HAMAP: Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) complete proteome

General information

Species:  Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670)
Species code: ACIC5
Taxonomy: Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium (TaxID: 240015) [NEWT/ NCBI]
Description: Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) is an aerobic, mesophilic, chemo-organotroph bacterium isolated from acidic mine drainage in Yanahara mine, Okayama, Japan. A. capsulatum is able to use a variety of carbon sources that span simple sugars to more complex substrates such as hemicellulose, cellulose, and chitin. It is capable of nitrate and nitrite reduction, but not N2 fixation or denitrification. It plays an important role in iron redox reactions and important contributions to the terrestrial carbon cycle. The presence of cellulose synthesis genes and a large class of novel high-molecular-weight excreted proteins suggests potential traits for desiccation resistance, biofilm formation, and/or contribution to soil structure. (adapated from PMID: 19201974).
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: No
Number of membranes: 2
Statistics: Number of ACIC5 entries in UniProtKB: 3363 (143 in UniProtKB/Swiss-Prot + 3220 in UniProtKB/TrEMBL)

Genome(s) sequenced

Strain:    ATCC 51196 / DSM 11244 / JCM 7670
Genome structure:
Chromosome EMBL accession number CP001472 (circular; 4,127,356 bp) (download entry)
Reference(s):
[1] Pubmed=19201974;
Ward N.L., Challacombe J.F., Janssen P.H., Henrissat B., Coutinho P.M., Wu M., Xie G., Haft D.H., Sait M., Badger J., Barabote R.D., Bradley B., Brettin T.S., Brinkac L.M., Bruce D., Creasy T., Daugherty S.C., Davidsen T.M., DeBoy R.T., Detter J.C., Dodson R.J., Durkin A.S., Ganapathy A., Gwinn-Giglio M., Han C.S., Khouri H., Kiss H., Kothari S.P., Madupu R., Nelson K.E., Nelson W.C., Paulsen I., Penn K., Ren Q., Rosovitz M.J., Selengut J.D., Shrivastava S., Sullivan S.A., Tapia R., Thompson L.S., Watkins K.L., Yang Q., Yu C., Zafar N., Zhou L., Kuske C.R. ;
"Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.";
Appl. Environ. Microbiol. 75:2046-2056(2009).
Web links:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=28085
Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/precalc/project.php?pid=28085
GIB (DDBJ): http://gtps.ddbj.nig.ac.jp/single/index.php?spid=Acap_ATCC51196


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