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HAMAP: Bradyrhizobium japonicum complete proteome
General information

Species:  Bradyrhizobium japonicum
Species code: BRAJA
Taxonomy: Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium (TaxID: 375) [NEWT/ NCBI]
Description: Bradyrhizobium japonicum, a member of rhizobia, has an ability to form root nodules on soybeans (Glycine max). B.japonicum strain USDA 110, which was originally isolated from soybean nodule in Florida, USA in 1957, has been widely used for the purpose of molecular genetics, physiology, and ecology, because this strain is superior at symbiotic nitrogen fixation with soybeans as compared with other strains.
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: Plant symbiont
Number of membranes: 2
Number of inteins:0
Statistics: Number of BRAJA entries in the UniProt Knowledgebase: 8253 (653 in UniProtKB/Swiss-Prot + 7600 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    USDA 110
Genome structure:
Chromosome EMBL accession number BA000040 (circular; 9,105,828 bp) (download entry)
Reference(s):
[1] MEDLINE=22484998; PubMed=12597275; [ NCBI , EBI , Israel , Japan ]
Kaneko T., Nakamura Y., Sato S., Minamisawa K., Uchiumi T., Sasamoto S., Watanabe A., Idesawa K., Iriguchi M., Kawashima K., Kohara M., Matsumoto M., Shimpo S., Tsuruoka H., Wada T., Yamada M., Tabata S. ;
"Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110.";
DNA Res. 9:189-197(2002).
Web links:
Official genome site(s):
http://bacteria.kazusa.or.jp/rhizobase/Bradyrhizobium/index.html
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Bradyrhizobium&GLspecies=japonicum&GLstrain=USDA110
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid224911%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Bjap_USDA110
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=ntbj01
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Bradyrhizobium_japonicum.html
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p17_Bra_japon
RhizoDB: http://xbase.bham.ac.uk/rhizodb/genome.pl?id=963
 EBI Proteome Analysis page



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