Home Proteomes Families Hamap-Scan Documents Downloads Links
HAMAP: Aliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238)) complete proteome
General information

Species:  Aliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238))
Species code: ALISL
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Aliivibrio (TaxID: 316275) [NEWT/ NCBI]
Description: Vibrio salmonicida is a Gram-negative marine bacterium that is a cause of cold-water vibriosis in Atlantic salmon (Salmo salar), cod and occasionally rainbow trout. It is prevalent in fish farms. Clinical signs are inappetence and erratic swimming, with anaemia and haemorrhage with a generalized septicaemia, presenting large amounts of bacterial cells in the blood of moribund or recently dead fish. The haemorrhages are mainly found in the integument surrounding the internal organs of the fish (adapted from http://www.spaquaculture.com/default.aspx?pageid=529). Vaccines are available against this pathogen.
Properties: Presence of flagella: not known
Human pathogen: No
Interaction: Animal pathogen in Fish
Number of membranes: 2
Number of inteins:0
Statistics: Number of ALISL entries in the UniProt Knowledgebase: 3513 (424 in UniProtKB/Swiss-Prot + 3089 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    LFI1238
Genome structure:
• Chromosome 2 EMBL accession number FM178380 (circular; 1,206,461 bp) (download entry)
• Chromosome 1 EMBL accession number FM178379 (circular; 3,325,165 bp) (download entry)
• Plasmid pVSAL840 EMBL accession number FM178381 (circular; 83,540 bp) (download entry)
• Plasmid pVSAL320 EMBL accession number FM178382 (circular; 30,807 bp) (download entry)
• Plasmid pVSAL54 EMBL accession number FM178383 (circular; 5,360 bp) (download entry)
• Plasmid pVSAL43 EMBL accession number FM178384 (circular; 4,327 bp) (download entry)
Reference(s):
[1] Hjerde E., Lorentzen M.S., Holden M.T.G., Seeger K., Paulsen S., Bason N., Churcher C., Harris D., Norbertczak H., Quail M.A., Sanders S., Thurston S., Parkhill J., Willassen N.-P., Thomson N.R. ;
"The complete genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238.";
Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases.
Web links:
Official genome site(s):
http://cold.imb.fm.uit.no/ProteinGroup/Research/index_html_genomeseq
http://www.sanger.ac.uk/Projects/V_salmonicida/
Other web sites:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=30703
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Asal_LFI1238
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p30703_Ali_salmo
 EBI Proteome Analysis page



Tools