
0%
   10%
Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) CALAS 4097 0 4097
0%
   10%
Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) CALBD 2652 210 2442
   7%
   15%
Caldisericum exile (strain DSM 21853 / NBRC 104410 / AZM16c01) CALEA 1566 0 1566
0%
   18%
Caldicellulosiruptor hydrothermalis (strain DSM 18901 / VKM B-2411 / 108) CALH1 2521 0 2521
0%
   16%
Caldicellulosiruptor kronotskyensis (strain DSM 18902 / VKM B-2412 / 2002) CALK2 2461 0 2461
0%
   16%
Caldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 / I77R1B) CALKI 2463 0 2463
0%
   16%
Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) CALNY 2089 3 2086
0%
   20%
Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47) CALOO 2184 0 2184
0%
   18%
Caldicellulosiruptor owensensis (strain ATCC 700167 / DSM 13100 / OL) CALOW 2133 0 2133
0%
   19%
Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) CALS8 2629 251 2378
   9%
   16%
Campylobacter concisus (strain 13826) CAMC1 2063 229 1834
   11%
   17%
Campylobacter curvus (strain 525.92) CAMC5 1928 215 1713
   11%
   17%
Campylobacter fetus subsp. fetus (strain 82-40) CAMFF 1715 235 1480
   13%
   20%
Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) CAMHC 1687 230 1457
   13%
   20%
Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) CAMJ8 1622 308 1314
   18%
   23%
Campylobacter jejuni subsp. jejuni serotype HS:41 (strain ICDCCJ07001) CAMJC 1531 0 1531
0%
   20%
Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) CAMJD 1712 283 1429
   16%
   21%
Campylobacter jejuni subsp. jejuni serotype O:2 (strain NCTC 11168) CAMJE 1623 443 1180
   27%
   24%
Campylobacter jejuni subsp. jejuni (strain IA3902) CAMJI 1665 0 1665
0%
   23%
Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) CAMJJ 1748 314 1434
   17%
   21%
Campylobacter jejuni subsp. jejuni serotype HS21 (strain M1 / 99/308) CAMJM 1618 0 1618
0%
   23%
Campylobacter jejuni (strain RM1221) CAMJR 1836 333 1503
   18%
   20%
Campylobacter jejuni subsp. jejuni (strain S3) CAMJS 1783 0 1783
0%
   21%
Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) CAMLR 1545 191 1354
   12%
   21%
Capnocytophaga canimorsus (strain 5) CAPCC 2394 1 2393
0%
   12%
Capnocytophaga ochracea (strain ATCC 27872 / DSM 7271 / JCM 12966 / VPI 2845) CAPOD 2171 0 2171
0%
   14%
Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) CARHZ 2615 350 2265
   13%
   17%
Carsonella ruddii (strain PV) CARRP 182 29 153
   15%
   17%
Carnobacterium sp. (strain 17-4) CARS1 2474 0 2474
0%
   17%
Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) CATAD 8909 12 8897
0%
   5%
Caulobacter crescentus (strain NA1000 / CB15N) CAUCN 3852 323 3529
   8%
   12%
Caulobacter crescentus (strain ATCC 19089 / CB15) CAUCR 3720 564 3156
   15%
   13%
Caulobacter sp. (strain K31) CAUSK 5373 277 5096
   5%
   9%
Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) CAUST 4136 4 4132
0%
   11%
Cellulophaga algicola (strain DSM 14237 / IC166 / ACAM 630) CELAD 4114 1 4113
0%
   8%
Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) CELFA 3760 3 3757
0%
   11%
Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) CELFN 3673 3 3670
0%
   11%
Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078) CELGA 3153 0 3153
0%
   13%
Cellvibrio japonicus (strain Ueda107) CELJU 3711 259 3452
   6%
   14%
Cellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20) CELLC 3281 0 3281
0%
   10%
Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) CELLD 4150 0 4150
0%
   10%
Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) CHIPD 7179 2 7177
0%
   5%
Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) CHLAA 3850 235 3615
   6%
   11%
Chlamydophila abortus (strain S26/3) CHLAB 932 235 697
   25%
   28%
Chloroflexus aggregans (strain MD-66 / DSM 9485) CHLAD 3725 185 3540
   4%
   11%
Chlorobium chlorochromatii (strain CaD3) CHLCH 1986 295 1691
   14%
   20%
Chlamydophila caviae (strain GPIC) CHLCV 1005 268 737
   26%
   26%
Chlamydophila felis (strain Fe/C-56) CHLFF 1013 225 788
   22%
   26%
Chlorobium limicola (strain DSM 245 / NBRC 103803) CHLL2 2419 238 2181
   9%
   17%
Chlamydia muridarum (strain MoPn / Nigg) CHLMU 915 412 503
   45%
   30%
Chlamydophila psittaci (strain RD1) CHLP1 951 0 951
0%
   27%
Chlamydophila psittaci (strain ATCC VR-125 / 6BC) CHLP6 1217 8 1209
0%
   24%
Chlorobaculum parvum (strain NCIB 8327) CHLP8 2044 263 1781
   12%
   20%
Chlorobium phaeobacteroides (strain BS1) CHLPB 2434 222 2212
   9%
   17%
Chlorobium phaeobacteroides (strain DSM 266) CHLPD 2579 276 2303
   10%
   16%
Chlamydophila pecorum (strain ATCC VR-628 / E58) CHLPE 988 0 988
0%
   25%
Chlamydia pneumoniae CHLPN 1569 428 1141
   27%
   18%
Chlamydophila pneumoniae (strain LPCoLN) CHLPP 1105 0 1105
0%
   24%
Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) CHLSY 4153 181 3972
   4%
   10%
Chlamydia trachomatis serovar G (strain G/11222) CHLT0 927 0 927
0%
   28%
Chlamydia trachomatis serovar E (strain E/11023) CHLT1 926 0 926
0%
   28%
Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) CHLT2 884 234 650
   26%
   30%
Chloroherpeton thalassium (strain ATCC 35110 / GB-78) CHLT3 2708 207 2501
   7%
   15%
Chlamydia trachomatis serovar A (strain A2497) CHLT4 1246 0 1246
0%
   27%
Chlamydia trachomatis serovar E (strain E/150) CHLT5 927 0 927
0%
   28%
Chlamydia trachomatis serovar G (strain G/9768) CHLT7 920 0 920
0%
   29%
Chlamydia trachomatis serovar G (strain G/9301) CHLT9 921 1 920
0%
   28%
Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B) CHLTA 917 239 678
   26%
   29%
Chlamydia trachomatis serovar L2b (strain UCH-1/proctitis) CHLTB 883 211 672
   23%
   30%
Chlamydia trachomatis (strain L2c) CHLTC 954 0 954
0%
   26%
Chlamydia trachomatis serovar D (strain D-EC) CHLTD 878 0 878
0%
   30%
Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) CHLTE 2250 420 1830
   18%
   18%
Chloracidobacterium thermophilum (strain B) CHLTF 3053 0 3053
0%
   12%
Chlamydia trachomatis serovar G (strain G/11074) CHLTG 919 0 919
0%
   29%
Chlamydia trachomatis serovar B (strain Jali20/OT) CHLTJ 883 4 879
0%
   30%
Chlamydia trachomatis serovar D (strain D-LC) CHLTL 878 0 878
0%
   30%
Chlamydia trachomatis (strain D/UW-3/Cx) CHLTR 895 414 481
   46%
   30%
Chlamydia trachomatis serovar E (strain Sweden2) CHLTS 882 2 880
0%
   30%
Chlamydia trachomatis serovar B (strain TZ1A828/OT) CHLTZ 888 2 886
0%
   29%
Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) CHRSD 3298 406 2892
   12%
   17%
Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) CHRVO 4397 515 3882
   11%
   13%
Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) CITK8 5019 678 4341
   13%
   18%
Citrobacter rodentium (strain ICC168) CITRI 4792 17 4775
0%
   19%
Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) CLAM3 3078 193 2885
   6%
   12%
Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) CLAMS 3058 171 2887
   5%
   11%
Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) CLOA9 2837 0 2837
0%
   15%
Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) CLOAB 3847 557 3290
   14%
   12%
Clostridium acetobutylicum (strain EA 2018) CLOAE 3912 0 3912
0%
   12%
Cloacamonas acidaminovorans (strain Evry) CLOAI 1813 1 1812
0%
   15%
Clostridium botulinum (strain H04402 065 / Type A5) CLOB0 3688 0 3688
0%
   11%
Clostridium botulinum (strain ATCC 19397 / Type A) CLOB1 3546 310 3236
   8%
   12%
Clostridium botulinum (strain 230613 / Type F) CLOB2 3525 0 3525
0%
   11%
Clostridiales genomosp. BVAB3 (strain UPII9-5) CLOB3 1566 0 1566
0%
   17%
Clostridium botulinum (strain 657 / Type Ba4) CLOB6 3977 254 3723
   6%
   11%
Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) CLOB8 5003 321 4682
   6%
   10%
Clostridium botulinum (strain Alaska E43 / Type E3) CLOBA 3254 290 2964
   8%
   13%
Clostridium botulinum (strain Eklund 17B / Type B) CLOBB 3473 284 3189
   8%
   12%
Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) CLOBH 4237 290 3947
   6%
   11%
Clostridium botulinum (strain Kyoto / Type A2) CLOBJ 3860 258 3602
   6%
   11%
Clostridium botulinum (strain Okra / Type B1) CLOBK 3844 287 3557
   7%
   11%
Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) CLOBL 3653 311 3342
   8%
   12%
Clostridium botulinum (strain Loch Maree / Type A3) CLOBM 3981 285 3696
   7%
   11%
Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) CLOC7 4211 4 4207
0%
   11%
Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) CLOCD 3774 0 3774
0%
   11%
Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) CLOCE 3287 208 3079
   6%
   13%
Clostridium difficile (strain 630) CLOD6 3784 294 3490
   7%
   11%
Clostridium difficile (strain CD196) CLODC 3453 3 3450
0%
   12%
Clostridium difficile (strain R20291) CLODR 3505 4 3501
0%
   12%
Clostridium kluyveri (strain NBRC 12016) CLOK1 3496 213 3283
   6%
   13%
Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) CLOK5 3828 284 3544
   7%
   12%
Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC) CLOLD 4149 0 4149
0%
   11%
Clostridium novyi (strain NT) CLONN 2305 308 1997
   13%
   18%
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) CLOP1 2873 358 2515
   12%
   15%
Clostridium perfringens (strain 13 / Type A) CLOPE 2721 468 2253
   17%
   16%
Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) CLOPH 3891 261 3630
   6%
   11%
Clostridium perfringens (strain SM101 / Type A) CLOPS 2558 339 2219
   13%
   16%
Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) CLOSD 2572 20 2552
0%
   16%
Clostridium sp. (strain SY8519) CLOSS 2601 1 2600
0%
   15%
Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) CLOSW 4133 2 4131
0%
   11%
Clostridium tetani (strain Massachusetts / E88) CLOTE 2415 333 2082
   13%
   15%
Clostridium thermocellum (strain ATCC 27405 / DSM 1237) CLOTH 3105 297 2808
   9%
   14%
Clostridium thermocellum (strain DSM 1313 / LMG 6656 / LQ8) CLOTL 2881 0 2881
0%
   15%
Collimonas fungivorans (strain Ter331) COLFT 4429 0 4429
0%
   12%
Colwellia psychrerythraea (strain 34H / ATCC BAA-681) COLP3 4872 440 4432
   9%
   12%
Comamonas testosteroni (strain CNB-2) COMT2 4781 0 4781
0%
   11%
Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) CONWI 5912 4 5908
0%
   7%
Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) COPPD 1481 102 1379
   6%
   17%
Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) CORA7 2528 160 2368
   6%
   15%
Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) CORAD 3110 0 3110
0%
   12%
Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) CORCM 8019 0 8019
0%
   6%
Corynebacterium diphtheriae (strain 241) CORD2 2232 0 2232
0%
   17%
Corynebacterium diphtheriae (strain 31A) CORD3 2352 0 2352
0%
   16%
Corynebacterium diphtheriae (strain ATCC 27012 / C7 (beta)) CORD7 2327 0 2327
0%
   16%
Corynebacterium diphtheriae (strain BH8) CORDB 2340 0 2340
0%
   16%
Corynebacterium diphtheriae (strain CDCE 8392) CORDD 2244 0 2244
0%
   17%
Corynebacterium diphtheriae (strain HC01) CORDH 2230 0 2230
0%
   17%
Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) CORDI 2264 334 1930
   14%
   17%
Corynebacterium diphtheriae (strain HC02) CORDJ 2217 0 2217
0%
   17%
Corynebacterium diphtheriae (strain HC03) CORDK 2239 0 2239
0%
   17%
Corynebacterium diphtheriae (strain HC04) CORDL 2218 0 2218
0%
   17%
Corynebacterium diphtheriae (strain INCA 402) CORDN 2198 0 2198
0%
   17%
Corynebacterium diphtheriae (strain VA01) CORDV 2179 0 2179
0%
   17%
Corynebacterium diphtheriae (strain PW8) CORDW 2268 1 2267
0%
   16%
Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) COREF 2945 409 2536
   13%
   27%
Corynebacterium glutamicum (strain R) CORGB 3078 295 2783
   9%
   13%
Corynebacterium glutamicum (strain ATCC 13032 / K051) CORGK 2985 3 2982
0%
   14%
Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) CORGL 3923 513 3410
   13%
   11%
Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 / PW2) CORGP 1768 0 1768
0%
   17%
Corynebacterium jeikeium (strain K411) CORJK 2064 274 1790
   13%
   18%
Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) CORK4 2018 127 1891
   6%
   18%
Corynebacterium pseudotuberculosis (strain 1002) CORP1 2090 1 2089
0%
   18%
Corynebacterium pseudotuberculosis (strain C231) CORP2 2090 3 2087
0%
   18%
Corynebacterium pseudotuberculosis (strain I19) CORP9 2094 0 2094
0%
   18%
Corynebacterium pseudotuberculosis (strain FRC41) CORPF 2110 1 2109
0%
   18%
Corynebacterium resistens (strain DSM 45100 / JCM 12819 / GTC 2026) CORRG 2160 0 2160
0%
   17%
Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) CORU7 2011 151 1860
   7%
   18%
Corynebacterium ulcerans (strain BR-AD22) CORUB 2333 0 2333
0%
   16%
Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131) CORVD 2972 0 2972
0%
   12%
Coxiella burnetii (strain CbuK_Q154) COXB1 1915 221 1694
   11%
   20%
Coxiella burnetii (strain CbuG_Q212) COXB2 1831 221 1610
   12%
   21%
Coxiella burnetii (strain Dugway 5J108-111) COXBN 2029 290 1739
   14%
   20%
Coxiella burnetii (strain RSA 331 / Henzerling II) COXBR 1891 283 1608
   14%
   21%
Coxiella burnetii (strain RSA 493 / Nine Mile phase I) COXBU 1815 396 1419
   21%
   22%
Croceibacter atlanticus (strain ATCC BAA-628 / HTCC2559 / KCTC 12090) CROAH 2702 0 2702
0%
   12%
Cronobacter sakazakii (strain ATCC BAA-894) CROS8 4421 622 3799
   14%
   19%
Cronobacter turicensis (strain DSM 18703 / LMG 23827 / z3032) CROTZ 4452 16 4436
0%
   19%
Cryptobacterium curtum (strain ATCC 700683 / DSM 15641 / 12-3) CRYCD 1355 0 1355
0%
   23%
Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) CUPNH 6614 466 6148
   7%
   9%
Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) CUPNN 7773 0 7773
0%
   8%
Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) CUPPJ 6433 459 5974
   7%
   9%
Cupriavidus taiwanensis (strain R1 / LMG 19424) CUPTR 5838 316 5522
   5%
   10%
Cyanothece sp. (strain ATCC 51142) CYAA5 5239 237 5002
   4%
   10%
Cyanobacterium aponinum (strain PCC 10605) CYAAP 3415 0 3415
0%
   15%
Cyanobium gracile (strain ATCC 27147 / PCC 6307) CYAGP 3258 0 3258
0%
   15%
Cyanothece sp. (strain PCC 8802) CYAP0 4405 0 4405
0%
   12%
Cyanothece sp. (strain PCC 7822) CYAP2 6559 0 6559
0%
   8%
Cyanothece sp. (strain PCC 7425 / ATCC 29141) CYAP4 5232 234 4998
   4%
   10%
Cyanothece sp. (strain PCC 7424) CYAP7 5656 271 5385
   4%
   9%
Cyanothece sp. (strain PCC 8801) CYAP8 4335 261 4074
   6%
   12%
Cyanobacterium stanieri (strain ATCC 29140 / PCC 7202) CYASC 2831 0 2831
0%
   18%
Cyclobacterium marinum (strain ATCC 25205 / DSM 745) CYCMS 4983 1 4982
0%
   7%
Cycloclasticus sp. (strain P1) CYCSP 2243 0 2243
0%
   22%
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) CYTH3 3771 246 3525
   6%
   10%
Dechloromonas aromatica (strain RCB) DECAR 4155 445 3710
   10%
   14%
Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) DEFDS 2338 0 2338
0%
   18%
Dehalococcoides ethenogenes (strain 195) DEHE1 1502 239 1263
   15%
   21%
Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) DEHLB 1619 2 1617
0%
   20%
Dehalococcoides sp. (strain BAV1) DEHSB 1355 200 1155
   14%
   23%
Dehalococcoides sp. (strain CBDB1) DEHSC 1454 238 1216
   16%
   22%
Dehalococcoides sp. (strain GT) DEHSG 1378 0 1378
0%
   23%
Dehalococcoides sp. (strain VS) DEHSV 1426 2 1424
0%
   22%
Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) DEIDV 3452 166 3286
   4%
   12%
Deinococcus geothermalis (strain DSM 11300) DEIGD 3006 261 2745
   8%
   14%
Deinococcus gobiensis (strain DSM 21396 / JCM 16679 / CGMCC 1.7299 / I-0) DEIGI 4329 0 4329
0%
   9%
Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34) DEIML 3262 0 3262
0%
   12%
Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416 / KR-200) DEIPD 4157 0 4157
0%
   10%
Deinococcus proteolyticus (strain ATCC 35074 / DSM 20540 / JCM 6276 / NBRC 101906 / NCIMB 13154 / VKM Ac-1939 / CCM 2703) DEIPM 2652 2 2650
0%
   14%
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) DEIRA 3085 501 2584
   16%
   14%
Delftia acidovorans (strain DSM 14801 / SPH-1) DELAS 5968 246 5722
   4%
   9%
Delftia sp. (strain Cs1-4) DELSC 5855 0 5855
0%
   9%
Denitrovibrio acetiphilus (strain DSM 12809 / N2460) DENA2 2901 1 2900
0%
   14%
Desulfatibacillum alkenivorans (strain AK-01) DESAA 5198 177 5021
   3%
   8%
Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) DESAD 3807 194 3613
   5%
   11%
Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) DESAH 4846 157 4689
   3%
   8%
Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4) DESAJ 4462 0 4462
0%
   11%
Desulfovibrio aespoeensis (strain ATCC 700646 / DSM 10631 / Aspo-2) DESAO 3269 0 3269
0%
   12%
Desulforudis audaxviator (strain MP104C) DESAP 2136 203 1933
   9%
   20%
Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) DESAR 2859 0 2859
0%
   14%
Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) DESAS 4016 0 4016
0%
   12%
Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) DESAT 2595 0 2595
0%
   16%
Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) DESB2 3268 1 3267
0%
   13%
Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) DESBD 3421 1 3420
0%
   12%
Desulfotomaculum carboxydivorans (strain DSM 14880 / VKM B-2319 / CO-1-SRB) DESCC 2620 0 2620
0%
   18%
Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) DESDA 2345 194 2151
   8%
   16%
Desulfovibrio desulfuricans (strain G20) DESDG 3220 295 2925
   9%
   13%
Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 / JW/IU-DC1) DESDJ 3993 0 3993
0%
   11%
Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1) DESDL 3287 0 3287
0%
   13%
Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) DESHD 4852 244 4608
   5%
   10%
Desulfitobacterium hafniense (strain Y51) DESHY 5014 313 4701
   6%
   10%
Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) DESIS 2551 2 2549
0%
   16%
Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) DESK7 3385 0 3385
0%
   13%
Desulfosporosinus meridiei (strain ATCC BAA-275 / DSM 13257 / NCIMB 13706 / S10) DESMD 4334 0 4334
0%
   11%
Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) DESMR 4663 164 4499
   3%
   8%
Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) DESOD 5217 0 5217
0%
   10%
Desulfococcus oleovorans (strain DSM 6200 / Hxd3) DESOH 3255 190 3065
   5%
   12%
Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) DESPD 3259 0 3259
0%
   14%
Desulfotalea psychrophila (strain LSv54 / DSM 12343) DESPS 3233 320 2913
   9%
   13%
Desulfohalobium retbaense (strain DSM 5692) DESRD 2500 0 2500
0%
   16%
Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) DESRL 3763 0 3763
0%
   13%
Desulfotomaculum reducens (strain MI-1) DESRM 3220 283 2937
   8%
   15%
Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) DESTA 5410 0 5410
0%
   8%
Desulfurobacterium thermolithotrophum (strain DSM 11699 / BSA) DESTD 1496 0 1496
0%
   24%
Desulfobacula toluolica (strain DSM 7467 / Tol2) DESTT 4187 0 4187
0%
   9%
Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) DESVH 3517 375 3142
   10%
   12%
Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) DESVM 3178 220 2958
   6%
   13%
Desulfovibrio vulgaris (strain RCH1) DESVR 3214 0 3214
0%
   13%
Desulfovibrio vulgaris subsp. vulgaris (strain DP4) DESVV 3085 276 2809
   8%
   13%
Dickeya dadantii (strain 3937) DICD3 4532 63 4469
   1%
   17%
Dickeya dadantii (strain Ech586) DICD5 4141 7 4134
0%
   19%
Dickeya dadantii (strain Ech703) DICDC 3961 17 3944
0%
   20%
Dichelobacter nodosus (strain VCS1703A) DICNV 1273 230 1043
   18%
   28%
Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) DICT6 1913 155 1758
   8%
   19%
Dictyoglomus turgidum (strain Z-1310 / DSM 6724) DICTD 1743 153 1590
   8%
   20%
Dickeya zeae (strain Ech1591) DICZE 4131 13 4118
0%
   19%
Dinoroseobacter shibae (strain DFL 12) DINSH 4086 275 3811
   6%
   12%
Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) DYAFD 5703 1 5702
0%
   7%
Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) ECHVK 4505 0 4505
0%
   8%
Escherichia coli O103:H2 (strain 12009 / EHEC) ECO10 4964 5 4959
0%
   20%
Escherichia coli O104:H4 (strain 2009EL-2050) ECO14 5123 0 5123
0%
   19%
Escherichia coli O111:H- (strain 11128 / EHEC) ECO1A 5238 6 5232
0%
   19%
Escherichia coli O104:H4 (strain 2011C-3493) ECO1C 5105 0 5105
0%
   19%
Escherichia coli O104:H4 (strain 2009EL-2071) ECO1E 5044 0 5044
0%
   19%
Escherichia coli O139:H28 (strain E24377A / ETEC) ECO24 4915 834 4081
   16%
   20%
Escherichia coli O26:H11 (strain 11368 / EHEC) ECO26 5326 5 5321
0%
   18%
Escherichia coli O127:H6 (strain E2348/69 / EPEC) ECO27 4594 765 3829
   16%
   21%
Escherichia coli O44:H18 (strain 042 / EAEC) ECO44 4884 7 4877
0%
   20%
Escherichia coli O45:K1 (strain S88 / ExPEC) ECO45 4805 756 4049
   15%
   20%
Escherichia coli (strain 55989 / EAEC) ECO55 4797 762 4035
   15%
   20%
Escherichia coli O157:H7 ECO57 6485 2013 4472
   31%
   15%
Escherichia coli O157:H7 (strain EC4115 / EHEC) ECO5E 5279 748 4531
   14%
   18%
Escherichia coli O157:H7 (strain TW14359 / EHEC) ECO5T 5255 12 5243
0%
   19%
Escherichia coli O7:K1 (strain IAI39 / ExPEC) ECO7I 4554 753 3801
   16%
   21%
Escherichia coli O81 (strain ED1a) ECO81 4940 731 4209
   14%
   20%
Escherichia coli O8 (strain IAI1) ECO8A 4330 761 3569
   17%
   22%
Escherichia coli O83:H1 (strain NRG 857C / AIEC) ECO8N 4575 1 4574
0%
   21%
Escherichia coli OR:K5:H- (strain ABU 83972) ECOAB 4786 0 4786
0%
   20%
Escherichia coli (strain B / BL21-DE3) ECOBD 4842 16 4826
0%
   22%
Escherichia coli (strain B / REL606) ECOBR 4142 14 4128
0%
   23%
Escherichia coli (strain K12 / MC4100 / BW2952) ECOBW 4042 765 3277
   18%
   24%
Escherichia coli (strain 'clone D i14') ECOC1 4908 0 4908
0%
   20%
Escherichia coli (strain 'clone D i2') ECOC2 4908 0 4908
0%
   20%
Escherichia coli O55:H7 (strain CB9615 / EPEC) ECOCB 5085 7 5078
0%
   19%
Escherichia coli (strain ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1) ECOD1 4583 5 4578
0%
   23%
Escherichia coli (strain K12 / DH10B) ECODH 3990 771 3219
   19%
   24%
Escherichia coli O78:H11 (strain H10407 / ETEC) ECOH1 4778 7 4771
0%
   20%
Escherichia coli O9:H4 (strain HS) ECOHS 4308 841 3467
   19%
   23%
Escherichia coli O1:K1 / APEC ECOK1 4870 713 4157
   14%
   19%
Escherichia coli O18:K1:H7 (strain IHE3034 / ExPEC) ECOKI 4748 8 4740
0%
   20%
Escherichia coli (strain ATCC 55124 / KO11) ECOKO 4637 1 4636
0%
   23%
Escherichia coli O6:K15:H31 (strain 536 / UPEC) ECOL5 4605 889 3716
   19%
   21%
Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) ECOL6 5335 1684 3651
   31%
   18%
Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) ECOLC 4173 819 3354
   19%
   24%
Escherichia coli (strain K12) ECOLI 4305 4303 2
   99%
   23%
Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) ECOLU 4975 764 4211
   15%
   20%
Escherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / NCIMB 8666 / NRRL B-766 / W) ECOLW 5063 6 5057
0%
   21%
Escherichia coli ECOLX 4375 1 4374
0%
   67%
Escherichia coli O150:H5 (strain SE15) ECOS5 4461 5 4456
0%
   22%
Escherichia coli (strain SE11) ECOSE 4979 756 4223
   15%
   20%
Escherichia coli (strain SMS-3-5 / SECEC) ECOSM 4876 791 4085
   16%
   20%
Escherichia coli (strain UM146) ECOUM 4779 0 4779
0%
   20%
Escherichia coli (strain UTI89 / UPEC) ECOUT 5192 825 4367
   15%
   19%
Edwardsiella ictaluri (strain 93-146) EDWI9 3686 420 3266
   11%
   20%
Edwardsiella tarda (strain EIB202) EDWTE 3568 15 3553
0%
   20%
Edwardsiella tarda (strain FL6-60) EDWTF 3251 6 3245
0%
   23%
Eggerthella sp. (strain YY7918) EEGSY 2674 0 2674
0%
   13%
Eggerthella lenta (strain ATCC 25559 / DSM 2243 / JCM 9979 / NCTC 11813 / VPI 0255) EGGLE 3054 0 3054
0%
   12%
Ehrlichia canis (strain Jake) EHRCJ 921 189 732
   20%
   28%
Ehrlichia chaffeensis (strain Arkansas) EHRCR 1100 187 913
   17%
   24%
Ehrlichia ruminantium (strain Gardel) EHRRG 948 186 762
   19%
   27%
Ehrlichia ruminantium (strain Welgevonden) EHRRW 1122 184 938
   16%
   26%
Elusimicrobium minutum (strain Pei191) ELUMP 1528 118 1410
   7%
   19%
Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) EMTOG 4249 0 4249
0%
   8%
Enterobacter sp. (strain 638) ENT38 4236 713 3523
   16%
   21%
Enterobacter aerogenes (strain ATCC 13048 / DSM 30053 / JCM 1235 / KCTC 2190 / NBRC 13534 / NCIMB 10102 / NCTC 10006) ENTAK 4909 12 4897
0%
   19%
Enterobacter asburiae (strain LF7a) ENTAL 4601 0 4601
0%
   20%
Enterobacter cloacae subsp. cloacae (strain ATCC 13047 / DSM 30054 / NBRC 13535 / NCDC 279-56) ENTCC 5411 11 5400
0%
   16%
Enterobacter cloacae (strain SCF1) ENTCS 4393 11 4382
0%
   20%
Enterococcus faecalis (strain 62) ENTF6 3010 1 3009
0%
   15%
Enterococcus faecalis (strain ATCC 700802 / V583) ENTFA 3240 458 2782
   14%
   14%
Enterococcus faecalis (strain ATCC 47077 / OG1RF) ENTFO 2579 7 2572
0%
   17%
Enterococcus faecium (strain Aus0004) ENTFU 2826 2 2824
0%
   15%
Enterococcus hirae (strain ATCC 9790 / DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459 / NCDO 1258) ENTHA 2744 29 2715
   1%
   14%
Erwinia amylovora (strain CFBP1430) ERWAC 3733 4 3729
0%
   20%
Erwinia amylovora (strain ATCC 49946 / CCPPB 0273 / Ea273 / 27-3) ERWAE 3563 4 3559
0%
   21%
Erwinia billingiae (strain Eb661) ERWBE 4915 6 4909
0%
   16%
Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) ERWCT 4459 783 3676
   17%
   18%
Erwinia pyrifoliae (strain DSM 12163 / CIP 106111 / Ep16/96) ERWP6 3938 5 3933
0%
   18%
Erwinia pyrifoliae (strain Ep1/96) ERWPE 3619 3 3616
0%
   20%
Erwinia sp. (strain Ejp617) ERWSE 3632 1 3631
0%
   20%
Erwinia tasmaniensis (strain DSM 17950 / Et1/99) ERWT9 3618 531 3087
   14%
   20%
Erythrobacter litoralis (strain HTCC2594) ERYLH 2999 231 2768
   7%
   14%
Erysipelothrix rhusiopathiae (strain Fujisawa) ERYRF 1679 1 1678
0%
   16%
Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) ESCF3 4309 694 3615
   16%
   22%
Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) ETHHY 2663 0 2663
0%
   15%
Eubacterium eligens (strain ATCC 27750 / VPI C15-48) EUBE2 2761 117 2644
   4%
   14%
Eubacterium limosum (strain KIST612) EUBLK 4506 0 4506
0%
   9%
Eubacterium rectale (strain ATCC 33656 / VPI 0990) EUBR3 3545 121 3424
   3%
   11%
Exiguobacterium antarcticum (strain B7) EXIAB 2767 0 2767
0%
   16%
Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) EXIS2 3005 290 2715
   9%
   16%
Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) EXISA 3020 220 2800
   7%
   15%
Ferrimonas balearica (strain DSM 9799 / CCM 4581 / PAT) FERBD 3781 5 3776
0%
   16%
Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) FERNB 1725 176 1549
   10%
   18%
Fervidobacterium pennivorans (strain DSM 9078 / Ven5) FERPD 1914 1 1913
0%
   17%
Fibrobacter succinogenes (strain ATCC 19169 / S85) FIBSS 3796 9 3787
0%
   10%
Filifactor alocis (strain ATCC 35896 / D40 B5) FILAD 1615 1 1614
0%
   20%
Finegoldia magna (strain ATCC 29328) FINM2 1813 171 1642
   9%
   17%
Flavobacteriaceae bacterium (strain 3519-10) FLAB3 2533 2 2531
0%
   13%
Flavobacterium branchiophilum (strain FL-15) FLABF 2848 0 2848
0%
   11%
Flavobacterium columnare (strain ATCC 49512 / CIP 103533 / TG 44/87) FLACA 2617 0 2617
0%
   12%
Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9) FLAIG 2649 0 2649
0%
   12%
Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) FLAJ1 5016 235 4781
   4%
   7%
Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) FLAPJ 2408 220 2188
   9%
   14%
Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Sio-4) FLELS 3828 0 3828
0%
   8%
Flexistipes sinusarabici (strain DSM 4947 / MAS 10) FLESM 2185 0 2185
0%
   18%
Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) FLUTR 4016 0 4016
0%
   8%
Frankia alni (strain ACN14a) FRAAA 6710 208 6502
   3%
   6%
Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) FRAAD 3098 0 3098
0%
   16%
Francisella cf. novicida (strain Fx1) FRACF 1810 1 1809
0%
   21%
Francisella cf. novicida (strain 3523) FRACN 1854 0 1854
0%
   21%
Frankia symbiont subsp. Datisca glomerata FRADG 4063 0 4063
0%
   11%
Francisella noatunensis subsp. orientalis (strain Toba 04) FRANT 1595 0 1595
0%
   22%
Francisella philomiragia subsp. philomiragia (strain ATCC 25017) FRAP2 1875 250 1625
   13%
   21%
Frankia sp. (strain CcI3) FRASC 4441 262 4179
   5%
   10%
Frankia sp. (strain EAN1pec) FRASN 7133 175 6958
   2%
   6%
Francisella sp. (strain TX077308) FRAST 1975 2 1973
0%
   20%
Frankia sp. (strain EuI1c) FRASU 7079 1 7078
0%
   6%
Francisella tularensis subsp. tularensis (strain FSC 198) FRAT1 1528 271 1257
   17%
   24%
Francisella tularensis subsp. tularensis (strain NE061598) FRATE 1709 0 1709
0%
   22%
Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) FRATF 1515 258 1257
   17%
   24%
Francisella tularensis subsp. holarctica (strain LVS) FRATH 1678 287 1391
   17%
   22%
Francisella tularensis subsp. mediasiatica (strain FSC147) FRATM 1388 238 1150
   17%
   26%
Francisella tularensis subsp. novicida (strain U112) FRATN 1719 275 1444
   15%
   22%
Francisella tularensis subsp. holarctica (strain OSU18) FRATO 1510 270 1240
   17%
   24%
Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4) FRATT 1528 296 1232
   19%
   24%
Francisella tularensis subsp. tularensis (strain WY96-3418) FRATW 1573 258 1315
   16%
   24%
Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) FUSNN 2046 354 1692
   17%
   18%
Gallibacterium anatis (strain UMN179) GALAU 2482 1 2481
0%
   23%
Gallionella capsiferriformans (strain ES-2) GALCS 2853 2 2851
0%
   18%
Gardnerella vaginalis (strain ATCC 14019 / 317) GARV3 1365 0 1365
0%
   19%
Gardnerella vaginalis (strain 409-05) GARV4 1257 0 1257
0%
   20%
Gardnerella vaginalis (strain HMP9231) GARVH 1313 0 1313
0%
   19%
Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GEMAT 3932 95 3837
   2%
   10%
Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GEOBB 4042 263 3779
   6%
   13%
Geobacillus kaustophilus (strain HTA426) GEOKA 3516 507 3009
   14%
   16%
Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GEOLS 3644 252 3392
   6%
   13%
Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GEOMG 3502 360 3142
   10%
   14%
Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) GEOOG 4795 10 4785
0%
   9%
Geobacillus sp. (strain Y4.1MC1) GEOS0 3602 0 3602
0%
   16%
Geobacillus sp. (strain Y412MC52) GEOS2 3418 0 3418
0%
   17%
Geobacillus sp. (strain Y412MC10) GEOS4 6237 1 6236
0%
   9%
Geobacter sp. (strain M18) GEOS8 4406 1 4405
0%
   12%
Geobacillus sp. (strain C56-T3) GEOSC 3315 0 3315
0%
   17%
Geobacter sp. (strain FRC-32) GEOSF 3797 239 3558
   6%
   13%
Geobacter sulfurreducens (strain DL-1 / KN400) GEOSK 3309 1 3308
0%
   15%
Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GEOSL 3402 405 2997
   11%
   14%
Geobacter sp. (strain M21) GEOSM 4068 242 3826
   5%
   13%
Geobacillus sp. (strain WCH70) GEOSW 3048 346 2702
   11%
   18%
Geobacillus sp. (strain Y412MC61) GEOSY 3414 2 3412
0%
   17%
Geobacillus thermoglucosidasius (strain C56-YS93) GEOTC 3711 0 3711
0%
   16%
Geobacillus thermodenitrificans (strain NG80-2) GEOTN 3424 411 3013
   12%
   17%
Geobacter uraniireducens (strain Rf4) GEOUR 4255 295 3960
   6%
   12%
Glaciecola nitratireducens (strain JCM 12485 / KCTC 12276 / FR1064) GLANF 3653 0 3653
0%
   14%
Glaciecola sp. (strain 4H-3-7+YE-5) GLAS4 4541 0 4541
0%
   13%
Gloeobacter violaceus (strain PCC 7421) GLOVI 4406 441 3965
   10%
   11%
Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GLUDA 5839 205 5634
   3%
   11%
Gluconobacter oxydans (strain 621H) GLUOX 2626 320 2306
   12%
   16%
Gluconacetobacter xylinus (strain NBRC 3288 / BCRC 11682 / LMG 1693) GLUXN 3116 0 3116
0%
   14%
Gordonia bronchialis (strain ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667) GORB4 4628 10 4618
0%
   10%
Gordonia polyisoprenivorans (strain DSM 44266 / VH2) GORPV 5097 0 5097
0%
   9%
Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GRABC 2430 258 2172
   10%
   19%
Gramella forsetii (strain KT0803) GRAFK 3554 204 3350
   5%
   9%
Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) GRAMM 4804 0 4804
0%
   9%
Haemophilus ducreyi (strain 35000HP / ATCC 700724) HAEDU 1694 510 1184
   30%
   29%
Haemophilus influenzae (strain 10810) HAEI1 1870 1 1869
0%
   30%
Haemophilus influenzae (strain R2846 / 12) HAEI2 1631 0 1631
0%
   34%
Haemophilus influenzae (strain R2866) HAEI6 1793 2 1791
0%
   31%
Haemophilus influenzae (strain 86-028NP) HAEI8 1792 495 1297
   27%
   31%
Haemophilus influenzae (strain PittEE) HAEIE 1615 423 1192
   26%
   32%
Haemophilus influenzae (strain PittGG) HAEIG 1662 393 1269
   23%
   30%
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) HAEIN 1707 1707 0
Complete
   34%
Haemophilus parainfluenzae (strain T3T1) HAEP3 1973 3 1970
0%
   28%
Haemophilus parasuis serovar 5 (strain SH0165) HAEPS 2002 293 1709
   14%
   26%
Haemophilus somnus (strain 129Pt) HAES1 1793 401 1392
   22%
   29%
Haemophilus somnus (strain 2336) HAES2 1971 378 1593
   19%
   26%
Hahella chejuensis (strain KCTC 2396) HAHCH 6751 449 6302
   6%
   9%
Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9) HALED 3469 7 3462
0%
   16%
Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) HALH1 6704 0 6704
0%
   5%
Halobacillus halophilus (strain ATCC 35676 / DSM 2266 / JCM 20832 / NBRC 102448/ NCIMB 2269) HALH3 4099 2 4097
0%
   13%
Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) HALHC 2446 0 2446
0%
   18%
Halorhodospira halophila (strain DSM 244 / SL1) HALHL 2406 337 2069
   14%
   21%
Halothiobacillus neapolitanus (strain ATCC 23641 / c2) HALNC 2353 9 2344
0%
   21%
Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) HALO1 6684 5 6679
0%
   7%
Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) HALOH 2324 178 2146
   7%
   18%
Halothece sp. (strain PCC 7418) HALP7 3701 1 3700
0%
   14%
Halanaerobium praevalens (strain ATCC 33744 / DSM 2228 / GSL) HALPG 2055 0 2055
0%
   19%
Halanaerobium sp. (strain sapolanicus) HALSL 2250 0 2250
0%
   18%
Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) HAMD5 2045 227 1818
   11%
   21%
Helicobacter acinonychis (strain Sheeba) HELAH 1596 260 1336
   16%
   20%
Helicobacter bizzozeronii (strain CIII-1) HELBC 1959 0 1959
0%
   14%
Helicobacter cetorum (strain ATCC BAA-429 / MIT 00-7128) HELC0 1722 0 1722
0%
   19%
Helicobacter cetorum (strain ATCC BAA-540 / MIT 99-5656) HELCM 1620 0 1620
0%
   19%
Helicobacter cinaedi (strain PAGU611) HELCP 2118 0 2118
0%
   15%
Helicobacter felis (strain ATCC 49179 / NCTC 12436 / CS1) HELFC 1649 5 1644
0%
   17%
Helicobacter hepaticus (strain ATCC 51449 / 3B1) HELHP 1872 320 1552
   17%
   18%
Helicobacter mustelae (strain ATCC 43772 / LMG 18044 / NCTC 12198 / 12198) HELM1 1400 1 1399
0%
   23%
Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) HELMI 2922 219 2703
   7%
   16%
Helicobacter pylori (strain 51) HELP1 1412 1 1411
0%
   24%
Helicobacter pylori (strain P12) HELP2 1572 257 1315
   16%
   22%
Helicobacter pylori (strain B8) HELP3 1710 0 1710
0%
   20%
Helicobacter pylori (strain Gambia94/24) HELP4 1599 0 1599
0%
   21%
Helicobacter pylori (strain 52) HELP5 1403 2 1401
0%
   24%
Helicobacter pylori (strain India7) HELP7 1596 0 1596
0%
   21%
Helicobacter pylori (strain 908) HELP9 1595 0 1595
0%
   21%
Helicobacter pylori (strain B38) HELPB 1369 3 1366
0%
   25%
Helicobacter pylori (strain Cuz20) HELPC 1563 0 1563
0%
   22%
Helicobacter pylori (strain 35A) HELPF 1464 0 1464
0%
   23%
Helicobacter pylori (strain G27) HELPG 1501 233 1268
   15%
   22%
Helicobacter pylori (strain HPAG1) HELPH 1541 294 1247
   19%
   23%
Helicobacter pylori (strain F16) HELPI 1486 0 1486
0%
   23%
Helicobacter pylori (strain J99) HELPJ 1488 565 923
   37%
   25%
Helicobacter pylori (strain F30) HELPK 1480 0 1480
0%
   23%
Helicobacter pylori (strain F32) HELPL 1490 0 1490
0%
   23%
Helicobacter pylori (strain SJM180) HELPM 1579 0 1579
0%
   22%
Helicobacter pylori (strain PeCan4) HELPP 1563 0 1563
0%
   22%
Helicobacter pylori (strain F57) HELPQ 1515 0 1515
0%
   23%
Helicobacter pylori (strain Lithuania75) HELPR 1560 0 1560
0%
   22%
Helicobacter pylori (strain Shi470) HELPS 1564 261 1303
   16%
   22%
Helicobacter pylori (strain Sat464) HELPT 1504 0 1504
0%
   23%
Helicobacter pylori (strain v225d) HELPV 1547 0 1547
0%
   21%
Helicobacter pylori (strain SouthAfrica7) HELPW 1562 0 1562
0%
   22%
Helicobacter pylori (strain ATCC 700392 / 26695) HELPY 1553 581 972
   37%
   47%
Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) HERA2 5254 190 5064
   3%
   8%
Herminiimonas arsenicoxydans HERAR 3274 314 2960
   9%
   16%
Herbaspirillum seropedicae (strain SmR1) HERSS 4732 2 4730
0%
   12%
Hippea maritima (strain ATCC 700847 / DSM 10411 / MH2) HIPMA 1653 0 1653
0%
   23%
Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) HIRBI 3187 3 3184
0%
   13%
Hodgkinia cicadicola (strain Dsem) HODCD 169 0 169
0%
   8%
Hydrogenobaculum sp. (strain Y04AAS1) HYDS0 1626 151 1475
   9%
   21%
Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) HYDTT 2039 8 2031
0%
   19%
Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) HYPDA 3452 0 3452
0%
   13%
Hyphomonas neptunium (strain ATCC 15444) HYPNA 3499 278 3221
   7%
   12%
Hyphomicrobium sp. (strain MC1) HYPSM 4889 0 4889
0%
   10%
Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) IDILO 2608 420 2188
   16%
   20%
Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) IGNAJ 3163 0 3163
0%
   13%
Ilyobacter polytropus (strain DSM 2926 / CuHBu1) ILYPC 2859 3 2856
0%
   15%
Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7 KIP) INTC7 3551 2 3549
0%
   12%
Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) ISOPI 3721 1 3720
0%
   10%
Isoptericola variabilis (strain 225) ISOV2 2879 0 2879
0%
   14%
Janthinobacterium sp. (strain Marseille) JANMA 3695 318 3377
   8%
   15%
Jannaschia sp. (strain CCS1) JANSC 4271 326 3945
   7%
   10%
Jonesia denitrificans (strain ATCC 14870 / DSM 20603 / CIP 55134) JONDD 2495 7 2488
0%
   15%
Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125) KANKD 2630 4 2626
0%
   19%
Ketogulonicigenium vulgare (strain WSH-001) KETVW 3049 0 3049
0%
   13%
Ketogulonicigenium vulgare (strain Y25) KETVY 3209 2 3207
0%
   12%
Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) KINRD 4674 196 4478
   4%
   9%
Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC A-0304 / NBRC 14216 / KM-6054) KITSK 7443 0 7443
0%
   6%
Klebsiella oxytoca (strain ATCC 8724 / DSM 4798 / JCM 20051 / NBRC 3318 / NRRL B-199 / KCTC 1686) KLEOK 5483 2 5481
0%
   17%
Klebsiella pneumoniae (strain 342) KLEP3 5738 696 5042
   12%
   16%
Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) KLEP7 5126 713 4413
   13%
   18%
Klebsiella pneumoniae subsp. pneumoniae (strain HS11286) KLEPH 5728 0 5728
0%
   16%
Klebsiella variicola (strain At-22) KLEVT 5056 6 5050
0%
   19%
Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) KOCRD 2352 155 2197
   6%
   16%
Koribacter versatilis (strain Ellin345) KORVE 4771 259 4512
   5%
   9%
Kosmotoga olearia (strain TBF 19.5.1) KOSOT 2087 128 1959
   6%
   16%
Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) KRIFD 6940 9 6931
0%
   7%
Krokinobacter sp. (strain 4H-3-7-5) KROS4 2978 0 2978
0%
   11%
Kytococcus sedentarius (strain ATCC 14392 / DSM 20547 / CCM 314 / 541) KYTSD 2531 2 2529
0%
   14%
Lactobacillus acidophilus (strain 30SC) LACA3 2028 0 2028
0%
   17%
Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) LACAC 1859 282 1577
   15%
   17%
Lactobacillus amylovorus (strain GRL 1118) LACAL 1913 0 1913
0%
   17%
Lactobacillus amylovorus (strain GRL 1112) LACAR 2081 0 2081
0%
   16%
Lactobacillus brevis (strain ATCC 367 / JCM 1170) LACBA 2201 257 1944
   11%
   16%
Lactobacillus buchneri (strain NRRL B-30929) LACBN 2361 2 2359
0%
   17%
Lactobacillus casei (strain ATCC 334) LACC3 2708 284 2424
   10%
   15%
Lactobacillus casei (strain BL23) LACCB 2999 243 2756
   8%
   13%
Lactobacillus casei (strain LC2W) LACCC 3119 1 3118
0%
   13%
Lactobacillus casei (strain BD-II) LACCD 3166 1 3165
0%
   13%
Lactobacillus crispatus (strain ST1) LACCS 2003 1 2002
0%
   16%
Lactobacillus casei (strain Zhang) LACCZ 2822 0 2822
0%
   14%
Lactobacillus delbrueckii subsp. bulgaricus (strain 2038) LACD2 1766 0 1766
0%
   19%
Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) LACDA 1519 241 1278
   15%
   21%
Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) LACDB 1682 230 1452
   13%
   20%
Lactobacillus delbrueckii subsp. bulgaricus (strain ND02) LACDN 2001 0 2001
0%
   17%
Lactobacillus fermentum (strain NBRC 3956 / LMG 18251) LACF3 1818 226 1592
   12%
   21%
Lactobacillus fermentum (strain CECT 5716) LACFC 1043 1 1042
0%
   16%
Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) LACGA 1694 214 1480
   12%
   19%
Lactococcus garvieae (strain Lg2) LACGL 1938 1 1937
0%
   18%
Lactococcus garvieae (strain ATCC 49156 / DSM 6783 / NCIMB 13208 / YT-3) LACGT 1920 0 1920
0%
   19%
Lactobacillus helveticus (strain DPC 4571) LACH4 1580 226 1354
   14%
   21%
Lactobacillus helveticus (strain H10) LACHH 1935 0 1935
0%
   17%
Lactobacillus johnsonii (strain FI9785) LACJF 1726 0 1726
0%
   19%
Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) LACJO 1809 293 1516
   16%
   18%
Lactobacillus kefiranofaciens (strain ZW3) LACKZ 2134 2 2132
0%
   16%
Lactococcus lactis subsp. lactis (strain IL1403) LACLA 2225 533 1692
   23%
   19%
Lactococcus lactis subsp. lactis (strain KF147) LACLK 2458 1 2457
0%
   17%
Lactococcus lactis subsp. cremoris (strain MG1363) LACLM 2383 371 2012
   15%
   17%
Lactococcus lactis subsp. cremoris (strain NZ9000) LACLN 2446 5 2441
0%
   16%
Lactococcus lactis subsp. cremoris (strain SK11) LACLS 2442 323 2119
   13%
   17%
Lactococcus lactis subsp. lactis (strain CV56) LACLV 2365 0 2365
0%
   17%
Lactobacillus plantarum (strain JDM1) LACPJ 2948 4 2944
0%
   15%
Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) LACPL 3088 461 2627
   14%
   15%
Lactobacillus plantarum (strain ST-III) LACPS 3028 0 3028
0%
   14%
Lactobacillus reuteri (strain DSM 20016) LACRD 1865 247 1618
   13%
   19%
Lactobacillus rhamnosus (strain ATCC 53103 / GG) LACRG 3181 2 3179
0%
   14%
Lactobacillus reuteri (strain JCM 1112) LACRJ 1792 231 1561
   12%
   20%
Lactobacillus rhamnosus (strain Lc 705) LACRL 2952 1 2951
0%
   13%
Lactobacillus ruminis (strain ATCC 27782 / RF3) LACRR 1851 0 1851
0%
   20%
Lactobacillus reuteri (strain ATCC 55730 / SD2112) LACRS 2201 2 2199
0%
   16%
Lactobacillus salivarius (strain UCC118) LACS1 1998 280 1718
   14%
   19%
Lacinutrix sp. (strain 5H-3-7-4) LACS5 2958 0 2958
0%
   11%
Lactobacillus salivarius (strain CECT 5713) LACSC 1533 3 1530
0%
   18%
Lactobacillus sanfranciscensis (strain TMW 1.1304) LACSM 1263 0 1263
0%
   24%
Lactobacillus sakei subsp. sakei (strain 23K) LACSS 1872 313 1559
   16%
   20%
Laribacter hongkongensis (strain HLHK9) LARHH 3208 262 2946
   8%
   16%
Lawsonia intracellularis (strain PHE/MN1-00) LAWIP 1342 198 1144
   14%
   22%
Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) LEAB4 3429 1 3428
0%
   10%
Legionella longbeachae serogroup 1 (strain NSW150) LEGLN 3460 1 3459
0%
   13%
Legionella pneumophila serogroup 1 (strain 2300/99 Alcoy) LEGP2 3183 2 3181
0%
   14%
Legionella pneumophila (strain Paris) LEGPA 3147 383 2764
   12%
   15%
Legionella pneumophila (strain Corby) LEGPC 3202 333 2869
   10%
   14%
Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) LEGPH 2930 381 2549
   13%
   15%
Legionella pneumophila (strain Lens) LEGPL 2919 380 2539