Home Proteomes Families Hamap-Scan Documents Downloads Links
HAMAP: Acidiphilium cryptum (strain JF-5) complete proteome
General information

Species:  Acidiphilium cryptum (strain JF-5)
Species code: ACICJ
Taxonomy: Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium (TaxID: 349163) [NEWT/ NCBI]
Description: Acidiphilium cryptum (strain JF-5) is an acidophilic dissimilatory iron-reducing bacterium (DIRB) of the alpha subdivision of the Proteobacteria. This bacteria is detected in a variety of extreme low pH, radionuclide- and heavy-metal contaminated habitats where Fe(III) reduction is taking place, and may represent a significant proportion of metal-transforming organisms in these environments. Strain JF-5 serves as a model organism for facultative iron-respiring Alphaproteobacterium. It utilizes glucose as an electron donor with the concomitant reduction of soluble and solid-phase Fe(III). Major findings for this bacterium are a novel outer-membrane cytochrome c involved in iron respiration and a Cr(VI) reductase enzyme.
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of ACICJ entries in the UniProt Knowledgebase: 3521 (262 in UniProtKB/Swiss-Prot + 3259 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    JF-5
Genome structure:
• Chromosome EMBL accession number CP000697 (circular; 3,389,227 bp) (download entry)
• Plasmid pACRY01 EMBL accession number CP000689 (circular; 203,589 bp) (download entry)
• Plasmid pACRY02 EMBL accession number CP000690 (circular; 187,422 bp) (download entry)
• Plasmid pACRY03 EMBL accession number CP000691 (circular; 88,953 bp) (download entry)
• Plasmid pACRY04 EMBL accession number CP000692 (circular; 37,415 bp) (download entry)
• Plasmid pACRY05 EMBL accession number CP000693 (circular; 37,155 bp) (download entry)
• Plasmid pACRY06 EMBL accession number CP000694 (circular; 8,781 bp) (download entry)
• Plasmid pACRY07 EMBL accession number CP000695 (circular; 5,629 bp) (download entry)
• Plasmid pACRY08 EMBL accession number CP000696 (circular; 4,909 bp) (download entry)
Reference(s):
[1] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P. ;
"Complete sequence of chromosome of Acidiphilium cryptum JF-5.";
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases.
[2] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P. ;
"Complete sequence of plasmid1 pACRY01 of Acidiphilium cryptum JF-5.";
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases.
[3] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P. ;
"Complete sequence of plasmid2 pACRY02 of Acidiphilium cryptum JF-5.";
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases.
[4] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P. ;
"Complete sequence of plasmid3 pACRY03 of Acidiphilium cryptum JF-5.";
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases.
[5] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P. ;
"Complete sequence of plasmid4 pACRY04 of Acidiphilium cryptum JF-5.";
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases.
[6] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P. ;
"Complete sequence of plasmid5 pACRY05 of Acidiphilium cryptum JF-5.";
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases.
[7] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P. ;
"Complete sequence of plasmid6 pACRY06 of Acidiphilium cryptum JF-5.";
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases.
[8] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P. ;
"Complete sequence of plasmid7 pACRY07 of Acidiphilium cryptum JF-5.";
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases.
[9] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P. ;
"Complete sequence of plasmid8 pACRY08 of Acidiphilium cryptum JF-5.";
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases.
Web links:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=15753
Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/project.php?pid=15753
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Acry_JF5
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p15753_Aci_crypt
 EBI Proteome Analysis page



Tools