Home | Contact

Species code:	BORPA
Taxonomy:	Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella (TaxID: 519) [NEWT/ NCBI]
Description:	Bordetella parapertussis infects both sheep and humans. In human infants it causes whooping cough.
Properties:	Presence of flagella: No Human pathogen: Yes Interaction: Animal pathogen in Mammalia Number of membranes: 2 Number of inteins:0
Statistics:	Number of BORPA entries in the UniProt Knowledgebase: 4161 (507 in UniProtKB/Swiss-Prot + 3654 in UniProtKB/TrEMBL)

Genome structure:	Chromosome EMBL accession number BX470249 (circular; 4,773,551 bp) (download entry)
Reference(s):	[1] MEDLINE=22827954; PubMed=12910271; [ NCBI , EBI , Israel , Japan ] Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N.R., Harris D.E., Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., Cerdeno-Tarraga A.-M., Temple L., James K.D., Harris B., Quail M.A., Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I., Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., Barrell B.G., Maskell D.J. ; "Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica."; Nat. Genet. 35:32-40(2003).
Web links:	Official genome site(s): http://www.sanger.ac.uk/Projects/B_pertussis/ Other web sites: CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Bordetella&GLspecies=parapertussis&GLstrain=12822 Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid257311%5Borgn%5D GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Bpar_12822 JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=ntbp02 Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Bordetella_parapertussis.html PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p25_Bor_parap  EBI Proteome Analysis page

• Perform a BLAST search against all proteins from this proteome
  
  
• Download all UniProt Knowledgebase entries of this proteome
  • in UniProt Knowledgebase format
  • in FASTA format
  
  
• Retrieve set of characterized or identified proteins for this proteome
  
  
• Retrieve set of proteins with 3D structure for this proteome

Swiss Institute of Bioinformatics | Disclaimer