Home | Contact

Species code:	BACFR
Taxonomy:	Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides (TaxID: 295405) [NEWT/ NCBI]
Description:	Bacteroides fragilis is a Gram-negative rod, which represents a large part of the colonic bacteria flora. It is an opportunistic pathogen that can severely limit the success of gastro-intestinal surgery, and is frequently associated with extraintestinal infections such as abscesses and soft tissue infections, as well as diarrheal diseases in animals and humans. (Partially extracted from Karyn's Genomes-EBI).
Properties:	Presence of flagella: No Human pathogen: Yes Interaction: Animal commensal in Mammalia; Animal pathogen in Mammalia Number of membranes: 2 Number of inteins:0
Statistics:	Number of BACFR entries in the UniProt Knowledgebase: 334 (334 in UniProtKB/Swiss-Prot + 0 in UniProtKB/TrEMBL)

Genome structure:	• Chromosome EMBL accession number AP006841 (circular; 5,277,274 bp) (download entry) • Plasmid pBFY46 EMBL accession number AP006842 (circular; 33,716 bp) (download entry)
Reference(s):	[1] PubMed=15466707; [ NCBI , EBI , Israel , Japan ] Kuwahara T., Yamashita A., Hirakawa H., Nakayama H., Toh H., Okada N., Kuhara S., Hattori M., Hayashi T., Ohnishi Y. ; "Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation."; Proc. Natl. Acad. Sci. U.S.A. 101:14919-14924(2004).
Web links:	Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid295405%5Borgn%5D Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/project.php?pid=13067 GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Bfra_YCH46 JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=ntbf03 Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Bacteroides_fragilis.html PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p13067_Bac_fragi  EBI Proteome Analysis page

• Perform a BLAST search against all proteins from this proteome
  
  
• Download all UniProt Knowledgebase entries of this proteome
  • in UniProt Knowledgebase format
  • in FASTA format
  
  
• Retrieve set of characterized or identified proteins for this proteome
  
  
• Retrieve set of proteins with 3D structure for this proteome

Swiss Institute of Bioinformatics | Disclaimer