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HAMAP: Chlamydia pneumoniae (Chlamydophila pneumoniae) complete proteome
General information

Species:  Chlamydia pneumoniae (Chlamydophila pneumoniae)
Species code: CHLPN
Taxonomy: Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia (TaxID: 83558) [NEWT/ NCBI]
Description: Obligate intracellular parasite depending on the host machinery for ATP synthesis. Chlamydial life cycle comprehends an intracellular metabolically- active "reticular body" and an inert extracellular spore-like "elementary body" equipped with a unique disulfide-cross-linked protein envelope. Causes acute respiratory diseases in humans, which develop into chronic reactive airway disease, asthma and potentially lung cancer. Infection is also associated with atherosclerosis and coronaropathies.
Properties: Presence of flagella: No
Human pathogen: Yes
Interaction: Animal pathogen in Mammalia (intracellular obligate)
Number of membranes: 2
Number of inteins:0
Statistics: Number of CHLPN entries in the UniProt Knowledgebase: 1570 (425 in UniProtKB/Swiss-Prot + 1145 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    CWL029
Genome structure:
Chromosome EMBL accession number AE001363 (circular; 1,230,230 bp) (download entry)
Reference(s):
[1] MEDLINE=99206606; PubMed=10192388; [ NCBI , EBI , Israel , Japan ]
Kalman S., Mitchell W.P., Marathe R., Lammel C.J., Fan J., Hyman R.W., Olinger L., Grimwood J., Davis R.W., Stephens R.S. ;
"Comparative genomes of Chlamydia pneumoniae and C. trachomatis.";
Nat. Genet. 21:385-389(1999).
Web links:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Chlamydophila&GLspecies=pneumoniae&GLstrain=CWL029
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=248
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Cpne_CWL029
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=ntcp01
NMPDR: http://www.nmpdr.org/FIG/wiki/rest.cgi/NmpdrPlugin/SeedViewer?pattern=115713.1;page=SearchResult
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p248_Chl_pneum
 EBI Proteome Analysis page

Strain:    AR39
Genome structure:
Chromosome EMBL accession number AE002161 (circular; 1,229,853 bp) (download entry)
Reference(s):
[1] MEDLINE=20150255; PubMed=10684935; [ NCBI , EBI , Israel , Japan ]
Read T.D., Brunham R.C., Shen C., Gill S.R., Heidelberg J.F., White O., Hickey E.K., Peterson J.D., Utterback T.R., Berry K.J., Bass S., Linher K.D., Weidman J.F., Khouri H.M., Craven B., Bowman C., Dodson R.J., Gwinn M.L., Nelson W.C., DeBoy R.T., Kolonay J.F., McClarty G., Salzberg S.L., Eisen J.A., Fraser C.M. ;
"Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39.";
Nucleic Acids Res. 28:1397-1406(2000).
Web links:
CBS (AR39): http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Chlamydophila&GLspecies=pneumoniae&GLstrain=AR39
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=247
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Cpne_AR39
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=bcp
NMPDR: http://www.nmpdr.org/FIG/wiki/rest.cgi/NmpdrPlugin/SeedViewer?pattern=115711.7;page=SearchResult
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p247_Chl_pneum
 EBI Proteome Analysis page

Strain:    J138
Genome structure:
Chromosome EMBL accession number BA000008 (circular; 1,226,565 bp) (download entry)
Reference(s):
[1] MEDLINE=20330349; PubMed=10871362; [ NCBI , EBI , Israel , Japan ]
Shirai M., Hirakawa H., Kimoto M., Tabuchi M., Kishi F., Ouchi K., Shiba T., Ishii K., Hattori M., Kuhara S., Nakazawa T. ;
"Comparison of whole genome sequences of Chlamydia pneumoniae J138 from Japan and CWL029 from USA.";
Nucleic Acids Res. 28:2311-2314(2000).
Web links:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Chlamydophila&GLspecies=pneumoniae&GLstrain=J138
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=257
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Cpne_J138
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=ntcp02
NMPDR: http://www.nmpdr.org/FIG/wiki/rest.cgi/NmpdrPlugin/SeedViewer?pattern=138677.1;page=SearchResult
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p257_Chl_pneum
 EBI Proteome Analysis page

Strain:    TW-183
Genome structure:
Chromosome EMBL accession number AE009440 (circular; 1,225,935 bp) (download entry)
Reference(s):
[1] Geng M.M., Schuhmacher A., Muehldorfer I., Bensch K.W., Schaefer K.P., Schneider S., Pohl T., Essig A., Marre R., Melchers K. ;
"The genome sequence of Chlamydia pneumoniae TW183 and comparison with other Chlamydia strains based on whole genome sequence analysis.";
Submitted (MAY-2002) to the EMBL/GenBank/DDBJ databases.
Web links:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Chlamydophila&GLspecies=pneumoniae&GLstrain=TW183
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=420
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Cpne_TW183
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=ntcp05
NMPDR: http://www.nmpdr.org/FIG/wiki/rest.cgi/NmpdrPlugin/SeedViewer?pattern=182082.1;page=SearchResult
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p420_Chl_pneum
 EBI Proteome Analysis page



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