HAMAP: Chlamydophila caviae complete proteome
General information

Species:  Chlamydophila caviae
Species code: CHLCV
Taxonomy: Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydophila (TaxID: 83557) [NEWT/ NCBI]
Description: C.caviae infects the conjunctiva of guinea-pigs. C.caviae is markedly specific for guinea-pigs as attempts to infect mice, rabbits and gerbils have been unsuccessful.
Properties: Presence of flagella: No
Human pathogen: No
Interaction: Animal pathogen in Mammalia (intracellular obligate)
Number of membranes: 2
Number of inteins:0
Statistics: Number of CHLCV entries in the UniProt Knowledgebase: 1005 (268 in UniProtKB/Swiss-Prot + 737 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    GPIC
Genome structure:
• Chromosome EMBL accession number AE015925 (circular; 1,173,390 bp) (download entry)
• Plasmid pCpGP1 EMBL accession number AE015926 (circular; 7,966 bp) (download entry)
Reference(s):
[1] MEDLINE=22569155; PubMed=12682364; [ NCBI , EBI , Israel , Japan ]
Read T.D., Myers G.S.A., Brunham R.C., Nelson W.C., Paulsen I.T., Heidelberg J.F., Holtzapple E.K., Khouri H.M., Federova N.B., Carty H.A., Umayam L.A., Haft D.H., Peterson J.D., Beanan M.J., White O., Salzberg S.L., Hsia R.-C., McClarty G., Rank R.G., Bavoil P.M., Fraser C.M. ;
"Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae.";
Nucleic Acids Res. 31:2134-2147(2003).
Web links:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Chlamydia&GLspecies=caviae&GLstrain=GPIC
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid227941%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Ccav_GPIC
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=gcp
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Chlamydia_caviae.html
NMPDR: http://www.nmpdr.org/FIG/wiki/rest.cgi/NmpdrPlugin/SeedViewer?pattern=227941.1;page=SearchResult
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p228_Chl_cavia
 EBI Proteome Analysis page



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