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HAMAP: Burkholderia phymatum (strain DSM 17167 / STM815) complete proteome
General information

Species:  Burkholderia phymatum (strain DSM 17167 / STM815)
Species code: BURP8
Taxonomy: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia (TaxID: 391038) [NEWT/ NCBI]
Description: It has only recently been discovered that in addition to alphaproteobacteria some betaproteobacteria are also able to nodulate legumes and fix atmospheric nitrogen. Burkholderia phymatum STM815 was isolated from a root nodule of Machaerium lunatum in French Guiana. Although it was isolated from M.lunatum it nodulates Mimosa spp., much more effectively, and has a broader host range than another known Mimosa symbiont Cupriavidus taiwanensis LMG19424 (CUPTR). Additionally B.phymatum strain STM815 is diazotrophic in culture, and thus is the first betaproteobacteria confirmed to fix nitrogen when free-living.
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: Plant symbiont
Number of membranes: 2
Number of inteins:0
Statistics: Number of BURP8 entries in the UniProt Knowledgebase: 7461 (333 in UniProtKB/Swiss-Prot + 7128 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    DSM 17167 / STM815
Genome structure:
• Chromosome 1 EMBL accession number CP001043 (circular; 3,479,187 bp) (download entry)
• Chromosome 2 EMBL accession number CP001044 (circular; 2,697,374 bp) (download entry)
• Plasmid pBPHY01 EMBL accession number CP001045 (circular; 1,904,893 bp) (download entry)
• Plasmid pBPHY02 EMBL accession number CP001046 (circular; 595,108 bp) (download entry)
Reference(s):
[1] Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Bruce D., Goodwin L., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Bacher J., Blanchard J., Cohan F., James E., Lawrence J., Lizotte-Waniewski M., Moulin L., Rainey P., Riley M., Souza V., Wertz J., Young P. ;
"Complete sequence of chromosome 1 of Burkholderia phymatum STM815.";
Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases.
[2] Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Bruce D., Goodwin L., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Bacher J., Blanchard J., Cohan F., James E., Lawrence J., Lizotte-Waniewski M., Moulin L., Rainey P., Riley M., Souza V., Wertz J., Young P. ;
"Complete sequence of chromosome 2 of Burkholderia phymatum STM815.";
Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases.
[3] Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Bruce D., Goodwin L., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Bacher J., Blanchard J., Cohan F., James E., Lawrence J., Lizotte-Waniewski M., Moulin L., Rainey P., Riley M., Souza V., Wertz J., Young P. ;
"Complete sequence of plasmid 1 of Burkholderia phymatum STM815.";
Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases.
[4] Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Bruce D., Goodwin L., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Bacher J., Blanchard J., Cohan F., James E., Lawrence J., Lizotte-Waniewski M., Moulin L., Rainey P., Riley M., Souza V., Wertz J., Young P. ;
"Complete sequence of plasmid 2 of Burkholderia phymatum STM815.";
Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases.
Web links:
Official genome site(s):
http://genome.jgi-psf.org/finished_microbes/burps/burps.info.html
Other web sites:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=17409
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Bphy_STM815
 EBI Proteome Analysis page



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